CmUC03G059230 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC03G059230
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Reverse transcriptase
Location	CmU531Chr03: 12478204 .. 12484261 (+)
RNA-Seq Expression	CmUC03G059230
Synteny	CmUC03G059230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGTTTTGCACTAGAGTCTCTAGTAACGGCAGGTTTAAAGCCCGGTCTAGTGGTTCGTACTTTCCAGGAGGATCACAAAGGGGAAACACACAGAGAGGACGAGGGAGGTTTCCTCAGACATCTGTACCTACAGAACGGTCGCAGTACAATCAACCTAGTGAATCTGTGGCCAGCTCAGTGCGAAAACCGTATTGCACTTCTTGTGGTAACACCCATTGGGAACAGTGTTTTGTAGGGCCTGATGTTTTTTATAACTGTGGCCAACCAGGACATTTTAAAAGAGATTGTCCTCAACCTAAGAAAGGAAGGGAAACAGAGCAGAGAACAGTATTGCAGACAGCGAATCAGTCTAGACAGGAAATGGGTGCTGGAGAGGGGACCAGTGGAGGCCGACAGAGAAGTAATACAGGTAGACCAAGACAGCAGGGACAGGTGTTTTATGTGACACGGCAGGAGGCCGAGGCGACACCGGATGTAGTCACGGGTATGCTTATTATTTGCTCTAAAACTGCACATGTGTTAATAGATTCAAGGGCTACCCACTCATTTGTGTCTTGTAAATTTTCTGTGCATATAAATAGAAGATTAGAACCTTTGCCTGAAGCATTGCTAGTATGTACCCCTACTGGGGAAACCATTGTTATAAAACATGCTTATTTTGAGTGTGAAATTGTGATTGACGGTGTGATATGGTTGACTGATTTATTACCTCTAGTATTATTGGAGTTTGATGTAATTCTTGGCATGGATTTTTTTATCAAAATACCATGCGAAAGTTGATTACTTCAAGAAGGAAGTGTGGTTGACAAAGTCCGATGGGGTTGAGGTGGTGTTTAAAGGAAGGAGGCGGATTCTTCCTACTTGTGTAATTTCTGCAGTAAAAGCCAGAAAGTTATTGAGTAAAGGCTGTGAAGCATATTTAGCTTATGTAACAGAAGTTTCTCGTCTGGGCCTACTTCGGAGCAGACCTCTGGGATAGTTGTAAATACTCAGTTTATGTCCATGTTTTGTGATGTACTTGTTCCATGGGAGTGTTGGGAGGATCGTTTTGTATTACATATATATATAGAACACTTGTTGATAGGTTGTTATATTATCGCATGGCCTAATAGTAAAAGTGCTTTTATTTGAGATTAAGCTGGCATTTAGTTGAATATTGAAGATCTGTATATGATTTATGCGTTAGAGATGGACTAGGGAGAGTGCGGTTTCACACTCACTCCTAGGGATAAGGAATATCTGGGAGGGGGTGTGACACTAATGCTCAGGGACTCGTAGAAGGCATTGAGGGCGGCCCCAATTCTAGTACCTATGTGCACATAGAGGTATATACGACGCTAATGTGTTGAGATTACTCCACACAGCTAAGGAAAATCGACGTTGAGGAGCGTTGAGCATTGCTCTGCCTCAACTAGGGAAAAAGTATTTTGAATGAACGAGATTGTGATTATTTGTTCCAAACAGATATGTATACATGATAAACAATGATTTGATTAGTTTTACTGTTAAAGTAAAATATTTTCAGAAAAACTGTTACTCATTGAGCTATAGCTCACCCTTTTATATGTTTTCCATTTTCAGGTAGCATGACAGTTCCCGTTGCCGATCGAAGTCGAGGTTTGTCAAGAGTGTCTTAATGGTATTATCGTCCTAGGAAGGGTTTATTTGTATGTTTGGCGAATTTGACAGTACGTTATGTGACAGGGTAGTCGGTAACTGCTGTCCTCACACTCCGTCTCGGGCTACGGGAAGATAGTTCGGGGTGGGGTGTGACAGTTTTGAAGCAAGAAAAGTGTCACTCACAACTCTTTCTAGGCTTTGAGTGGATTATACGCCTTCCCTATCTCCGCTTGGCCTGAAATAAACATATTTCCTTATTATTCTTCTTTTCCATTCACTTTAACATAAACAACAACTAAACATATGCACAATGTCTTTAATTTCATCATGCGGCTAGGTTTCCGCTGGTTCATTCTCAAGCTTTAAACACTAATGCTATTGCTACAAAGCTGCTCCTTAACCTTTTTGTTATACCTTGATTTCAAGAAGAATTTGTGTGCAACGCAAACTCTCTGCAACACAAACGTTTCTAGCTTACTTTCCTCCTTAACAAAGCTGACTGCTGCAGCTTCGGTTCTTCTTATTCACCCCTGCTAAAAACACATTTCCAGTCCAAACTAAGATTTCTTCCCTTCTACAAACTTGTAAAGAATTGAGTTTCACAGATTACCTCAAAATTTCAAGGTTTAACTCCTCTTCGTTCTCTAGTTATTCTAAAATCACTCCGCGTTGCTCCAGATTGCACAACAATTCTGTAACCGTTGCTTTTACCTAAAAATTCACATAATTAACTTCAATTCCAGCTTTACTGTAACACCCCTATCCTAGATATATGTATATACCTATATCTTTACCTAGGAGTGAGTGTTACCTATTCTGCATTCTGCTAACACTGTTATATACACATTTATATATCATAACCTGCTGGCAATTGGCTTAGCTTTTACAATAGTTATGTAAAAATTTACTGATAGGATAGCAGCATGAGTAAGATTTAAGAGGCTATATTTAATATTTACAAGTATGCCTGGTGATCCTCACTATGCCACTCAAAATAAGTACAATTTCTACATAGGGATGGGGTTTGCAAGTTCCCAAGTACAAAATTCTAATTTGGCTCAGACAAGTCTTGATGGTAGGCTAAGCACCACGAACACGCTCGCTACCTGGAGAGAAAACATCAGAGAAACAAGAATCTATGAGCTACAATGCTCAGTGAGTGACTATCTAAAGTATAAACTCAATAAAGCATTGTAACACCCTGTCCCCGAAAACCTAAGTATTCACATAATTAGTAAGGATAAAAGGATAAAAGTGTGTGGATTAGCGGAATTTTTAAATGAAAAGTTAAGATTGTGAAACTATTGAATTATGGCCAATAAATTCCGTACGTTGGGATGAATGGTATTAAAAAAAAAGAGTAGAAATATTTCTGGAGATAAGGTTGATGCATAGATGGTTAAGCTCAAACGCATGGTATTTAATACTGAGGAGTTACCAAGTTGTGAAATTAGGTTCTAATGATGGCAAGTGTATGGGGTGAAGTACCATGAGTCGATGATGCAAAATATAGAACCATCACGTAGGAAAAATACCTTGCGGTGGAATGGTTGACAACGCGTCGAGGGGTGAAGCTAAGAAAAGTAATGCATTGAGTATTGTATAGAGCAATAGTAAATTGAGGTGAAGGAACAAGAATTGAGTATGGATTATGGCTATGCGTTGGTAAGCCTTATATGGGAAGCTAGTGTAAAGAGAAAAAAGTAGACCATTACCATAGCCTTGATAGATGAGTCGTTATTTTGATAGGTATGTCAGGCGTTGAAAGGTGTTATTATGTGTTCGGAGGTAAAGATGGAGTCTGACCAAGGGTTGTATTCAACTTACGCTACGTTGAGAAGAATGCCTTGAAATGGAGAGTAGTTGAATGCGATAGGCTAAGGATTAATAATTAATTGATAAGTCACAAAGTGGATAATAACTATGCGCTGAAGGTTTACTATAAAAGACCATAGTGCTGATCGGGAAGTTCTTTAGTGCAGCAAGTGCACAAGGGATCGCTAAGCGTTAAAGTGCTATGAAATGTTAAACGTTAAAGGATTATTATATGCTAGTAGGACTTCAGCGATTAGTAGGGTCTTACTATTCGTTGAGAAGTATGTGGTGAGAAAATATTGGTTATTTAGTCATACGCTGAAGAGCTTAATTTCATGATAATAGAAAATGTTATCACTATCTCCGGTAAATGCATAGGAAGAAGCTAAAGAAGGAAATGGTTAAGGAATAACCTTGGTATAAGATTCAAGGACGCATAGAGGGTAAAATCAAGGGACTTAAAGGGAGGTCATGAACGCGGAATGAAGCAAAGGTAAATGCAGGAGGGTAAACGCAGGAAGAAAGAATGTGAGTTGGATGTGGTAGTCAAAGGTAAACCACATGGTCAGAAGAGTGCAATTGTACAAAGGAGGAAATGTAGCTGTAAACGAATGTAAGAAAGGGAGCTGGAAGCATATAATATGCGAAGAAAATTGATGTATGATGTTAAGCTGAAGCGCATAGTAGTATGCGTTAGAATTTGTACACCTAAATAAAGGAGAAATGGAATAAAGGTAGTAAAGTCGAGGGTAGTAAAAGGAAGCAAAGGAGTTAAATCTAGAAGATAGTTCCATGAACGCATAGGAGCAAGGAGTTGGTTGTGTAGTTGTGTATTGGAACTTAATGAACCCATAAAGTAAGTCTATAGGCCAGGTGGTTACACATGATTGTGACACCTCATTAAGTAGGAGGTGTTAGAAAGCATGATAAACATTTCATGCAAAGTGACACAAGGACTAATGCATGATTAATTAAGCATGCAACATGACATGTGGCAAACAAGTAGCAGCACAAGAGAAGAGGTACAATGACAAGTACTCTATAAATAGGACCTTGAGGAAAAAGTAATGACTGATGATTCGGTGATATTAATCCTTGAGAGAAGGAAAGAAAGAGAGTTGAAAGAAGAAAACCTTGCGTTTGAAGGAGGAAGTCTGCGGCCAAAGAGGAAGACAACCTTGAAACTTAAGTCATCTGATATTAAGAAGTTGGCTTGCGTTGTGAAGGGTGAGCCTTGCGTTTAATCTGAATTCAACATAAAGAGTGAATGCCACGATGCGTTCAAGTTAGACCTTAAGTCCAAAGAAGGTCGACGCATCCGAAAGAGTAAAAAGAGCTAGTTTGCTGATGTGCCACTTTGTGTGTTTACCGCAAGTGTACGGGTCAAGTTATAATATAAAATGGTTAAGTCCGAGTATCGTTTCCACTAGAGATCCAATTGGGAAGGTTTAACTTACTTAGCTATTCTAGAATTGAATCAATTTTATTTGAGGATTGGAATTCAAATTTTGTTTTTGGGAAAAAGAAAAATCAAGCAAAGAAAATATCAAAGGGAGAATTGCAAGAGTCAAAGAGAATTCTAGGGTTTTGAATCCTTATTTGTTTCATCATGCAAAATTATAGATTTCATGGATTTTATTCTTATGCCTAAGTCTAGAAACTTAATTCCAAGTTATCTTCTCTCAAAGGCAACTCTTTCTCATGCAACTTAATTGATAGTTAATCTCTTAAAACCAATACAAAGATTACATGACATTAAAACTAGTCTTTAGCAACTTCCATTGTCAACCTAACTACTCTCGTGATAGATTAACAACGATTCATTGTTATAGATCAAATTAAACATATAATCTCTCGATCATACATCTAACCTAACATGTGAAGGTGGCCAATCTTCAAGAATTAAACACAATAACAATGAAAAGCATATTTATTTGAACAAAACATGAGTCTACAAAATTATCATGAATTCACAAACAATTCATCAAAAACTCTAAAACTAAAGAGTTTAGCCACTCATAGCGTGAAGCAACATATTGAGCAAAAAGAATCAAAGAAAGAGTGTAAAGAATAGGGAAACTCTACTGAAAAGAGGTTCTTGATTGAGGCAGCACCGTCACGAACTCCTTGGCTCTCGCGTCGGACTTCGAAGGGCACCAAAACTATCTCGAACTCTTTTCTTCTTCCTTGCGGCTAACTCACTCTTGGAACTCTATCTTAATTCTCACCTTTTTGGATCTTTCTTTTGTTCTGCAACTTTTCTTAATTTTCTTGATATTTCTCCCCTCCTTTGGCTGCTGAAAACACCTCAATTTATAGAGTTTGGCCGCCCAAAATTTAACCTAAAATATAAAACTTGCGTTTAATTAACGCTGGCGCCGTGGCGCTAGCATTGCGAAAAAAAATAAGTTGCTCTCGGGTTTTAGCGTCGCGGCAGCGCCGTCACAGCGCTGCGATGCTGTCTTGCGTTCATCAAGGATGGGTCGAGGCAGCGCCTTCCCAGTGCCGCGTTGCTACTATGCGTTTCTGCTTAGCGCTGCGGCGCATCATGCGTTTCAACAAGGATGCGTTTTTCAGCTCTTTTTTACCATATTCTTGCTCGGTTTTGATCTTTTAG

mRNA sequence

ATGACGCCGTTTTGCACTAGAGTCTCTAGTAACGGCAGGTTTAAAGCCCGGTCTAGTGGTTCGTACTTTCCAGGAGGATCACAAAGGGGAAACACACAGAGAGGACGAGGGAGGTTTCCTCAGACATCTGTACCTACAGAACGGTCGCAGTACAATCAACCTAGTGAATCTGTGGCCAGCTCAGTGCGAAAACCGTATTGCACTTCTTGTGGTAACACCCATTGGGAACAGTGTTTTGTAGGGCCTGATGTTTTTTATAACTGTGGCCAACCAGGACATTTTAAAAGAGATTGTCCTCAACCTAAGAAAGGAAGGGAAACAGAGCAGAGAACAGTATTGCAGACAGCGAATCAGTCTAGACAGGAAATGGGTGCTGGAGAGGGGACCAGTGGAGGCCGACAGAGAAGTAATACAGGTAGACCAAGACAGCAGGGACAGGTGTTTTATGTGACACGGCAGGAGGCCGAGGCGACACCGGATGTAGTCACGGGTAGCATGACAGTTCCCGTTGCCGATCGAAGTCGAGGGATGGGGTTTGCAAGTTCCCAAGTACAAAATTCTAATTTGGCTCAGACAAGTCTTGATGGTAGGCTAAGCACCACGAACACGCTCGCTACCTGGAGAGAAAACATCAGAGAAACAAGAATCTATGAGCTACAATGCTCAGACCTTGAGGAAAAAGTAATGACTGATGATTCGGTGATATTAATCCTTGAGAGAAGGAAAGAAAGAGAGTTGAAAGAAGAAAACCTTGCGTTTGAAGGAGGAAGTCTGCGGCCAAAGAGGAAGACAACCTTGAAACTTAAGTCATCTGATATTAAGAAGTTGGCTTGCGTTGTGAAGGCGTCGCGGCAGCGCCGTCACAGCGCTGCGATGCTGTCTTGCGTTCATCAAGGATGGGTCGAGGCAGCGCCTTCCCAGTGCCGCGTTGCTACTATGCGTTTCTGCTTAGCGCTGCGGCGCATCATGCGTTTCAACAAGGATGCGTTTTTCAGCTCTTTTTTACCATATTCTTGCTCGGTTTTGATCTTTTAG

Coding sequence (CDS)

ATGACGCCGTTTTGCACTAGAGTCTCTAGTAACGGCAGGTTTAAAGCCCGGTCTAGTGGTTCGTACTTTCCAGGAGGATCACAAAGGGGAAACACACAGAGAGGACGAGGGAGGTTTCCTCAGACATCTGTACCTACAGAACGGTCGCAGTACAATCAACCTAGTGAATCTGTGGCCAGCTCAGTGCGAAAACCGTATTGCACTTCTTGTGGTAACACCCATTGGGAACAGTGTTTTGTAGGGCCTGATGTTTTTTATAACTGTGGCCAACCAGGACATTTTAAAAGAGATTGTCCTCAACCTAAGAAAGGAAGGGAAACAGAGCAGAGAACAGTATTGCAGACAGCGAATCAGTCTAGACAGGAAATGGGTGCTGGAGAGGGGACCAGTGGAGGCCGACAGAGAAGTAATACAGGTAGACCAAGACAGCAGGGACAGGTGTTTTATGTGACACGGCAGGAGGCCGAGGCGACACCGGATGTAGTCACGGGTAGCATGACAGTTCCCGTTGCCGATCGAAGTCGAGGGATGGGGTTTGCAAGTTCCCAAGTACAAAATTCTAATTTGGCTCAGACAAGTCTTGATGGTAGGCTAAGCACCACGAACACGCTCGCTACCTGGAGAGAAAACATCAGAGAAACAAGAATCTATGAGCTACAATGCTCAGACCTTGAGGAAAAAGTAATGACTGATGATTCGGTGATATTAATCCTTGAGAGAAGGAAAGAAAGAGAGTTGAAAGAAGAAAACCTTGCGTTTGAAGGAGGAAGTCTGCGGCCAAAGAGGAAGACAACCTTGAAACTTAAGTCATCTGATATTAAGAAGTTGGCTTGCGTTGTGAAGGCGTCGCGGCAGCGCCGTCACAGCGCTGCGATGCTGTCTTGCGTTCATCAAGGATGGGTCGAGGCAGCGCCTTCCCAGTGCCGCGTTGCTACTATGCGTTTCTGCTTAGCGCTGCGGCGCATCATGCGTTTCAACAAGGATGCGTTTTTCAGCTCTTTTTTACCATATTCTTGCTCGGTTTTGATCTTTTAG

Protein sequence

MTPFCTRVSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSVPTERSQYNQPSESVASSVRKPYCTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAGEGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTVPVADRSRGMGFASSQVQNSNLAQTSLDGRLSTTNTLATWRENIRETRIYELQCSDLEEKVMTDDSVILILERRKERELKEENLAFEGGSLRPKRKTTLKLKSSDIKKLACVVKASRQRRHSAAMLSCVHQGWVEAAPSQCRVATMRFCLALRRIMRFNKDAFFSSFLPYSCSVLIF

Homology

[Close]

BLAST of CmUC03G059230 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 9.7e-29
Identity = 81/162 (50.00%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P   +  T RSQ  Q  ESV+S+VR+  
Sbjct: 268 ISSRQDFKNRSEGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESVSSTVRRTP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  HW+QCFVG DV Y CGQPGHFK+DCPQ     + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHWDQCFVGADVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 388 EGTSGARQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 427

[Close]

BLAST of CmUC03G059230 vs. NCBI nr
Match: KAA0037886.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYJ98020.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 7.7e-26
Identity = 79/162 (48.77%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFP-QTSVPTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P Q +  T RSQ  Q  ESVAS+VR+  
Sbjct: 209 ISSRQEFKNRSGGQASRNMSYGSVFQRQSQRMPSQPTRSTVRSQQGQ--ESVASTVRRTP 268

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           C SCG  H +QC VG  V Y CGQPGHFK+DCPQ     + +Q    QT  QSR  +   
Sbjct: 269 CMSCGRNHRDQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVLVVPT 328

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSGG+Q+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 329 EGTSGGKQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 368

[Close]

BLAST of CmUC03G059230 vs. NCBI nr
Match: KAA0045363.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 7.7e-26
Identity = 77/162 (47.53%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P   +  T RSQ  Q  ES+AS+VR+  
Sbjct: 268 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRIP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  HW QC VG    Y C QPGHFK+DCPQ     + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHWGQCLVGAGACYQCRQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+ + GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 388 EGTSGARQKGDVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 427

[Close]

BLAST of CmUC03G059230 vs. NCBI nr
Match: KAA0035808.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-25
Identity = 79/162 (48.77%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFP-QTSVPTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P Q    T RSQ  Q  ES+AS+VR+  
Sbjct: 264 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPITSTVRSQPGQ--ESIASTVRRIP 323

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  H  QC VG  V Y CGQPGHFK+DCPQ     + +Q    QT  QSR  +   
Sbjct: 324 CTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 383

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 384 EGTSGARQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 423

[Close]

BLAST of CmUC03G059230 vs. NCBI nr
Match: KAA0067811.1 (putative Gag-pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-25
Identity = 78/162 (48.15%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P   +  T RSQ  Q  ES+AS+VR+  
Sbjct: 268 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRIP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  H  QC VG  V Y CGQPGHFK+DCPQ K   + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLKMTVQRDQGVGSQTIEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QE E  PDV+TG++ +
Sbjct: 388 EGTSGARQKGVVGRPRQQGKVYAMTQQEVEDAPDVITGTILI 427

[Close]

BLAST of CmUC03G059230 vs. ExPASy Swiss-Prot
Match: P62633 (Cellular nucleic acid-binding protein OS=Homo sapiens OX=9606 GN=CNBP PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.6e-04
Identity = 37/104 (35.58%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSY---FPGGSQRGNTQRGRGRFPQTSVPTERSQYNQPSESVASSVRK 67
           +SSN  FK   SG +    P G  RG   R RGR   TS        ++  + V+SS+  
Sbjct: 1   MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTS--------DRGFQFVSSSL-P 60

Query: 68  PYCTSCGNTHW--EQCFVGPDVFYNCGQPGHFKRDCPQPKKGRE 107
             C  CG +    + C +  D  YNCG+ GH  +DC +PK+ RE
Sbjct: 61  DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE 95

[Close]

BLAST of CmUC03G059230 vs. ExPASy Swiss-Prot
Match: Q5R5R5 (Cellular nucleic acid-binding protein OS=Pongo abelii OX=9601 GN=CNBP PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.6e-04
Identity = 37/104 (35.58%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSY---FPGGSQRGNTQRGRGRFPQTSVPTERSQYNQPSESVASSVRK 67
           +SSN  FK   SG +    P G  RG   R RGR   TS        ++  + V+SS+  
Sbjct: 1   MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTS--------DRGFQFVSSSL-P 60

Query: 68  PYCTSCGNTHW--EQCFVGPDVFYNCGQPGHFKRDCPQPKKGRE 107
             C  CG +    + C +  D  YNCG+ GH  +DC +PK+ RE
Sbjct: 61  DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE 95

[Close]

BLAST of CmUC03G059230 vs. ExPASy Swiss-Prot
Match: P62634 (Cellular nucleic acid-binding protein OS=Rattus norvegicus OX=10116 GN=Cnbp PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.6e-04
Identity = 37/104 (35.58%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSY---FPGGSQRGNTQRGRGRFPQTSVPTERSQYNQPSESVASSVRK 67
           +SSN  FK   SG +    P G  RG   R RGR   TS        ++  + V+SS+  
Sbjct: 1   MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTS--------DRGFQFVSSSL-P 60

Query: 68  PYCTSCGNTHW--EQCFVGPDVFYNCGQPGHFKRDCPQPKKGRE 107
             C  CG +    + C +  D  YNCG+ GH  +DC +PK+ RE
Sbjct: 61  DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE 95

[Close]

BLAST of CmUC03G059230 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.7e-29
Identity = 81/162 (50.00%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P   +  T RSQ  Q  ESV+S+VR+  
Sbjct: 268 ISSRQDFKNRSEGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESVSSTVRRTP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  HW+QCFVG DV Y CGQPGHFK+DCPQ     + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHWDQCFVGADVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 388 EGTSGARQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 427

[Close]

BLAST of CmUC03G059230 vs. ExPASy TrEMBL
Match: A0A5D3BDU3 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00490 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-26
Identity = 79/162 (48.77%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFP-QTSVPTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P Q +  T RSQ  Q  ESVAS+VR+  
Sbjct: 209 ISSRQEFKNRSGGQASRNMSYGSVFQRQSQRMPSQPTRSTVRSQQGQ--ESVASTVRRTP 268

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           C SCG  H +QC VG  V Y CGQPGHFK+DCPQ     + +Q    QT  QSR  +   
Sbjct: 269 CMSCGRNHRDQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVLVVPT 328

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSGG+Q+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 329 EGTSGGKQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 368

[Close]

BLAST of CmUC03G059230 vs. ExPASy TrEMBL
Match: A0A5A7TP97 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001420 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-26
Identity = 77/162 (47.53%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P   +  T RSQ  Q  ES+AS+VR+  
Sbjct: 268 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRIP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  HW QC VG    Y C QPGHFK+DCPQ     + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHWGQCLVGAGACYQCRQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+ + GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 388 EGTSGARQKGDVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 427

[Close]

BLAST of CmUC03G059230 vs. ExPASy TrEMBL
Match: A0A5A7SZ16 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00980 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-25
Identity = 79/162 (48.77%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFP-QTSVPTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P Q    T RSQ  Q  ES+AS+VR+  
Sbjct: 264 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPITSTVRSQPGQ--ESIASTVRRIP 323

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  H  QC VG  V Y CGQPGHFK+DCPQ     + +Q    QT  QSR  +   
Sbjct: 324 CTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPT 383

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QEAE  PDV+TG++ +
Sbjct: 384 EGTSGARQKGVVGRPRQQGKVYAMTQQEAEDAPDVITGTILI 423

[Close]

BLAST of CmUC03G059230 vs. ExPASy TrEMBL
Match: A0A5A7VQD2 (Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00150 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-25
Identity = 78/162 (48.15%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 8   VSSNGRFKARSSGSYFPGGSQRGNTQRGRGRFPQTSV-PTERSQYNQPSESVASSVRKPY 67
           +SS   FK RS G      S     QR   R P   +  T RSQ  Q  ES+AS+VR+  
Sbjct: 268 ISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRIP 327

Query: 68  CTSCGNTHWEQCFVGPDVFYNCGQPGHFKRDCPQPKKGRETEQRTVLQTANQSRQEMGAG 127
           CTSCG  H  QC VG  V Y CGQPGHFK+DCPQ K   + +Q    QT  QSR  +   
Sbjct: 328 CTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLKMTVQRDQGVGSQTIEQSRVSVVPT 387

Query: 128 EGTSGGRQRSNTGRPRQQGQVFYVTRQEAEATPDVVTGSMTV 169
           EGTSG RQ+   GRPRQQG+V+ +T+QE E  PDV+TG++ +
Sbjct: 388 EGTSGARQKGVVGRPRQQGKVYAMTQQEVEDAPDVITGTILI 427

The following BLAST results are available for this feature:

BLAST of CmUC03G059230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053222.1	9.7e-29	50.00	hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]	[more]
KAA0037886.1	7.7e-26	48.77	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYJ98020.1 Gag...	[more]
KAA0045363.1	7.7e-26	47.53	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035808.1	2.9e-25	48.77	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0067811.1	3.8e-25	48.15	putative Gag-pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CmUC03G059230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62633	6.6e-04	35.58	Cellular nucleic acid-binding protein OS=Homo sapiens OX=9606 GN=CNBP PE=1 SV=1	[more]
Q5R5R5	6.6e-04	35.58	Cellular nucleic acid-binding protein OS=Pongo abelii OX=9601 GN=CNBP PE=2 SV=1	[more]
P62634	6.6e-04	35.58	Cellular nucleic acid-binding protein OS=Rattus norvegicus OX=10116 GN=Cnbp PE=2...	[more]

BLAST of CmUC03G059230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBV9	4.7e-29	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BDU3	3.7e-26	48.77	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TP97	3.7e-26	47.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5A7SZ16	1.4e-25	48.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40...	[more]
A0A5A7VQD2	1.9e-25	48.15	Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of CmUC03G059230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 86..100 e-value: 0.0033 score: 26.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 86..100 e-value: 3.2E-7 score: 30.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 86..100 score: 9.834029
None	No IPR available	GENE3D	4.10.60.10		coord: 80..110 e-value: 5.6E-8 score: 34.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..58
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 80..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC03G059230.1	CmUC03G059230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding