CmUC02G039310 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G039310
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	50S ribosomal protein L10
Location	CmU531Chr02: 26981330 .. 26982034 (-)
RNA-Seq Expression	CmUC02G039310
Synteny	CmUC02G039310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTTCTCTTCTAAGCTTTACCTCCTTCACACCCCCTTCTTCTTCTTCTCAAATTCTAACCCTAAACCGACCCACAAACCCATTTTCCTTCTCTCTCCCCCGCCATTCTACCAGTCAAAGCCGCCATTATCGCGGCCTCAAGGTCGCTGCCGCCATTTCCCGCACTAAGAAAGAGGAAACCGTGGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCCGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTCCGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCCAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACCTCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCGGCCGCAATTAAGCCTTATAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGCAGGGTCCGGCGTCAAGCTTGGTTGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTCTGAAGGCCTACGTGAAGAAATTGGAGGAGCAAGGCGGCGGCGCTGGACAGTGA

mRNA sequence

ATGGAAGCTTCTCTTCTAAGCTTTACCTCCTTCACACCCCCTTCTTCTTCTTCTCAAATTCTAACCCTAAACCGACCCACAAACCCATTTTCCTTCTCTCTCCCCCGCCATTCTACCAGTCAAAGCCGCCATTATCGCGGCCTCAAGGTCGCTGCCGCCATTTCCCGCACTAAGAAAGAGGAAACCGTGGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCCGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTCCGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCCAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACCTCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCGGCCGCAATTAAGCCTTATAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGCAGGGTCCGGCGTCAAGCTTGGTTGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTCTGAAGGCCTACGTGAAGAAATTGGAGGAGCAAGGCGGCGGCGCTGGACAGTGA

Coding sequence (CDS)

ATGGAAGCTTCTCTTCTAAGCTTTACCTCCTTCACACCCCCTTCTTCTTCTTCTCAAATTCTAACCCTAAACCGACCCACAAACCCATTTTCCTTCTCTCTCCCCCGCCATTCTACCAGTCAAAGCCGCCATTATCGCGGCCTCAAGGTCGCTGCCGCCATTTCCCGCACTAAGAAAGAGGAAACCGTGGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCCGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTCCGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCCAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACCTCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCGGCCGCAATTAAGCCTTATAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGCAGGGTCCGGCGTCAAGCTTGGTTGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTCTGAAGGCCTACGTGAAGAAATTGGAGGAGCAAGGCGGCGGCGCTGGACAGTGA

Protein sequence

MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ

Homology

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BLAST of CmUC02G039310 vs. NCBI nr
Match: XP_004143603.1 (50S ribosomal protein L10, chloroplastic [Cucumis sativus] >KGN50478.1 hypothetical protein Csa_000689 [Cucumis sativus])

HSP 1 Score: 440.7 bits (1132), Expect = 8.1e-120
Identity = 224/235 (95.32%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSS-QILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKK 60
           MEASL++FTSFTPPSSSS QILTLNRPTNP SFSLPRHST+Q+RHYRGLKV+AAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           ETMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

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BLAST of CmUC02G039310 vs. NCBI nr
Match: XP_038893368.1 (50S ribosomal protein L10, chloroplastic [Benincasa hispida])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 225/234 (96.15%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MEASLLSFTSFTPP-SSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKK 60
           MEASLLSFTSFTPP SSSSQILTLNRPTNPFSFS PRHST+Q+RHYRGL VAAAISRTKK
Sbjct: 39  MEASLLSFTSFTPPSSSSSQILTLNRPTNPFSFSPPRHSTNQTRHYRGLMVAAAISRTKK 98

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 99  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 158

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 159 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 218

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAG 234
           ETMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG+G
Sbjct: 219 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGSG 272

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BLAST of CmUC02G039310 vs. NCBI nr
Match: XP_008445837.1 (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo] >KAA0034043.1 50S ribosomal protein L10 [Cucumis melo var. makuwa])

HSP 1 Score: 437.2 bits (1123), Expect = 9.0e-119
Identity = 222/234 (94.87%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           MEASL+SFTSFTPP  SSQILTLNRPTNP SFSLPRHST+Q+RHYRGLKVAAAISRTKKE
Sbjct: 1   MEASLISFTSFTPP-PSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKE 60

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSWE
Sbjct: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FKALE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           TMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 TMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

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BLAST of CmUC02G039310 vs. NCBI nr
Match: KAG6600094.1 (50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 419.9 bits (1078), Expect = 1.5e-113
Identity = 213/233 (91.42%), Postives = 221/233 (94.85%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           MEASLLSF SF  PSSSSQILTLNRPTNP SFS  RHST+Q RHYR LKVA AISRTKKE
Sbjct: 1   MEASLLSFPSFKTPSSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKE 60

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE
Sbjct: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAG 234
           TMPSRAEVYAKMLGLL+GPASSLVGT+QAPAR++LMVLKAYV+KLEEQGGG G
Sbjct: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233

[Close]

BLAST of CmUC02G039310 vs. NCBI nr
Match: XP_022990377.1 (50S ribosomal protein L10, chloroplastic [Cucurbita maxima])

HSP 1 Score: 418.7 bits (1075), Expect = 3.3e-113
Identity = 215/234 (91.88%), Postives = 223/234 (95.30%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           MEASLLSF SF  P SSSQILTLNRPTNP SFS  RHST+Q RHYR LKVAAAISRTKKE
Sbjct: 1   MEASLLSFPSFKTP-SSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKKE 60

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE
Sbjct: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           TMPSRAEVYAKMLGLL+GPASSLVGT+QAPAR++LMVLKAYV+KLEEQGGG GQ
Sbjct: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

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BLAST of CmUC02G039310 vs. ExPASy Swiss-Prot
Match: O80362 (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 9.4e-87
Identity = 163/223 (73.09%), Postives = 191/223 (85.65%), Query Frame = 0


Query: 9   TSFTPPSSSSQILTLNRPTN-PFSFSLPRHSTSQSRHYRGLKVAAAISRTKKEETVETVK 68
           T FT PSS+S     +  ++   S +LP H   + +  + L + +AISRTKKEETVETVK
Sbjct: 4   TFFTLPSSTSHSYPFSLKSHFNNSLTLPTHPHFKPKS-KNLTIRSAISRTKKEETVETVK 63

Query: 69  QQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMK 128
           QQLEDCYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WEALKPCMK
Sbjct: 64  QQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEALKPCMK 123

Query: 129 GMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPSRAE 188
           GMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP++FKALET+P+RAE
Sbjct: 124 GMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALETLPTRAE 183

Query: 189 VYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGG 231
           +YA++LG L+GPAS++VGTIQAPAR L+MVLKAYVKKLEE+GG
Sbjct: 184 IYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

[Close]

BLAST of CmUC02G039310 vs. ExPASy Swiss-Prot
Match: Q9FY50 (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-77
Identity = 151/229 (65.94%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKV-AAAISRTKK 60
           ME +LLSF+S   P    +I TL               TS S +Y  L V  +A+SR KK
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLT------------PKTSNSPNYPRLPVIRSAVSRNKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVE VK  LE+C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT W
Sbjct: 61  EETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK L
Sbjct: 121 EALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVL 180

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQ 229
           ETMP+RAEVYAKMLG LQ PA +LV T+QAPARE++MVL AY+KKLE++
Sbjct: 181 ETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CmUC02G039310 vs. ExPASy Swiss-Prot
Match: P82139 (50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 PE=1 SV=2)

HSP 1 Score: 283.1 bits (723), Expect = 2.8e-75
Identity = 136/203 (67.00%), Postives = 167/203 (82.27%), Query Frame = 0


Query: 26  PTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKEETVETVKQQLEDCYLLAGIKYKGFT 85
           P  P + + PR   +  +H     + AAISRTKKEETVETV++ LE+CYLLA I YKGFT
Sbjct: 29  PFKPNNLTFPR---TTHKHPTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFT 88

Query: 86  VKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIK 145
           VKQFQ+LR++LPE + LIVAKNTLV KA++ T W A+KPCMKGMN WLFVHSEEIP AIK
Sbjct: 89  VKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIK 148

Query: 146 PYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPSRAEVYAKMLGLLQGPASSLVG 205
           PYR FQKE+KLEDNDFTGA FEGK+YGP + K LETMPS+AE++AK+LG L+ P S+LVG
Sbjct: 149 PYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVG 208

Query: 206 TIQAPARELLMVLKAYVKKLEEQ 229
           T+QAPAR+L+ +LKAY+KKLE++
Sbjct: 209 TLQAPARDLVFLLKAYIKKLEDE 228

[Close]

BLAST of CmUC02G039310 vs. ExPASy Swiss-Prot
Match: B1ZGR8 (50S ribosomal protein L10 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplJ PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-17
Identity = 60/174 (34.48%), Postives = 86/174 (49.43%), Query Frame = 0


Query: 54  ISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLI-VAKNTLVLK 113
           + RT K + V T+        ++    YKG TV   Q+LR  + +    + VAKN L   
Sbjct: 1   MDRTAKADLVSTLNGVFTTNAVVVVAHYKGLTVADMQKLRSQMKQAGATVKVAKNRLASI 60

Query: 114 AIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 173
           A++GT   ++KP +KG    L  +S +  AA K   DF K    +     G         
Sbjct: 61  ALDGTDVASIKPLLKGPT--LLAYSSDPVAAAKVAVDFAKTN--DKLVILGGAMGTTALN 120

Query: 174 PDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLE 227
           PD  KAL T+PS  E+ AK++GL+Q PA+ +   + APA +L  V  AY KK E
Sbjct: 121 PDGVKALATLPSLDELRAKLVGLIQAPATKVAQVVNAPAAKLARVFGAYAKKDE 170

[Close]

BLAST of CmUC02G039310 vs. ExPASy Swiss-Prot
Match: B1LY45 (50S ribosomal protein L10 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=rplJ PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.9e-17
Identity = 59/174 (33.91%), Postives = 88/174 (50.57%), Query Frame = 0


Query: 54  ISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLI-VAKNTLVLK 113
           + RT K + V T+     +  ++    YKG TV   Q+LR  + +    + VAKN+L   
Sbjct: 1   MDRTAKADLVSTLNGVFNESAVVVVAHYKGLTVADMQKLRAQMKQAGATVKVAKNSLAGI 60

Query: 114 AIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 173
           A++GT   ++KP +KG    L  +S +  AA K   DF K    +     G         
Sbjct: 61  ALDGTDVASIKPLLKGPT--LLAYSGDPVAAAKVAVDFAKAN--DKLVILGGAMGKTALN 120

Query: 174 PDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLE 227
           PD  KAL ++PS  E+ AK++GL+Q PA+ +   + APA +L  V  AY KK E
Sbjct: 121 PDGVKALASLPSLDELRAKIVGLVQAPATKIAQVVNAPASKLARVFGAYAKKDE 170

[Close]

BLAST of CmUC02G039310 vs. ExPASy TrEMBL
Match: A0A0A0KLL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 3.9e-120
Identity = 224/235 (95.32%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSS-QILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKK 60
           MEASL++FTSFTPPSSSS QILTLNRPTNP SFSLPRHST+Q+RHYRGLKV+AAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           ETMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

[Close]

BLAST of CmUC02G039310 vs. ExPASy TrEMBL
Match: A0A5A7SUB8 (50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00270 PE=3 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.4e-119
Identity = 222/234 (94.87%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           MEASL+SFTSFTPP  SSQILTLNRPTNP SFSLPRHST+Q+RHYRGLKVAAAISRTKKE
Sbjct: 1   MEASLISFTSFTPP-PSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKE 60

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSWE
Sbjct: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FKALE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           TMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 TMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CmUC02G039310 vs. ExPASy TrEMBL
Match: A0A1S3BDM0 (50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738 PE=3 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.4e-119
Identity = 222/234 (94.87%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           MEASL+SFTSFTPP  SSQILTLNRPTNP SFSLPRHST+Q+RHYRGLKVAAAISRTKKE
Sbjct: 1   MEASLISFTSFTPP-PSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKE 60

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSWE
Sbjct: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FKALE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           TMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 TMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CmUC02G039310 vs. ExPASy TrEMBL
Match: A0A6J1JII9 (50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487249 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.6e-113
Identity = 215/234 (91.88%), Postives = 223/234 (95.30%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           MEASLLSF SF  P SSSQILTLNRPTNP SFS  RHST+Q RHYR LKVAAAISRTKKE
Sbjct: 1   MEASLLSFPSFKTP-SSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKKE 60

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE
Sbjct: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 235
           TMPSRAEVYAKMLGLL+GPASSLVGT+QAPAR++LMVLKAYV+KLEEQGGG GQ
Sbjct: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CmUC02G039310 vs. ExPASy TrEMBL
Match: A0A6J1FTN1 (50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448014 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111
Identity = 211/233 (90.56%), Postives = 220/233 (94.42%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKVAAAISRTKKE 60
           MEASLLSF SF  P SSSQILTLNRPTNP SFS  RHST+Q RHYR LKVA AISRTKKE
Sbjct: 1   MEASLLSFPSFKTP-SSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKE 60

Query: 61  ETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+WE
Sbjct: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAG 234
           TMPSRAEVYAKMLGLL+GPASSLVGT+QAPAR++LMVLKAYV+KLEEQGGG G
Sbjct: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CmUC02G039310 vs. TAIR 10
Match: AT5G13510.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 290.8 bits (743), Expect = 9.7e-79
Identity = 151/229 (65.94%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSSQILTLNRPTNPFSFSLPRHSTSQSRHYRGLKV-AAAISRTKK 60
           ME +LLSF+S   P    +I TL               TS S +Y  L V  +A+SR KK
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLT------------PKTSNSPNYPRLPVIRSAVSRNKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVE VK  LE+C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT W
Sbjct: 61  EETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK L
Sbjct: 121 EALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVL 180

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQ 229
           ETMP+RAEVYAKMLG LQ PA +LV T+QAPARE++MVL AY+KKLE++
Sbjct: 181 ETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CmUC02G039310 vs. TAIR 10
Match: AT3G12370.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 188.0 bits (476), Expect = 8.9e-48
Identity = 92/146 (63.01%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 67  KQQLEDCYLLAGIKYKGFTVKQFQELRRSLPE--TSKLIVAKNTLVLKAIEGTSWEALKP 126
           K  LE+C+ + GI Y G +VKQ QELR  L E   +KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 127 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPS 186
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P D+K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 187 RAEVYAKMLGLLQGPASSLVGTIQAP 211
           RA+VY  MLG L  PA  LV  +QAP
Sbjct: 135 RADVYGMMLGSLHWPALDLVNALQAP 160

The following BLAST results are available for this feature:

BLAST of CmUC02G039310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143603.1	8.1e-120	95.32	50S ribosomal protein L10, chloroplastic [Cucumis sativus] >KGN50478.1 hypotheti...	[more]
XP_038893368.1	1.4e-119	96.15	50S ribosomal protein L10, chloroplastic [Benincasa hispida]	[more]
XP_008445837.1	9.0e-119	94.87	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo] >KAA0034043.1...	[more]
KAG6600094.1	1.5e-113	91.42	50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022990377.1	3.3e-113	91.88	50S ribosomal protein L10, chloroplastic [Cucurbita maxima]	[more]

BLAST of CmUC02G039310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80362	9.4e-87	73.09	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 P...	[more]
Q9FY50	1.4e-77	65.94	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P82139	2.8e-75	67.00	50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 P...	[more]
B1ZGR8	6.0e-17	34.48	50S ribosomal protein L10 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 1...	[more]
B1LY45	7.9e-17	33.91	50S ribosomal protein L10 OS=Methylobacterium radiotolerans (strain ATCC 27329 /...	[more]

BLAST of CmUC02G039310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL5	3.9e-120	95.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1	[more]
A0A5A7SUB8	4.4e-119	94.87	50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3BDM0	4.4e-119	94.87	50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738...	[more]
A0A6J1JII9	1.6e-113	91.88	50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FTN1	1.1e-111	90.56	50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CmUC02G039310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13510.1	9.7e-79	65.94	Ribosomal protein L10 family protein	[more]
AT3G12370.1	8.9e-48	63.01	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.250.290		coord: 183..226 e-value: 2.2E-12 score: 48.5
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 53..182 e-value: 2.7E-30 score: 107.2
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 56..224
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 56..151 e-value: 1.2E-20 score: 73.4
IPR001790	Ribosomal protein L10P	PANTHER	PTHR11560	39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL	coord: 29..231
IPR001790	Ribosomal protein L10P	CDD	cd05797	Ribosomal_L10	coord: 55..212 e-value: 1.29463E-48 score: 155.355
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 54..214 score: 18.624521

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G039310.1	CmUC02G039310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome