CmUC02G046650 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G046650
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA polymerase epsilon subunit C
Location	CmU531Chr02: 34338281 .. 34341053 (-)
RNA-Seq Expression	CmUC02G046650
Synteny	CmUC02G046650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCATCCAAAAAGTCAAGTATTGCTACTGAAGCCAAGAGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAACCAAGACCCACAACAATGCCAGAAAATCCGACAACGATGATTCAAAGAAGAAGAAGAAGAAGAAGAAGATTACCACCAACAATGGCTCCGTCAAGGACAACGAGGCCTTAGCTATTTCTGCTCCAGGAGGCTCAGCCTCTGAGGAGGACGATGCCGATGAACACAGAGCCGAAACCACAAGTAAAAAACCTAACGCCTCGAAATCGAAGAAAATTAAACGTAACCATGCCAAGAAAGAAGAGAATGGTTATGCTGCCGAAGAAGAAGAAGCCGAGGAGAAGATTTGTAAATTCCCCATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTTTGATTTGCGTATCAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGTAAGCCCTTAAACACCACCACAAACGCACGAACCCTAAATTGCTCAATTTTGGCTCCATTTAAGAATTAGGTATTTTCTCGTAGGGTATTATTTGGTTCTAAAGTGGGGTTTTTCTGTGTCCACAAACTTCTTAATTGTTGCAGGAGATGTTTCTCGTACAATTTTGTAAAGATGCATATGCGTGCTGTGCTCAGGATCATAAGAAGTCTCTTGCTTACAAGCATCTATGTAACGTTCCTATTCTCTATTTTGATGCTGCTGTCTATTTTCATTGGTTGTTATAGCGCACCCATATATCATTTTCCATGTTTATTTGCATCTCTGGCATGGACTCTTTGCCCTTCTTGTCTAGCCTTCTAAAATGAAAGTTAGAATTGTGAATTTTATTTCAAACGCAATTATATTTTAAACAATGTTAAAACTTGGACCTGAAATCAGTTGATAGGATTCCAGCTCCACTATCATATGGCCATCATGACAGGGATTTACCTTTTTATGTGTTGAACCGTTTCAACATATGCTCCTCGCGATACCAGATTTGAGAATGATCGATTTTCCTTTTTCTGTATACATGCTGCAAAATGAATAACAGCATGATGGTCGTCTATTTAGCAGTGACAAGGAAGATATGATGATCTTGATCATGGTCATAGTTTAACTTTAACATGGATTGTGACCTTAGATTTAGGTTGCTCCAATTACTGGCTTAAGGGACATGAATTATACTAATGCGTTGTGGAGGATTACTGATTTGTGTTATCTGTACATTGCTTTATGCTATCAAAGAGAATTTCTACCGCGGCTGAAAGCTTTAGGTAAATCCTATCACTAAACCATATTATGTCTGGCTGGATGATTTACTCACCCGAATTATTTGCATGTATGAGGAGGAAGAATAAAGAACCAGTGGAAGGAAAGTTTGTAAAATCCGATACTTGAAATGGGTCTAAGTTGGTTGGGGAGGGGGACTGAAACTGTTATCAGGATTCCTTATTTTGGACAACTTTAAGTTAGGTGGTCAAGGGACAGAAAGTGAGAGAATTGGAGAAGTACGGATTTAGGAGTCGATAATGGGGAAGCAGTGTGAATCTAGCATGAAATTTCAATTTGGATTAGGAGAGAGAAGGAAAACTCATGGAACTCTTTCTTGGTTTTGTTCTGTTATCCACTAATAGAAAGCTAGTTCAAATATCTCTCATCTGGCTAGGCGATTTTATCAAGATGATGCTGAAACTTTAATAAGCCTTCCGTTTTGCTTATTGTTTCATTTTATCTGATATTGCTAATAATTTCACTTGTGAGAACTCTGAGGATGCTTCTTTTATTTATTGACCACATTTTGATGGTGGGAAATGAGGGGGCGGGGGGTTCGAAAAAGAAAAGACCTTTTCTTCTATCTCAACCAGAGTAACCTATCTGGTTAAGAAAATTTGAATGTCAGAACTGATAGTTTCAAAGCCAGCTCTCTTCTATTAAAATTGGGAGAGGAAAAAGAAAACCCCGCTTCTTTAAGTTTGAAATTACTGGGAAGCATGTACGTGTTGAGATGTTTATTATTTATCATCCATTTGTTGTGTTTCTTGGTTGAGCATCATTGAATTTCTATGTATGTACAGTTTCAACATGTTCAACTCAAATGTATTTACCGAAACTGCCAAAGTGAGCTTAGGTGCGGTAATTGACATATACTTTTTCCTTTGAGGTTAGAGGTTCGATTACCTATCTCCATAATTGTTGTACTAAAGAAATATATGCATTATAATATCATCATAGACCAATGATTATTCTGCTTATAATTGAAACTTTAGAATTCGCTTTCTTTCAACTACCAAAGCATTGTTTTAGATGTAAGATTTTCTTCGAAGTAGTAGTAAGATTCTCCTTTCTTGTTGCAGCATCAGTAGTTGGCAAAAGGAAGAGATACGACTTTCTTTCAGGTAACACATTGCCTATTACATTATGCTCTACTACTGCCACTGCCATTATTAGAAAGATGATTTGTCGTCTCTAAACTGATAGATGGCTTCTAAAACGTCAAATGTTTATTTTATCGTCCCCAGATTTTGTTCCAGAGAAATTAAAATTCGAAGATGCGTTAAAGAAAAGAAGCATGGCAGAATCAGGGAAAGATTAGGTTTCTTTGTCTTTTAATTTGAACACTTCATATTGTTCTTTGGATGTGTAATACTTAGGCATCTTTCTTGTCATGTCAATGGGAATCCAAGGAAGTTAGATACAAACAAAATACACTTTTTTTCCTCCGTACAGTTCTGTAAGTTTATTAACGACATCTCAAATCTAACATCCAT

mRNA sequence

ATGGCTTCATCCAAAAAGTCAAGTATTGCTACTGAAGCCAAGAGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAACCAAGACCCACAACAATGCCAGAAAATCCGACAACGATGATTCAAAGAAGAAGAAGAAGAAGAAGAAGATTACCACCAACAATGGCTCCGTCAAGGACAACGAGGCCTTAGCTATTTCTGCTCCAGGAGGCTCAGCCTCTGAGGAGGACGATGCCGATGAACACAGAGCCGAAACCACAAGTAAAAAACCTAACGCCTCGAAATCGAAGAAAATTAAACGTAACCATGCCAAGAAAGAAGAGAATGGTTATGCTGCCGAAGAAGAAGAAGCCGAGGAGAAGATTTGTAAATTCCCCATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTTTGATTTGCGTATCAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGTAAAGATGCATATGCGTGCTGTGCTCAGGATCATAAGAAGTCTCTTGCTTACAAGCATCTATGTAACGTTCCTATTCTCTATTTTGATGCTGCTGTTGCTCCAATTACTGGCTTAAGGGACATGAATTATACTAATGCGTTGTGGAGGATTACTGATTTGTGTTATCTGTACATTGCTTTATGCTATCAAAGAGAATTTCTACCGCGGCTGAAAGCTTTAGTAGTAAGATTCTCCTTTCTTGTTGCAGCATCAGTAGTTGGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAATTAAAATTCGAAGATGCGTTAAAGAAAAGAAGCATGGCAGAATCAGGGAAAGATTAGGTTTCTTTGTCTTTTAATTTGAACACTTCATATTGTTCTTTGGATGTGTAATACTTAGGCATCTTTCTTGTCATGTCAATGGGAATCCAAGGAAGTTAGATACAAACAAAATACACTTTTTTTCCTCCGTACAGTTCTGTAAGTTTATTAACGACATCTCAAATCTAACATCCAT

Coding sequence (CDS)

ATGGCTTCATCCAAAAAGTCAAGTATTGCTACTGAAGCCAAGAGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAACCAAGACCCACAACAATGCCAGAAAATCCGACAACGATGATTCAAAGAAGAAGAAGAAGAAGAAGAAGATTACCACCAACAATGGCTCCGTCAAGGACAACGAGGCCTTAGCTATTTCTGCTCCAGGAGGCTCAGCCTCTGAGGAGGACGATGCCGATGAACACAGAGCCGAAACCACAAGTAAAAAACCTAACGCCTCGAAATCGAAGAAAATTAAACGTAACCATGCCAAGAAAGAAGAGAATGGTTATGCTGCCGAAGAAGAAGAAGCCGAGGAGAAGATTTGTAAATTCCCCATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTTTGATTTGCGTATCAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGTAAAGATGCATATGCGTGCTGTGCTCAGGATCATAAGAAGTCTCTTGCTTACAAGCATCTATGTAACGTTCCTATTCTCTATTTTGATGCTGCTGTTGCTCCAATTACTGGCTTAAGGGACATGAATTATACTAATGCGTTGTGGAGGATTACTGATTTGTGTTATCTGTACATTGCTTTATGCTATCAAAGAGAATTTCTACCGCGGCTGAAAGCTTTAGTAGTAAGATTCTCCTTTCTTGTTGCAGCATCAGTAGTTGGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAATTAAAATTCGAAGATGCGTTAAAGAAAAGAAGCATGGCAGAATCAGGGAAAGATTAG

Protein sequence

MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKKITTNNGSVKDNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKIKRNHAKKEENGYAAEEEEAEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKKSLAYKHLCNVPILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALCYQREFLPRLKALVVRFSFLVAASVVGKRKRYDFLSDFVPEKLKFEDALKKRSMAESGKD

Homology

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BLAST of CmUC02G046650 vs. NCBI nr
Match: XP_038902902.1 (DNA polymerase epsilon subunit C [Benincasa hispida])

HSP 1 Score: 307.8 bits (787), Expect = 9.9e-80
Identity = 197/285 (69.12%), Postives = 203/285 (71.23%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDS-KKKKKKKKITTNNGSVKD 60
           MASSKKSS  TEAKSKEAGTSKP PKTKTHNNARKSD DDS KKKKKKKKI+T NGSVKD
Sbjct: 44  MASSKKSS--TEAKSKEAGTSKPTPKTKTHNNARKSDKDDSNKKKKKKKKISTINGSVKD 103

Query: 61  NEALAISAPG-GSASEEDDADEHRAETTSKKPNASKSKKIKRNHAKKEENGYAA-EEEEA 120
           NEALA S PG  SASEE DADE RAETTS KPN SKSKK++RNH KKEENGYAA EEEEA
Sbjct: 104 NEALATSPPGSASASEEVDADEDRAETTSGKPNTSKSKKVQRNHVKKEENGYAAEEEEEA 163

Query: 121 EEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKKSL 180
           EEKI KFPMHRIKKIMRDEN DLRINQEALFLVNKASEMFLVQFCKDAYACCAQD KKSL
Sbjct: 164 EEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSL 223

Query: 181 AYKHLCNVPILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALCYQREFLPRLKALVV 240
           AYKHL                                                       
Sbjct: 224 AYKHL------------------------------------------------------- 264

Query: 241 RFSFLVAASVVGKRKRYDFLSDFVPEKLKFEDALKKRSMAESGKD 283
                  +SVV KRKRYDFLSDFVPEKLKFEDALK+R+MAESGKD
Sbjct: 284 -------SSVVCKRKRYDFLSDFVPEKLKFEDALKERNMAESGKD 264

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BLAST of CmUC02G046650 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 302.0 bits (772), Expect = 5.4e-78
Identity = 191/286 (66.78%), Postives = 202/286 (70.63%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK--ITTNNGSVK 60
           MASSKKSS  TEAK KEAGTSKPAPK KTHNNAR SD + SKKKKKKKK  I+TNNGSVK
Sbjct: 1   MASSKKSS--TEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVK 60

Query: 61  DNEALAISAPGGSASEEDD-ADEHRAETTSKKPNASKSKKIKRNHAKKEENGYA-AEEEE 120
           DNE LA+S PGGSASE+DD ADE +AETTS+K   SKSKK+KRNHAK+E+NGYA  EEEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKKS 180
           AEEKI KFPMHRIKKIMRDEN DLRINQEALFLVNKASEMFLVQFCKDAYACCAQD KKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLCNVPILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALCYQREFLPRLKALV 240
           LAYKHL                                                      
Sbjct: 181 LAYKHL------------------------------------------------------ 222

Query: 241 VRFSFLVAASVVGKRKRYDFLSDFVPEKLKFEDALKKRSMAESGKD 283
                   +SVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 241 --------SSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CmUC02G046650 vs. NCBI nr
Match: XP_004149539.2 (chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.0e-76
Identity = 190/287 (66.20%), Postives = 201/287 (70.03%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK----ITTNNGS 60
           MASSKKSS  TEAKSKE GTSKP+PK KTHNNAR SD D SKKKKKKKK    I+TNNGS
Sbjct: 1   MASSKKSS--TEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGS 60

Query: 61  VKDNEALAISAPGGSASEE-DDADEHRAETTSKKPNASKSKKIKRNHAKKEENGYAAEEE 120
           VKDN ALA+SAPG SASE+ D ADE +AETTS+K N SKSKK+KRNHAK+E+N YAA EE
Sbjct: 61  VKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAA-EE 120

Query: 121 EAEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKK 180
           EAEEKI KFPMHRIKKIMRDEN DLRINQEALFLVNKASEMFLVQFCKDAYACCAQD KK
Sbjct: 121 EAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKK 180

Query: 181 SLAYKHLCNVPILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALCYQREFLPRLKAL 240
           SLAYKHL                                                     
Sbjct: 181 SLAYKHL----------------------------------------------------- 222

Query: 241 VVRFSFLVAASVVGKRKRYDFLSDFVPEKLKFEDALKKRSMAESGKD 283
                    +SVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 241 ---------SSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CmUC02G046650 vs. NCBI nr
Match: KAA0035335.1 (DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA polymerase epsilon subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 6.9e-73
Identity = 168/219 (76.71%), Postives = 183/219 (83.56%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK--ITTNNGSVK 60
           MASSKKSS  TEAK KEAGTSKPAPK KTHNNAR SD + SKKKKKKKK  I+TNNGSVK
Sbjct: 1   MASSKKSS--TEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVK 60

Query: 61  DNEALAISAPGGSASEEDD-ADEHRAETTSKKPNASKSKKIKRNHAKKEENGYA-AEEEE 120
           DNE LA+S PGGSASE+DD ADE +AETTS+K   SKSKK+KRNHAK+E+NGYA  EEEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKKS 180
           AEEKI KFPMHRIKKIMRDEN DLRINQEALFLVNKASEMFLVQFCKDAYACCAQD KKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLCNVPILYFDAAV-APITGLRDMNYTNALWRITD 215
           LAYKHLCNV +LYFDA V  P+      ++ +  W  T+
Sbjct: 181 LAYKHLCNVSVLYFDAPVYFPLLLYAPCSFASLAWTHTE 217

[Close]

BLAST of CmUC02G046650 vs. NCBI nr
Match: XP_022986059.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-66
Identity = 177/299 (59.20%), Postives = 191/299 (63.88%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKK---KKKKITTN---- 60
           MASSKKSS  +EAKSKEAGTSKPAPK KTHNN   ++N+  K  K   KKKK+++N    
Sbjct: 1   MASSKKSS--SEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKH 60

Query: 61  --NGSVKDNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKIKRNHAKKEENGYA 120
             NGSVK+NE L ISAPG       DA+E R ETTSK PN SKSKK+KRNH KKEENGYA
Sbjct: 61  TSNGSVKENEVLPISAPG-------DAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYA 120

Query: 121 AE--------EEEAEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCK 180
            E        EEEAEEKI KFPM+RIKKIMRDEN DLRINQEALFLVNKA+EMFLVQFCK
Sbjct: 121 EEEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCK 180

Query: 181 DAYACCAQDHKKSLAYKHLCNVPILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALC 240
           DAYACCAQD KKSLAYKHL                                         
Sbjct: 181 DAYACCAQDRKKSLAYKHL----------------------------------------- 228

Query: 241 YQREFLPRLKALVVRFSFLVAASVVGKRKRYDFLSDFVPEKLKFEDALKKRSMAESGKD 283
                                +SVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 241 ---------------------SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]

BLAST of CmUC02G046650 vs. ExPASy Swiss-Prot
Match: Q9CQ36 (DNA polymerase epsilon subunit 4 OS=Mus musculus OX=10090 GN=Pole4 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.2e-04
Identity = 20/65 (30.77%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 120 KICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKKSLAY 179
           ++ + P+ R+K +++ +       QEA+F++ +A+E+F+    KDAY C  Q  +K+L  
Sbjct: 38  RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 97

Query: 180 KHLCN 185
           + L N
Sbjct: 98  RDLDN 102

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BLAST of CmUC02G046650 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.6e-78
Identity = 191/286 (66.78%), Postives = 202/286 (70.63%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK--ITTNNGSVK 60
           MASSKKSS  TEAK KEAGTSKPAPK KTHNNAR SD + SKKKKKKKK  I+TNNGSVK
Sbjct: 1   MASSKKSS--TEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVK 60

Query: 61  DNEALAISAPGGSASEEDD-ADEHRAETTSKKPNASKSKKIKRNHAKKEENGYA-AEEEE 120
           DNE LA+S PGGSASE+DD ADE +AETTS+K   SKSKK+KRNHAK+E+NGYA  EEEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKKS 180
           AEEKI KFPMHRIKKIMRDEN DLRINQEALFLVNKASEMFLVQFCKDAYACCAQD KKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLCNVPILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALCYQREFLPRLKALV 240
           LAYKHL                                                      
Sbjct: 181 LAYKHL------------------------------------------------------ 222

Query: 241 VRFSFLVAASVVGKRKRYDFLSDFVPEKLKFEDALKKRSMAESGKD 283
                   +SVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 241 --------SSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CmUC02G046650 vs. ExPASy TrEMBL
Match: A0A0A0KCQ2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 5.0e-77
Identity = 190/287 (66.20%), Postives = 201/287 (70.03%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK----ITTNNGS 60
           MASSKKSS  TEAKSKE GTSKP+PK KTHNNAR SD D SKKKKKKKK    I+TNNGS
Sbjct: 1   MASSKKSS--TEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGS 60

Query: 61  VKDNEALAISAPGGSASEE-DDADEHRAETTSKKPNASKSKKIKRNHAKKEENGYAAEEE 120
           VKDN ALA+SAPG SASE+ D ADE +AETTS+K N SKSKK+KRNHAK+E+N YAA EE
Sbjct: 61  VKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAA-EE 120

Query: 121 EAEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKK 180
           EAEEKI KFPMHRIKKIMRDEN DLRINQEALFLVNKASEMFLVQFCKDAYACCAQD KK
Sbjct: 121 EAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKK 180

Query: 181 SLAYKHLCNVPILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALCYQREFLPRLKAL 240
           SLAYKHL                                                     
Sbjct: 181 SLAYKHL----------------------------------------------------- 222

Query: 241 VVRFSFLVAASVVGKRKRYDFLSDFVPEKLKFEDALKKRSMAESGKD 283
                    +SVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 241 ---------SSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CmUC02G046650 vs. ExPASy TrEMBL
Match: A0A5A7T1L3 (DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00250 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 3.3e-73
Identity = 168/219 (76.71%), Postives = 183/219 (83.56%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK--ITTNNGSVK 60
           MASSKKSS  TEAK KEAGTSKPAPK KTHNNAR SD + SKKKKKKKK  I+TNNGSVK
Sbjct: 1   MASSKKSS--TEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVK 60

Query: 61  DNEALAISAPGGSASEEDD-ADEHRAETTSKKPNASKSKKIKRNHAKKEENGYA-AEEEE 120
           DNE LA+S PGGSASE+DD ADE +AETTS+K   SKSKK+KRNHAK+E+NGYA  EEEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKKS 180
           AEEKI KFPMHRIKKIMRDEN DLRINQEALFLVNKASEMFLVQFCKDAYACCAQD KKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLCNVPILYFDAAV-APITGLRDMNYTNALWRITD 215
           LAYKHLCNV +LYFDA V  P+      ++ +  W  T+
Sbjct: 181 LAYKHLCNVSVLYFDAPVYFPLLLYAPCSFASLAWTHTE 217

[Close]

BLAST of CmUC02G046650 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 6.1e-67
Identity = 177/299 (59.20%), Postives = 191/299 (63.88%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKK---KKKKITTN---- 60
           MASSKKSS  +EAKSKEAGTSKPAPK KTHNN   ++N+  K  K   KKKK+++N    
Sbjct: 1   MASSKKSS--SEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKH 60

Query: 61  --NGSVKDNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKIKRNHAKKEENGYA 120
             NGSVK+NE L ISAPG       DA+E R ETTSK PN SKSKK+KRNH KKEENGYA
Sbjct: 61  TSNGSVKENEVLPISAPG-------DAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYA 120

Query: 121 AE--------EEEAEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCK 180
            E        EEEAEEKI KFPM+RIKKIMRDEN DLRINQEALFLVNKA+EMFLVQFCK
Sbjct: 121 EEEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCK 180

Query: 181 DAYACCAQDHKKSLAYKHLCNVPILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALC 240
           DAYACCAQD KKSLAYKHL                                         
Sbjct: 181 DAYACCAQDRKKSLAYKHL----------------------------------------- 228

Query: 241 YQREFLPRLKALVVRFSFLVAASVVGKRKRYDFLSDFVPEKLKFEDALKKRSMAESGKD 283
                                +SVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 241 ---------------------SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]

BLAST of CmUC02G046650 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.0e-65
Identity = 177/294 (60.20%), Postives = 188/294 (63.95%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPA------PKTKTHNNARKSDNDDSKKKKKKKKIT--- 60
           MASSKKSS  TEAKSKEAGTSK A       KTKT +NA KSD D SKK   KKKI+   
Sbjct: 1   MASSKKSS--TEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKK 60

Query: 61  -TNNGSVKDNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKIKRNHAKKEENGY 120
             NNGS ++N+   ISAP  SAS EDDADE R ETTS+K N+SKSKK+KRNH KKEENGY
Sbjct: 61  HANNGSAEENDVFEISAP-DSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGY 120

Query: 121 AAEEEE---AEEKICKFPMHRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYA 180
             EEEE    EEKI KFPMHRIKKI RDEN DLRINQEALFLVNKA+EMFLVQFCKDAYA
Sbjct: 121 EEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYA 180

Query: 181 CCAQDHKKSLAYKHLCNVPILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALCYQRE 240
           CCAQD KKSLAYKHL                                             
Sbjct: 181 CCAQDRKKSLAYKHL--------------------------------------------- 229

Query: 241 FLPRLKALVVRFSFLVAASVVGKRKRYDFLSDFVPEKLKFEDALKKRSMAESGK 282
                            +SVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGK
Sbjct: 241 -----------------SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229

[Close]

BLAST of CmUC02G046650 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 58.5 bits (140), Expect = 9.8e-09
Identity = 76/276 (27.54%), Postives = 115/276 (41.67%), Query Frame = 0


Query: 9   IATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKKITTNNGSVKDNEALAISAP 68
           + +  K KE          K    +++S    +KK   K  I      + +   ++ S+ 
Sbjct: 1   MVSSKKPKEKKARSDVVVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYE---ISESSS 60

Query: 69  GGSASEEDDADEHRAE--TTSKKPNASKSKKIKRNHAKKEENGYAAEEEEAEEKICKFPM 128
             S  E    DE +      SK+ N  KS  I    +K  E     ++  AE+   KFPM
Sbjct: 61  SDSVEEAIRGDEAKKSNGVVSKRGN-GKSVGIPTKTSKNREE----DDGGAEDAKIKFPM 120

Query: 129 HRIKKIMRDENFDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDHKKSLAYKHLCNVP 188
           +RI++IMR +N   +I Q+A+FLVNKA+EMF+ +F ++AY    +D KK + YKHL    
Sbjct: 121 NRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHL---- 180

Query: 189 ILYFDAAVAPITGLRDMNYTNALWRITDLCYLYIALCYQREFLPRLKALVVRFSFLVAAS 248
                                                                     +S
Sbjct: 181 ----------------------------------------------------------SS 206

Query: 249 VVGKRKRYDFLSDFVPEKLKFEDALK--KRSMAESG 281
           VV   +RY+FL+D VPEKLK E AL+  +R M ++G
Sbjct: 241 VVSNDQRYEFLADSVPEKLKAEAALEEWERGMTDAG 206

The following BLAST results are available for this feature:

BLAST of CmUC02G046650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902902.1	9.9e-80	69.12	DNA polymerase epsilon subunit C [Benincasa hispida]	[more]
XP_008463933.1	5.4e-78	66.78	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]
XP_004149539.2	1.0e-76	66.20	chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]	[more]
KAA0035335.1	6.9e-73	76.71	DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA poly...	[more]
XP_022986059.1	1.3e-66	59.20	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CmUC02G046650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQ36	9.2e-04	30.77	DNA polymerase epsilon subunit 4 OS=Mus musculus OX=10090 GN=Pole4 PE=1 SV=1	[more]

BLAST of CmUC02G046650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKU7	2.6e-78	66.78	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A0A0KCQ2	5.0e-77	66.20	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G2944...	[more]
A0A5A7T1L3	3.3e-73	76.71	DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1JF10	6.1e-67	59.20	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1CGZ0	2.0e-65	60.20	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]

BLAST of CmUC02G046650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	9.8e-09	27.54	nuclear factor Y, subunit C10	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..44
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 245..279 coord: 16..184
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 245..279 coord: 16..184
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 109..263 e-value: 2.3E-17 score: 65.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 88..182
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 123..183 e-value: 4.0E-14 score: 52.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G046650.1	CmUC02G046650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity