CmUC02G047100 (gene) Watermelon (USVL531) v1

Overview
NameCmUC02G047100
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRep_fac-A_C domain-containing protein
LocationCmU531Chr02: 34744493 .. 34746946 (+)
RNA-Seq ExpressionCmUC02G047100
SyntenyCmUC02G047100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTCCGTCTTTTTCCCTCCAAACAGTGTTGTGTATAGTGGCGGAGCGCCGCTGTGTTTTCAGTTTTCAGGAACGGAGGCATTCTCCTTCAGAGGAGTAATGGAAAATGATAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACCAGTTTCTGTTACAAAGTTTGTTCTATCTGTGAGAGAACAGTTTCTGATAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCTTCCTCCAAACGTGTCTTTCGTCTTCTTGTGAGCATTTCCCCTTTTCTTACTTGGGAATTTGATTTCAGTATGTGTGGAAACTTCTTGTGATGTTCTTGTAGTTGGAATTTCGCTTGAAATTTGAATGGGAAATGTTGGGGGTTTGTTTGTTTTTTGAGAATGGATTCATTGTGGACTTGATTATATGTTTTTTGGAGAAAATATTATGTTGTGTAAAATGGGTTTGGGCTTGTACATTGCATTCTTTACATTGAGGTTCTGATTGGGGCTCTTGTATTTACATTGTTTTTGGGCAGATGTCAATTGCAACGGATAAGAAAGTACAGACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTTTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGGTAAATACCCTCTTTGTTTGTGGCTTACTTCTCGTTTGTTTGCATGAGTTTCTCTTAAATGGACAAAGGATTTAGAGCGAGAGGCATTTTATTTTGTCGAGAAACTTTCATTAGACAGCCTATAGAAAACAACCTAAAGGCAGGGTTCCTTTGCCTAAGGGAAGGGGTCAAACAAAAGCCTGCCTGTAAAGTTTAATGATCGTCAGTAGATGTCTGAAGAATACATTACAAATACATTTAGTTGGAAGATTTTCGATTGTCTTTCATGAAACCTGGCTTAATCTTCCTTCATCCAAGCTGTTCTGTTTCCATATGAATACTGGTTGAATGTTCATTTTGTACTGCAGCTGAAGCTGTAAGTGAAATTCTGGAAGGAGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACATTCAAGAGTTGTCCAAGTTGTTCCTCTAAGTTCAGGTTTTCAACCAGCAATTTTTAGACTGAGGGAATTGTATGGGGTAAGAAGCTGCTCTTAATTTTCGTTCCGTTGTCATTAGTTCTTCTAATTATATGTTTCTCCACATGCTTTTCTTTTTCTTGAGGATTATCATCTGAGGTTTGGGTGGATGTTTAGTCAGGCAGATATGTGGACTCCCATGGATAAATTTAGTTACTGTTGATTAGTATAGATACTATTTTGATTAGCAAAAAAGTTCATAATGCAGCAAAGATTATTATTTCAGATATTGGGGAACTGAGATACATCAATACTTGTTTATTGGGAGGAAGGGAGGGAAGTAAAGTGAGCTAGTTCCTTGTAGGTGTTCTAAGAGAGATATGGAAGCTCTTGAATTCTCCTCAGTTGTATTGTTGTTTTGTTTTTTTCATAGGGGTGTATTCATAGCGAAGGGCATGCATAGACGTAAGGTTTATTGAAGTGATTTTGGGATTTCATATTCTAATGTGGAAACCACAATAACTTGGTATAAAGTTATGATGAGGGAAGACTCAAGTTAAGCTCCAACTAATGAAATAATCTGGTGTCTTCTACATTTTTAATTGTAACATCCCATGCTTTTGCTTCTTCCACAGAACAAGAGCTAGTATTACATTGTCTTCACCCAGTGAGCGTCGGTGGAGCTGCACCATGGGATTGCCATTTTATGCATCTAGACAAAAAGAAGCATCAAATTCAAAGCTGTCCCTTCAACTAAGCTCCATTCTTCTCTGTCAGATGTTACAAAATTGAGCTAAATGAGCAGATGGGTGAAATTGCCCCTTCAGCTTCTATAGTTTTTGACATCTCCTCTGAACCTTTTGACATTGTAGCAGCCACTAGTCAGAATCTGTTCCTTTTGTAGCTCTCTTGTCTGAAACAGTTTAACTTCAAAACTTACAAGCTGATGTTTCTGATGAGTTCAATAAGAAAGAAAATTTGGGTTGAAATTACAAAAGTTACTTCAATAGAGAATTGAAATTGAATCACTGGTGTAGCATATGATATACCAGTAAGATTGTTTTGTTTTGTTTCTGGTTGGCCAGGTATCTTATGATTGCCCAGTGGCTCTATATATTTTCATTATTGAAATCTACTTGCAAATGGCTGCTAAATCTTGTTTACAGAGTCAATTCCAATTGATAACTCTGATTTCATTTGCTGTTGGTAAGGGACAAAATATGGAAATGGTTCCTAAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAAGCCTATCCCATTCCCGACATTGTTTGCATTTTTGCTATCATTTAGAATGTGA

mRNA sequence

AATTTCCGTCTTTTTCCCTCCAAACAGTGTTGTGTATAGTGGCGGAGCGCCGCTGTGTTTTCAGTTTTCAGGAACGGAGGCATTCTCCTTCAGAGGAGTAATGGAAAATGATAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACCAGTTTCTGTTACAAAGTTTGTTCTATCTGTGAGAGAACAGTTTCTGATAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCTTCCTCCAAACGTGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAGACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTTTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAGCTGTAAGTGAAATTCTGGAAGGAGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACATTCAAGAGTTGTCCAAGTTGTTCCTCTAAGTTCAGGTTTTCAACCAGCAATTTTTAGACTGAGGGAATTGGGTGTATTCATAGCGAAGGGCATGCATAGACAACAAGAGCTAGTATTACATTGTCTTCACCCAGTGAGCGTATCTTATGATTGCCCAGTGGCTCTATATATTTTCATTATTGAAATCTACTTGCAAATGGCTGCTAAATCTTGTTTACAGAGTCAATTCCAATTGATAACTCTGATTTCATTTGCTGTTGGTAAGGGACAAAATATGGAAATGGTTCCTAAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAAGCCTATCCCATTCCCGACATTGTTTGCATTTTTGCTATCATTTAGAATGTGA

Coding sequence (CDS)

ATTTCCGTCTTTTTCCCTCCAAACAGTGTTGTGTATAGTGGCGGAGCGCCGCTGTGTTTTCAGTTTTCAGGAACGGAGGCATTCTCCTTCAGAGGAGTAATGGAAAATGATAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACCAGTTTCTGTTACAAAGTTTGTTCTATCTGTGAGAGAACAGTTTCTGATAACCCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCTTCCTCCAAACGTGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAGACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTTTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAGCTGTAAGTGAAATTCTGGAAGGAGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACATTCAAGAGTTGTCCAAGTTGTTCCTCTAAGTTCAGGTTTTCAACCAGCAATTTTTAGACTGAGGGAATTGGGTGTATTCATAGCGAAGGGCATGCATAGACAACAAGAGCTAGTATTACATTGTCTTCACCCAGTGAGCGTATCTTATGATTGCCCAGTGGCTCTATATATTTTCATTATTGAAATCTACTTGCAAATGGCTGCTAAATCTTGTTTACAGAGTCAATTCCAATTGATAACTCTGATTTCATTTGCTGTTGGTAAGGGACAAAATATGGAAATGGTTCCTAAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAAGCCTATCCCATTCCCGACATTGTTTGCATTTTTGCTATCATTTAGAATGTGA

Protein sequence

ISVFFPPNSVVYSGGAPLCFQFSGTEAFSFRGVMENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELGVFIAKGMHRQQELVLHCLHPVSVSYDCPVALYIFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQNMEMVPKSKRDVMWAPQKLPKPIPFPTLFAFLLSFRM
Homology
[Close]
BLAST of CmUC02G047100 vs. NCBI nr
Match: XP_038901726.1 (uncharacterized protein LOC120088466 [Benincasa hispida])

HSP 1 Score: 298.5 bits (763), Expect = 6.2e-77
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDKPITTMCAVIAMDHTSFCY+VCSICERT+ DNPSSS+CKFCNFNAFNP  SSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPSSSVCKFCNFNAFNPSLSSSKRV 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRIT 153
           FRLLMSIATD+KVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAE VSEILEGEMFRIT
Sbjct: 61  FRLLMSIATDRKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRIT 120

Query: 154 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
Sbjct: 121 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 154

[Close]
BLAST of CmUC02G047100 vs. NCBI nr
Match: XP_022943427.1 (uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_022943428.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >KAG7010655.1 hypothetical protein SDJN02_27450, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-75
Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRIT 153
           FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 154 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLREL 154

[Close]
BLAST of CmUC02G047100 vs. NCBI nr
Match: XP_022943430.1 (uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata])

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-75
Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRIT 153
           FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 154 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLREL 154

[Close]
BLAST of CmUC02G047100 vs. NCBI nr
Match: XP_022140388.1 (uncharacterized protein LOC111011075 [Momordica charantia])

HSP 1 Score: 291.6 bits (745), Expect = 7.6e-75
Identity = 141/154 (91.56%), Postives = 148/154 (96.10%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDKPITTMC V+AMDH+SFCY+VCSICER++ DNPSSSLCKFCNFNAFNPG SSSKR+
Sbjct: 1   MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRL 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRIT 153
           FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAE  SEILEGEMFR+T
Sbjct: 61  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETASEILEGEMFRMT 120

Query: 154 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           ISKPKNGNAQHSRVVQVVPLSSGFQPAI RLREL
Sbjct: 121 ISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLREL 154

[Close]
BLAST of CmUC02G047100 vs. NCBI nr
Match: XP_023512879.1 (uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.8 bits (743), Expect = 1.3e-74
Identity = 143/154 (92.86%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNP SSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPCSSSSKRV 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRIT 153
           FRLLMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFR+T
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 154 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLREL 154

[Close]
BLAST of CmUC02G047100 vs. ExPASy TrEMBL
Match: A0A6J1FWW9 (uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 9.7e-76
Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRIT 153
           FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 154 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLREL 154

[Close]
BLAST of CmUC02G047100 vs. ExPASy TrEMBL
Match: A0A6J1FXT2 (uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 9.7e-76
Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRIT 153
           FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 154 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLREL 154

[Close]
BLAST of CmUC02G047100 vs. ExPASy TrEMBL
Match: A0A6J1CHW5 (uncharacterized protein LOC111011075 OS=Momordica charantia OX=3673 GN=LOC111011075 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 3.7e-75
Identity = 141/154 (91.56%), Postives = 148/154 (96.10%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDKPITTMC V+AMDH+SFCY+VCSICER++ DNPSSSLCKFCNFNAFNPG SSSKR+
Sbjct: 1   MENDKPITTMCGVVAMDHSSFCYRVCSICERSLPDNPSSSLCKFCNFNAFNPGFSSSKRL 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRIT 153
           FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAE  SEILEGEMFR+T
Sbjct: 61  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETASEILEGEMFRMT 120

Query: 154 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           ISKPKNGNAQHSRVVQVVPLSSGFQPAI RLREL
Sbjct: 121 ISKPKNGNAQHSRVVQVVPLSSGFQPAIVRLREL 154

[Close]
BLAST of CmUC02G047100 vs. ExPASy TrEMBL
Match: A0A6J1J8M2 (uncharacterized protein LOC111483608 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111483608 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 142/154 (92.21%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDK ITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRIT 153
           FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFR+T
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 154 ISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           ISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLREL 154

[Close]
BLAST of CmUC02G047100 vs. ExPASy TrEMBL
Match: A0A6J1JE09 (uncharacterized protein LOC111483608 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483608 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 142/160 (88.75%), Postives = 147/160 (91.88%), Query Frame = 0 

Query: 34  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRV 93
           MENDK ITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 94  FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPF------AAEAVSEILEG 153
           FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPF      AAEAVSEILEG
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAVSFRDAAEAVSEILEG 120

Query: 154 EMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           EMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Sbjct: 121 EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLREL 160

[Close]
BLAST of CmUC02G047100 vs. TAIR 10
Match: AT2G28105.1 (CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-41
Identity = 85/151 (56.29%), Postives = 109/151 (72.19%), Query Frame = 0 

Query: 41  TTMCAVIAMDHTSFCYKVCSICERTV-SDN---PSSSLCKFCNFNAFNPGSSSSKRVFRL 100
           T +C ++A+D T +CY+VCS C+R + SDN    SSS CKFC        S   K ++R+
Sbjct: 6   TVLCTLLAVDLTDYCYRVCSRCQRVLPSDNNGFASSSFCKFCK-------SKEPKLLYRI 65

Query: 101 LMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRITISK 160
           LMSIATD  V+TVICFDRAA VLFGCSADEFF F KL+P AA  V+++ +GEM R+T+++
Sbjct: 66  LMSIATDASVKTVICFDRAATVLFGCSADEFFHFTKLNPLAASMVNQVFDGEMLRMTLTR 125

Query: 161 PKNGNAQHSRVVQVVPLSSGFQPAIFRLREL 188
           P+N NAQH RV  VVPL SG QPAI  LR++
Sbjct: 126 PQNRNAQHMRVASVVPLRSGVQPAIVTLRQI 149

The following BLAST results are available for this feature:
BLAST of CmUC02G047100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038901726.16.2e-7794.81uncharacterized protein LOC120088466 [Benincasa hispida][more]
XP_022943427.12.0e-7592.86uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_0229434... [more]
XP_022943430.12.0e-7592.86uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata][more]
XP_022140388.17.6e-7591.56uncharacterized protein LOC111011075 [Momordica charantia][more]
XP_023512879.11.3e-7492.86uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo][more]
BLAST of CmUC02G047100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC02G047100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FWW99.7e-7692.86uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1FXT29.7e-7692.86uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1CHW53.7e-7591.56uncharacterized protein LOC111011075 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1J8M21.1e-7492.21uncharacterized protein LOC111483608 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JE091.0e-7288.75uncharacterized protein LOC111483608 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CmUC02G047100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G28105.11.5e-4156.29CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR0160... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 26..175
e-value: 5.0E-15
score: 57.3
IPR013955Replication factor A, C-terminalPFAMPF08646Rep_fac-A_Ccoord: 41..146
e-value: 6.2E-7
score: 29.3
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 35..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC02G047100.1CmUC02G047100.1mRNA