CmUC02G047040 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G047040
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	50S ribosomal protein L18
Location	CmU531Chr02: 34702429 .. 34702815 (+)
RNA-Seq Expression	CmUC02G047040
Synteny	CmUC02G047040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTATTGAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCATGTAACGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCCATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGCAGAGGGATTCACGTGGACATAAACAAGGAAGTAGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCACTCAAGAATAACGGAGTTAAACTAATACTCGACAACAATGTAGATGATGCATCTAAGTCGAGTTATCAATAA

mRNA sequence

ATGACAGTATTGAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCATGTAACGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCCATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGCAGAGGGATTCACGTGGACATAAACAAGGAAGTAGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCACTCAAGAATAACGGAGTTAAACTAATACTCGACAACAATGTAGATGATGCATCTAAGTCGAGTTATCAATAA

Coding sequence (CDS)

ATGACAGTATTGAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCATGTAACGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCCATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGCAGAGGGATTCACGTGGACATAAACAAGGAAGTAGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCACTCAAGAATAACGGAGTTAAACTAATACTCGACAACAATGTAGATGATGCATCTAAGTCGAGTTATCAATAA

Protein sequence

MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVDDASKSSYQ

Homology

[Close]

BLAST of CmUC02G047040 vs. NCBI nr
Match: XP_038901007.1 (uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901009.1 uncharacterized protein LOC120088052 [Benincasa hispida])

HSP 1 Score: 241.5 bits (615), Expect = 4.0e-60
Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH D+NKE+EKKGFKNRTKIWAIVN+LKNNGVKLILDNNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADVNKEIEKKGFKNRTKIWAIVNALKNNGVKLILDNNVD 120

Query: 121 DASKSSYQ 129
           DAS+SSYQ
Sbjct: 121 DASRSSYQ 128

[Close]

BLAST of CmUC02G047040 vs. NCBI nr
Match: XP_022943852.1 (uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943854.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943855.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943856.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943857.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943858.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943860.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >KAG7010651.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 121/128 (94.53%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIWAIVNSLKNNGVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DASKSSYQ 129
           DAS+ SY+
Sbjct: 121 DASRPSYE 128

[Close]

BLAST of CmUC02G047040 vs. NCBI nr
Match: XP_023511782.1 (uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511784.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511785.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511786.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511787.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511788.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 120/128 (93.75%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+D+NKE+EKKGFKNRTKIWAIVNSLKNNGVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DASKSSYQ 129
           DAS+ SY+
Sbjct: 121 DASRPSYE 128

[Close]

BLAST of CmUC02G047040 vs. NCBI nr
Match: XP_022985582.1 (uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985584.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985585.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985586.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985588.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985589.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985590.1 uncharacterized protein LOC111483610 [Cucurbita maxima])

HSP 1 Score: 234.2 bits (596), Expect = 6.3e-58
Identity = 120/128 (93.75%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIWAIVNSLKNNGVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DASKSSYQ 129
           DA + SY+
Sbjct: 121 DAVRPSYE 128

[Close]

BLAST of CmUC02G047040 vs. NCBI nr
Match: TYK06187.1 (50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 4.1e-57
Identity = 119/129 (92.25%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNV- 120
           EVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIWAIVNSLKNNGVKLILDNNV 
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILDNNVD 120

Query: 121 DDASKSSYQ 129
           DDA++S+YQ
Sbjct: 121 DDAAQSNYQ 129

[Close]

BLAST of CmUC02G047040 vs. ExPASy Swiss-Prot
Match: Q5F5U3 (50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of CmUC02G047040 vs. ExPASy Swiss-Prot
Match: A9M3V0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) OX=374833 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of CmUC02G047040 vs. ExPASy Swiss-Prot
Match: Q9JQQ6 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of CmUC02G047040 vs. ExPASy Swiss-Prot
Match: Q7DDT0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of CmUC02G047040 vs. ExPASy Swiss-Prot
Match: A1KRI9 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) OX=272831 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGV 112
           A + K  G+E+              ++ GF+   ++ A+  + + NG+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of CmUC02G047040 vs. ExPASy TrEMBL
Match: A0A6J1FXG0 (uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC111448460 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.2e-59
Identity = 121/128 (94.53%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIWAIVNSLKNNGVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DASKSSYQ 129
           DAS+ SY+
Sbjct: 121 DASRPSYE 128

[Close]

BLAST of CmUC02G047040 vs. ExPASy TrEMBL
Match: A0A6J1JBQ5 (uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.1e-58
Identity = 120/128 (93.75%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIWAIVNSLKNNGVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DASKSSYQ 129
           DA + SY+
Sbjct: 121 DAVRPSYE 128

[Close]

BLAST of CmUC02G047040 vs. ExPASy TrEMBL
Match: A0A5D3C2Z2 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00440 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 119/129 (92.25%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNV- 120
           EVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIWAIVNSLKNNGVKLILDNNV 
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILDNNVD 120

Query: 121 DDASKSSYQ 129
           DDA++S+YQ
Sbjct: 121 DDAAQSNYQ 129

[Close]

BLAST of CmUC02G047040 vs. ExPASy TrEMBL
Match: A0A5A7SM55 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00440 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.6e-57
Identity = 118/129 (91.47%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNV- 120
           EVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIWAIVNSLKNNGVKLIL+NNV 
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILNNNVD 120

Query: 121 DDASKSSYQ 129
           DDA++S+YQ
Sbjct: 121 DDAAQSNYQ 129

[Close]

BLAST of CmUC02G047040 vs. ExPASy TrEMBL
Match: A0A1S4E442 (uncharacterized protein LOC103501501 OS=Cucumis melo OX=3656 GN=LOC103501501 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.6e-57
Identity = 118/129 (91.47%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNV- 120
           EVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIWAIVNSLKNNGVKLIL+NNV 
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILNNNVD 120

Query: 121 DDASKSSYQ 129
           DDA++S+YQ
Sbjct: 121 DDAAQSNYQ 129

[Close]

BLAST of CmUC02G047040 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-52
Identity = 98/121 (80.99%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDNNVD 120
           EVLAMRLKV+GL+ GQGRGIH D+ KE+EKKGFK+RTK+WA++NSL+NNGV LILD++ D
Sbjct: 61  EVLAMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLILDDDDD 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of CmUC02G047040 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.3e-04
Identity = 28/111 (25.23%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK YVL++  + K++ A V+      +  +AS+ E +++ +++  R  +  AA+ +G++L
Sbjct: 16  LKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITR--DVAAASKIGKIL 75

Query: 64  AMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAIVNSLKNNGVKLI 115
             RL +  +       + + + KE    G     K+ A+++S++  GVKL+
Sbjct: 76  GERLLMKDIP-----AVTIQMKKEQRYHG-----KVKAVIDSVREAGVKLL 114

The following BLAST results are available for this feature:

BLAST of CmUC02G047040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901007.1	4.0e-60	96.09	uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 unchara...	[more]
XP_022943852.1	1.3e-58	94.53	uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 unchar...	[more]
XP_023511782.1	1.7e-58	93.75	uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783....	[more]
XP_022985582.1	6.3e-58	93.75	uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharac...	[more]
TYK06187.1	4.1e-57	92.25	50S ribosomal protein L18 [Cucumis melo var. makuwa]	[more]

BLAST of CmUC02G047040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5F5U3	1.4e-04	29.63	50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090...	[more]
A9M3V0	1.4e-04	29.63	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) ...	[more]
Q9JQQ6	1.4e-04	29.63	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (s...	[more]
Q7DDT0	1.4e-04	29.63	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX...	[more]
A1KRI9	1.4e-04	29.63	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C / serotype 2a (s...	[more]

BLAST of CmUC02G047040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXG0	6.2e-59	94.53	uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1JBQ5	3.1e-58	93.75	uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610...	[more]
A0A5D3C2Z2	2.0e-57	92.25	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7SM55	7.6e-57	91.47	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S4E442	7.6e-57	91.47	uncharacterized protein LOC103501501 OS=Cucumis melo OX=3656 GN=LOC103501501 PE=...	[more]

BLAST of CmUC02G047040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45020.1	1.5e-52	80.99	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	4.3e-04	25.23	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 5..74 e-value: 1.7E-8 score: 34.8
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..123
None	No IPR available	GENE3D	3.30.420.100		coord: 1..113 e-value: 1.3E-18 score: 69.5
None	No IPR available	PANTHER	PTHR12899:SF12	OS09G0549700 PROTEIN	coord: 1..123
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 5..111 e-value: 1.19151E-16 score: 67.9503
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 4..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G047040.1	CmUC02G047040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome