CmUC02G045260 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G045260
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Thylakoid soluble phosphoprotein TSP
Location	CmU531Chr02: 33190445 .. 33190738 (+)
RNA-Seq Expression	CmUC02G045260
Synteny	CmUC02G045260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCTACCAATCGCATTCTCTCCGGCCGCTGGACGTGTGTTCGCAGCCACGGCGGCTAAGGGTGCCGGCGAAAGCAAGAAGGAAAAGGGCCTTCTTGATTGGATCATCGGAAGCTTGAATAAGGATCAGCTTCTTGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGCAAGAACGCCGCCGCAGGTAACGGCAGTGGTACCGTCCGCGGTGGCCGGAAGAATTCCGTCCAAGTTCCTCCGAAGAAGAACGGCGGCGTGTTTGGTGGTCTCTTTGCCAAGAAAGAATGA

mRNA sequence

ATGGCCTCTCTACCAATCGCATTCTCTCCGGCCGCTGGACGTGTGTTCGCAGCCACGGCGGCTAAGGGTGCCGGCGAAAGCAAGAAGGAAAAGGGCCTTCTTGATTGGATCATCGGAAGCTTGAATAAGGATCAGCTTCTTGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGCAAGAACGCCGCCGCAGGTAACGGCAGTGGTACCGTCCGCGGTGGCCGGAAGAATTCCGTCCAAGTTCCTCCGAAGAAGAACGGCGGCGTGTTTGGTGGTCTCTTTGCCAAGAAAGAATGA

Coding sequence (CDS)

ATGGCCTCTCTACCAATCGCATTCTCTCCGGCCGCTGGACGTGTGTTCGCAGCCACGGCGGCTAAGGGTGCCGGCGAAAGCAAGAAGGAAAAGGGCCTTCTTGATTGGATCATCGGAAGCTTGAATAAGGATCAGCTTCTTGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGCAAGAACGCCGCCGCAGGTAACGGCAGTGGTACCGTCCGCGGTGGCCGGAAGAATTCCGTCCAAGTTCCTCCGAAGAAGAACGGCGGCGTGTTTGGTGGTCTCTTTGCCAAGAAAGAATGA

Protein sequence

MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKNAAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE

Homology

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BLAST of CmUC02G045260 vs. NCBI nr
Match: XP_004143212.1 (uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical protein Csa_020752 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 4.1e-41
Identity = 91/97 (93.81%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
          AA+GNG+G+VRGGRKNSVQVPPKKNGG FGGLFAKK+
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

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BLAST of CmUC02G045260 vs. NCBI nr
Match: XP_008464052.1 (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 uncharacterized protein E6C27_scaffold89G00830 [Cucumis melo var. makuwa] >TYK15410.1 uncharacterized protein E5676_scaffold571G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 89/97 (91.75%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
            +GNG+GTVR GRKNSVQ+PPKKNGGVFGGLFAKK+
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CmUC02G045260 vs. NCBI nr
Match: XP_038901860.1 (uncharacterized protein LOC120088545 [Benincasa hispida])

HSP 1 Score: 172.2 bits (435), Expect = 2.2e-39
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASLPIAFSPAA RVFAATAAKGAGESKKE+GLLDWIIGSLNKDQLLETDPVLQKVEGK 
Sbjct: 1  MASLPIAFSPAAVRVFAATAAKGAGESKKEQGLLDWIIGSLNKDQLLETDPVLQKVEGK- 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
          AAAGNGSGTVRGGRKNSVQVPPKKNGG FGGLFAKK+
Sbjct: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGGFGGLFAKKD 96

[Close]

BLAST of CmUC02G045260 vs. NCBI nr
Match: XP_023532336.1 (uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 9.7e-35
Identity = 83/97 (85.57%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGESKKEKG+LDWI+G + KDQLLETDPVLQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGESKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
            A NG GTVRGG+KNSVQVPPKKN GVFGGLFAKK+
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of CmUC02G045260 vs. NCBI nr
Match: XP_022947653.1 (uncharacterized protein LOC111451452 [Cucurbita moschata] >XP_023007425.1 uncharacterized protein LOC111499927 [Cucurbita maxima] >KAG6605422.1 hypothetical protein SDJN03_02739, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035371.1 hypothetical protein SDJN02_02167, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
            A NG GTVRGG+KNSVQVPPKKN GVFGGLFAKK+
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of CmUC02G045260 vs. ExPASy TrEMBL
Match: A0A0A0KC59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41
Identity = 91/97 (93.81%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
          AA+GNG+G+VRGGRKNSVQVPPKKNGG FGGLFAKK+
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of CmUC02G045260 vs. ExPASy TrEMBL
Match: A0A5A7V5S9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00530 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 89/97 (91.75%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
            +GNG+GTVR GRKNSVQ+PPKKNGGVFGGLFAKK+
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CmUC02G045260 vs. ExPASy TrEMBL
Match: A0A1S3CKK5 (uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 89/97 (91.75%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
            +GNG+GTVR GRKNSVQ+PPKKNGGVFGGLFAKK+
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CmUC02G045260 vs. ExPASy TrEMBL
Match: A0A6J1L2X7 (uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
            A NG GTVRGG+KNSVQVPPKKN GVFGGLFAKK+
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of CmUC02G045260 vs. ExPASy TrEMBL
Match: A0A6J1G777 (uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC111451452 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGLFAKKE 98
            A NG GTVRGG+KNSVQVPPKKN GVFGGLFAKK+
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of CmUC02G045260 vs. TAIR 10
Match: AT3G47070.1 (LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNK-DQLLETDPVLQKVEGK 60
          ++SL ++F+PA  RV+A +   G+G  K+EK  +D+++G + K DQ  ET+P+L+KV+ K
Sbjct: 2  VSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDEK 61

Query: 61 NAAAGNGSGTVRGGRKNSVQVPPKKNGGVFGGL 93
                G GTVRGG+ ++    PKK+ G FGGL
Sbjct: 62 EGTTTGGRGTVRGGKNSAPTPVPKKSEGGFGGL 94

The following BLAST results are available for this feature:

BLAST of CmUC02G045260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143212.1	4.1e-41	93.81	uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical ...	[more]
XP_008464052.1	1.7e-39	91.75	PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 unc...	[more]
XP_038901860.1	2.2e-39	94.85	uncharacterized protein LOC120088545 [Benincasa hispida]	[more]
XP_023532336.1	9.7e-35	85.57	uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]	[more]
XP_022947653.1	2.8e-34	84.54	uncharacterized protein LOC111451452 [Cucurbita moschata] >XP_023007425.1 unchar...	[more]

BLAST of CmUC02G045260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G045260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC59	2.0e-41	93.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1	[more]
A0A5A7V5S9	8.3e-40	91.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKK5	8.3e-40	91.75	uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=...	[more]
A0A6J1L2X7	1.4e-34	84.54	uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927...	[more]
A0A6J1G777	1.4e-34	84.54	uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]

BLAST of CmUC02G045260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47070.1	1.0e-13	43.01	LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast ...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 20..95 e-value: 2.9E-23 score: 82.3
IPR021584	Thylakoid soluble phosphoprotein TSP9	PANTHER	PTHR36370	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..90
None	No IPR available	PANTHER	PTHR36370:SF1	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..97
IPR037244	Thylakoid soluble phosphoprotein TSP9 superfamily	SUPERFAMILY	144256	TSP9-like	coord: 20..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G045260.1	CmUC02G045260.1	mRNA