CmUC02G040350 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G040350
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Trafficking protein particle complex subunit
Location	CmU531Chr02: 28194522 .. 28198719 (+)
RNA-Seq Expression	CmUC02G040350
Synteny	CmUC02G040350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAAAAGTGGTCGTAATTACATCTATCTGCCATTGGCGACTCCATCCAGTCTCAAGCTCCCAAAACTCACTCACTGGCTTAAGATCGGCGACTGGATTTTACGCCTTCCAATCTACGTTCTTCCCCACACCGATTATACCCATTCACAACCATATTCATTCTCATTTCCTTCATAATACTTCAGAACTTTGATAGATCTAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGTAATCATCCAATTCAAATTACTTGTTTATGCAATTTCAAACACAAATTTCTGTTAATTCCCTCCTGGATTGAGAATTTTGATGCTTTATTTCGTTTCTGGGAACCCCAAATTAAGATTTCAGTTTTCTGATCTCATATAACCAAGATATATAAATCGGATTTGAGTGGAATTATTGTATTTATTCTCACTGGGTATTCTATGTGGATTCAATCTCTTACTGGGGGTGTTTGAAAATTTAGGATTATGGGTCTGCTGGACGAATGGACACAAATGATAGTTTGAGAGTGGCCAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTGTCGCCTATAGCCGGTTGTTCGGGTATTGAACTTCTTGAAGCCGATACATTCGACCTCCATTGCTTCCAGTCACTTACTGGTACATTTTTCCTTCCTTTCCTTTGTTTACTTTTTTGCTTCAAAGATACAATTAAGTACCAAAATGGGAAAAAACAACTGAAGTTCTAGAAACGTTATTGATCTTTCCTTTTTCTTCTTGTTTCGAGTTCAAGAATATATGATAGTGGGGATTCAAACATAAATTTGGTTGAGATTATTATGGCTTGAGTAGTTGAATTATGCTTAGATGGGTAGAGATGATATTGATCATCTATTAGAAAAATATAGCTGTTAGAGTGTCGATATAATATAAAATTTACCTTCACTCATTTGCTTAAGCTTTTGGGCCAATAACCGTAGTTTTTTGTAATCAATCGTACTATAGTCTTCTTCACAGATATGATTGTCCTGTCAAACTTTTGGGGGTGGGAGGGAACTAGTATGAGGTGCAACAGAAACTGCAAAATTAGTTTTCGATACTTGACTCTGTAACTGTTTGTGTTTAATCTTTTGTCATTAAACTTTGCTGCGTGCAAAGAGGGAGGAGAGTTAAAGATTGTTACGATATGCATATGAATGCCTTTTGATCTCGAGGACTAATCGTTTCTCCATTATCAACCTACATAAGAAATAGAAATGCTTGTTTTGGAGTATAATTTTGTATTTCCTTGTTCAACAATTTGTGATGTTTGCAAAGTCTCACGACAGTAACTTTCATGTTATAGTCATATGCTAGTTCTTAATAAAGAAGCTGAATCATGGATGGAAATTTTCTATTGCAGGGACAAAGTTTTTTGTTGTGTGTGAGCCCGGAGCACAGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACTTAGCGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGAGCTTAGGACATCCTTGATTTTGTCAGTATTGACCATCCACAATTCAAGAATGAAAGGCCTATGATATTATTGTGCAAAATTCTTGATAATTTGCCGTCCTTAATGCTAAATGTACTCCATTCCTAGTGAATCGTGTGAGATTTGGTGGAAATAGAATGTTTCTTTTCAGTGTTGTTCACCAGAAACTCAAGGTTAATTTTATACCCAAATTTTTGTCAATTGCATACAGATCTGGATCCAGTTAAATGACAGAGCAACGTCATGTTATAAGCTTTTGGGGCCTGGTGAACTAAGCAGCCGAAGTATTTACATTTTACTTCGACCAATTTTAGATAAATGAAAGCATCAATTTCACGATGTTCATCAATGAAAGCATAATTGCCAGCAAAATTTTCAGTTTTTCTGCATGCCACTGAACCAATTGTTATGATATTATTACTGACTCAATGCTGGTTCCTATTTGTGTATATAAAGGGTAGCTATAGTTCAAGCCTTCTCAACAGATGAAGAGTTTGTGTTAGCTCAGTGAACATGTTTTAGTAAATGTCAATATTGTGGTCAGGTAAGCCCAGAGTTGTGTAATGAGGCTGTGTGCACTTGTTATCCATGAAAGATATCTGACAGCGATGACCGAATAGATCAAGTGGCGAGAATATGACCCGTGACCACAGCCATTGCAATGAGTATCCTCAATTCCCTCTTCCTCTCAACCAACGGGCTCTCTGGCATTGGTGGTCTACAGAAAGCCTCTCCTCTCGGGGCTGCTCGTTCAACCTCAACCATATTGGCATAGTCTCTCTGATTGAAGTAAGAAATCGCCTGCATGAATGCCTGCCTGACCTGGCTGCAACCAATTCTGCAAGTCTCGAGAGCAGCCCCCGTTGCTGGATCAGTTGTGCTGGCTTGAAGTTCCACAATGAACTGATAGGTATTGGTGGTGTTTCTCAGAACTTGGTCATTTGCTATCAAGGTCAGGCCAACATAATCTGCTGGACCTCTCAGATTTTCATTGAAGGTTCTGTTGCAAAACCCATAATCCTCATTTTGACGGCATATTCGATCGATCCTTTGCTGTGTTGCCGGGTCACCCAAAGCAGGGTGAACGATGAGGAGAATGAGGAACAAGGTTGGAAGTTGTGAAGAATATGCTGAGAAAGCCATAGTTACTTGGCAACTAATGTTTGAAACTCTGAGAAAGCAGAGCAAGGTGAGAGTAGCTTTTATAGGATATGATACTCTGCTGCTGTTTAATGCATTTTATTGCAATTCTTGGCATATTATCTCCTAATTTTCCCTTCATTTTCTTGTCCATGATTTCAGTTCAAATAACCCAAATTAAGTAAAAAGAAAGATATACATGAATTATTGGTTTATACTAAGCTAGAATAGATCTTTTGCATATTGTTTTGGAAAATATAAGTTGAGAGAGGCAAATCTGATCTGCATTCCTTAGTGTGGTACATCCAAGAATTTCAATTCCTTCCTTATATGTTATACCCTTTATCTAAACTTCCATGATTCACCTTTCTTTTCCATATATTCCCAAATGTTTCCAAGTTTATCTCTTTCATCATTTACTTTTCTTTCTCTAGGGATAAATCATCTCAATGCGTAGAAGAAAGGTTCAACTAACAAACTTATTTAAACCTTGTTCATCAAGCAAACTAAAACAGAATAATAAGACCAATACGGGATAGAGCAAAAAGAAGGAGAAAAAAAACATCACTAGTGTTTTATGAGCTCTTGTTTTTATCAAAGATTTACTGAATGTGGCCATTAGCAGCAGCACATTGATTTACACTTATTGAAATATCACAGCATAGGATCATAAGTTTGTTCATGACTTCAATATGCAATGAGTTGATTCTGATGGCTTGACTACACCTTATAACAAGTCTCTTTGATGCTACCAATGGACCATTGTCTCTGAAAATCTTCTGCTGTGAGAACTGATGAGCCTTTTGAATATTTGCTTGAATTTCACGGTAATACTTCACACAACGCTCGAAACTTCTCTTCTGCTCAGGATCACTCTCATTCTTACTTAGTTTGGAGAAGGAATCAAGGTTTTGATTTGCTTGTTTCTTTGTCAGATTGCTGGATATAAGCGAGAGCATAGGAAGGTCGGCCGACATGGTACGAGAATCGTTACTGAGTATTTTCTGGCAGAGCGACGGATTGGAGGTTTTAGAGCAAATGGTGACCAGATTTTCACGGGGGATTCCATGAGAAGGGACAATGGTTAGGAAAAAAGCTGCCAAAAGAAGAGCAGGGATGAAAGAGGTAAGATTTTGATAGCAATTCATTGCTGGTTTCTTAAAAGAACAGATTGTATAGGCAGTGGCTTTCTTTGGGAAACTAAGAAGCTGTTTAAATAATGAGGTTGGGAGAAAAAGTAACTGATTCTGCTTTGTAGGATGCCACTTTATTTTCTTCAAGTACATTACAGGGAAAAAGTTTAGGATCTTTGTTTTTTCTTGGAAAAACAGCCACATGGGGTACATGCAATTAAAACTCTCAACAAAGGGAATAGCTATACATCTCCTTCATTTTAGATATGACTAAACTAGAATTTTGCCTTC

mRNA sequence

CATAAAAGTGGTCGTAATTACATCTATCTGCCATTGGCGACTCCATCCAGTCTCAAGCTCCCAAAACTCACTCACTGGCTTAAGATCGGCGACTGGATTTTACGCCTTCCAATCTACGTTCTTCCCCACACCGATTATACCCATTCACAACCATATTCATTCTCATTTCCTTCATAATACTTCAGAACTTTGATAGATCTAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAATGATAGTTTGAGAGTGGCCAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTGTCGCCTATAGCCGGTTGTTCGGGTATTGAACTTCTTGAAGCCGATACATTCGACCTCCATTGCTTCCAGTCACTTACTGGGACAAAGTTTTTTGTTGTGTGTGAGCCCGGAGCACAGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACTTAGCGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGAGCTTAGGACATCCTTGATTTTGTCAGTATTGACCATCCACAATTCAAGAATGAAAGGCCTATGATATTATTGTGCAAAATTCTTGATAATTTGCCGTCCTTAATGCTAAATGTACTCCATTCCTAGTGAATCGTGTGAGATTTGGTGGAAATAGAATGTTTCTTTTCAGTGTTGTTCACCAGAAACTCAAGGTTAATTTTATACCCAAATTTTTGTCAATTGCATACAGATCTGGATCCAGTTAAATGACAGAGCAACGTCATGTTATAAGCTTTTGGGGCCTGGTGAACTAAGCAGCCGAAGTATTTACATTTTACTTCGACCAATTTTAGATAAATGAAAGCATCAATTTCACGATGTTCATCAATGAAAGCATAATTGCCAGCAAAATTTTCAGTTTTTCTGCATGCCACTGAACCAATTGTTATGATATTATTACTGACTCAATGCTGGTTCCTATTTGTGTATATAAAGGGTAGCTATAGTTCAAGCCTTCTCAACAGATGAAGAGTTTGTGTTAGCTCAGTGAACATGTTTTAGTAAATGTCAATATTGTGGTCAGGTAAGCCCAGAGTTGTGTAATGAGGCTGTGTGCACTTGTTATCCATGAAAGATATCTGACAGCGATGACCGAATAGATCAAGTGGCGAGAATATGACCCGTGACCACAGCCATTGCAATGAGTATCCTCAATTCCCTCTTCCTCTCAACCAACGGGCTCTCTGGCATTGGTGGTCTACAGAAAGCCTCTCCTCTCGGGGCTGCTCGTTCAACCTCAACCATATTGGCATAGTCTCTCTGATTGAAGTAAGAAATCGCCTGCATGAATGCCTGCCTGACCTGGCTGCAACCAATTCTGCAAGTCTCGAGAGCAGCCCCCGTTGCTGGATCAGTTGTGCTGGCTTGAAGTTCCACAATGAACTGATAGGTATTGGTGGTGTTTCTCAGAACTTGGTCATTTGCTATCAAGGTCAGGCCAACATAATCTGCTGGACCTCTCAGATTTTCATTGAAGGTTCTGTTGCAAAACCCATAATCCTCATTTTGACGGCATATTCGATCGATCCTTTGCTGTGTTGCCGGGTCACCCAAAGCAGGGTGAACGATGAGGAGAATGAGGAACAAGGTTGGAAGTTGTGAAGAATATGCTGAGAAAGCCATAGTTACTTGGCAACTAATGTTTGAAACTCTGAGAAAGCAGAGCAAGCATAGGATCATAAGTTTGTTCATGACTTCAATATGCAATGAGTTGATTCTGATGGCTTGACTACACCTTATAACAAGTCTCTTTGATGCTACCAATGGACCATTGTCTCTGAAAATCTTCTGCTGTGAGAACTGATGAGCCTTTTGAATATTTGCTTGAATTTCACGATTGCTGGATATAAGCGAGAGCATAGGAAGGTCGGCCGACATGGTACGAGAATCGTTACTGAGTATTTTCTGGCAGAGCGACGGATTGGAGGTTTTAGAGCAAATGGTGACCAGATTTTCACGGGGGATTCCATGAGAAGGGACAATGGTTAGGAAAAAAGCTGCCAAAAGAAGAGCAGGGATGAAAGAGGTAAGATTTTGATAGCAATTCATTGCTGGTTTCTTAAAAGAACAGATTGTATAGGCAGTGGCTTTCTTTGGGAAACTAAGAAGCTGTTTAAATAATGAGGTTGGGAGAAAAAGTAACTGATTCTGCTTTGTAGGATGCCACTTTATTTTCTTCAAGTACATTACAGGGAAAAAGTTTAGGATCTTTGTTTTTTCTTGGAAAAACAGCCACATGGGGTACATGCAATTAAAACTCTCAACAAAGGGAATAGCTATACATCTCCTTCATTTTAGATATGACTAAACTAGAATTTTGCCTTC

Coding sequence (CDS)

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAATGATAGTTTGAGAGTGGCCAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTGTCGCCTATAGCCGGTTGTTCGGGTATTGAACTTCTTGAAGCCGATACATTCGACCTCCATTGCTTCCAGTCACTTACTGGGACAAAGTTTTTTGTTGTGTGTGAGCCCGGAGCACAGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACTTAGCGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGA

Protein sequence

MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

Homology

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BLAST of CmUC02G040350 vs. NCBI nr
Match: KGN61053.2 (hypothetical protein Csa_021294 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 6.9e-74
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSG+E
Sbjct: 444 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 503

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG QHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 504 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 563

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQKDRVALLGR
Sbjct: 564 ELFDINLAQAVQKDRVALLGR 584

[Close]

BLAST of CmUC02G040350 vs. NCBI nr
Match: XP_004144741.1 (trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1 trafficking protein particle complex subunit 4 [Benincasa hispida])

HSP 1 Score: 287.3 bits (734), Expect = 6.9e-74
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG QHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of CmUC02G040350 vs. NCBI nr
Match: XP_022156391.1 (trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156392.1 trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156393.1 trafficking protein particle complex subunit 4 [Momordica charantia])

HSP 1 Score: 286.2 bits (731), Expect = 1.5e-73
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL+QAVQKDRVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

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BLAST of CmUC02G040350 vs. NCBI nr
Match: XP_008453237.1 (PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA0048113.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa] >TYJ96439.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG QHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of CmUC02G040350 vs. NCBI nr
Match: XP_041018648.1 (trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+AGCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG QHMEGLLK IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKAIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLTQAVQKDRVALLGR 141

[Close]

BLAST of CmUC02G040350 vs. ExPASy Swiss-Prot
Match: Q54UU1 (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=trappc4 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-34
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 4   IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAG-CSGIELL 63
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP++G  SGIE++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 64  EADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCEL 123
           E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELYTD+VLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 124 FDINL 128
           FD  L
Sbjct: 123 FDYKL 127

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BLAST of CmUC02G040350 vs. ExPASy Swiss-Prot
Match: Q2TBL9 (Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CmUC02G040350 vs. ExPASy Swiss-Prot
Match: Q9ES56 (Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CmUC02G040350 vs. ExPASy Swiss-Prot
Match: Q69BT7 (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CmUC02G040350 vs. ExPASy Swiss-Prot
Match: Q9Y296 (Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-31
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 87  GAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CmUC02G040350 vs. ExPASy TrEMBL
Match: A0A0A0LJ20 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2G034720 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.4e-74
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG QHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of CmUC02G040350 vs. ExPASy TrEMBL
Match: A0A6J1DUU4 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111023297 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 7.5e-74
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL+QAVQKDRVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]

BLAST of CmUC02G040350 vs. ExPASy TrEMBL
Match: A0A5A7TWY1 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00730 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 9.8e-74
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG QHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of CmUC02G040350 vs. ExPASy TrEMBL
Match: A0A1S3BVQ7 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103494018 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 9.8e-74
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG QHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of CmUC02G040350 vs. ExPASy TrEMBL
Match: A0A6J1KK16 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111493886 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.8e-72
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPG  HMEGLLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLVQAVQKDRVALLGR 141

[Close]

BLAST of CmUC02G040350 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-71
Identity = 127/141 (90.07%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGIE 60
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP+ GCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSL GTKFFVVCEPG  HME LL+YIYELYTD+VLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL QAVQ DRVALLGR
Sbjct: 121 ELFDINLTQAVQSDRVALLGR 141

[Close]

BLAST of CmUC02G040350 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 38/144 (26.39%), Postives = 67/144 (46.53%), Query Frame = 0


Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+         
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  -----AGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLK 124
                 GCS       +T+ L   ++ +G K  +V  P    +   LKYIY LY ++V+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLAQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

[Close]

BLAST of CmUC02G040350 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 38/144 (26.39%), Postives = 67/144 (46.53%), Query Frame = 0


Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+         
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  -----AGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGAQHMEGLLKYIYELYTDFVLK 124
                 GCS       +T+ L   ++ +G K  +V  P    +   LKYIY LY ++V+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLAQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

The following BLAST results are available for this feature:

BLAST of CmUC02G040350 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61053.2	6.9e-74	97.87	hypothetical protein Csa_021294 [Cucumis sativus]	[more]
XP_004144741.1	6.9e-74	97.87	trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1...	[more]
XP_022156391.1	1.5e-73	97.16	trafficking protein particle complex subunit 4 [Momordica charantia] >XP_0221563...	[more]
XP_008453237.1	2.0e-73	97.16	PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA004...	[more]
XP_041018648.1	1.0e-72	96.45	trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans reg...	[more]

BLAST of CmUC02G040350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54UU1	3.3e-34	52.80	Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44...	[more]
Q2TBL9	2.6e-31	58.49	Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 ...	[more]
Q9ES56	2.6e-31	58.49	Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trapp...	[more]
Q69BT7	2.6e-31	58.49	Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=...	[more]
Q9Y296	5.8e-31	57.55	Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC...	[more]

BLAST of CmUC02G040350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ20	3.4e-74	97.87	Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]
A0A6J1DUU4	7.5e-74	97.16	Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5A7TWY1	9.8e-74	97.16	Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BVQ7	9.8e-74	97.16	Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1KK16	1.8e-72	95.74	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CmUC02G040350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02280.1	1.2e-71	90.07	SNARE-like superfamily protein	[more]
AT1G51160.1	1.5e-10	26.39	SNARE-like superfamily protein	[more]
AT1G51160.2	1.5e-10	26.39	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007233	Trafficking protein particle complex subunit	SMART	SM01399	Sybindin_2	coord: 4..134 e-value: 1.0E-70 score: 250.9
IPR007233	Trafficking protein particle complex subunit	PFAM	PF04099	Sybindin	coord: 4..133 e-value: 8.5E-53 score: 178.1
IPR007233	Trafficking protein particle complex subunit	PANTHER	PTHR23249	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT	coord: 1..141
None	No IPR available	GENE3D	3.30.450.70		coord: 2..133 e-value: 1.3E-48 score: 167.0
None	No IPR available	PANTHER	PTHR23249:SF17	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATED	coord: 1..141
None	No IPR available	CDD	cd14856	TRAPPC4_synbindin	coord: 5..130 e-value: 5.48311E-85 score: 242.424
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G040350.1	CmUC02G040350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0030008	TRAPP complex