CmUC02G037680 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G037680
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	VQ domain-containing protein
Location	CmU531Chr02: 24725527 .. 24725802 (+)
RNA-Seq Expression	CmUC02G037680
Synteny	CmUC02G037680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTCACTCCTTTTCTTTTCACTACTCCCAGCCGGAGCAGGCCGTTCACAAGCCGTCGAAGAAGGCGGTGGCGCCTCCGCGGCCGACGCAGCCCCAGGTTTATAAGGTGGACCCCATCAACTTCCGGGATGTTGTTCAGAAGCTAACGGCGGCTCCTGAGTTTCAAGATCGCCGCCTTCAAGCCATGCCGGCTCCACGGCCCAATCTCTCCAATCCGCCGCCTCACAATGGGTACTTGGGACAGTCCGCTGAGAGATATTACCATAATTAA

mRNA sequence

ATGGAACCTCACTCCTTTTCTTTTCACTACTCCCAGCCGGAGCAGGCCGTTCACAAGCCGTCGAAGAAGGCGGTGGCGCCTCCGCGGCCGACGCAGCCCCAGGTTTATAAGGTGGACCCCATCAACTTCCGGGATGTTGTTCAGAAGCTAACGGCGGCTCCTGAGTTTCAAGATCGCCGCCTTCAAGCCATGCCGGCTCCACGGCCCAATCTCTCCAATCCGCCGCCTCACAATGGGTACTTGGGACAGTCCGCTGAGAGATATTACCATAATTAA

Coding sequence (CDS)

ATGGAACCTCACTCCTTTTCTTTTCACTACTCCCAGCCGGAGCAGGCCGTTCACAAGCCGTCGAAGAAGGCGGTGGCGCCTCCGCGGCCGACGCAGCCCCAGGTTTATAAGGTGGACCCCATCAACTTCCGGGATGTTGTTCAGAAGCTAACGGCGGCTCCTGAGTTTCAAGATCGCCGCCTTCAAGCCATGCCGGCTCCACGGCCCAATCTCTCCAATCCGCCGCCTCACAATGGGTACTTGGGACAGTCCGCTGAGAGATATTACCATAATTAA

Protein sequence

MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLSNPPPHNGYLGQSAERYYHN

Homology

[Close]

BLAST of CmUC02G037680 vs. NCBI nr
Match: KAA0045761.1 (VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 66/104 (63.46%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
           MEPHSFSF+Y+    +V K  KKAVAPPRPT PQVYKVDPINFRDVVQKLTAAPEFQDRR
Sbjct: 1   MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61  LQAMPAPRPNLSNPPP----------------HNGYLGQSAERY 89
           LQAMP PRPN+++                   H  +LGQS+ERY
Sbjct: 61  LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYHGFFLGQSSERY 104

[Close]

BLAST of CmUC02G037680 vs. NCBI nr
Match: KAE8651906.1 (hypothetical protein Csa_006780 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-22
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 1  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
          MEPHSFSF+Y      V K  KK VAPPRP+ PQVYKVDPINFRDVVQKLTAAP+FQDRR
Sbjct: 1  MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60

Query: 61 LQAMPAPRPNL----SNPPPHNG------YLGQSAERY 89
          LQAMP PRP+L    S P   +G      +LGQS+ RY
Sbjct: 61 LQAMPPPRPDLADQSSRPRDLSGEGEGGFFLGQSSHRY 98

[Close]

BLAST of CmUC02G037680 vs. NCBI nr
Match: KAG6605217.1 (hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 7.0e-19
Identity = 58/87 (66.67%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MEPH-------SFSFHYSQPEQAVHKPS----KKAVAPPRPTQPQVYKVDPINFRDVVQK 60
          MEPH       SFSF+YS P+  VHK S    KKAVAPP P  P+VYKV+PI FRDVVQK
Sbjct: 1  MEPHSYSSSSSSFSFYYSDPD-GVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQK 60

Query: 61 LTAAPEFQDRRLQAMPAPRPNLSNPPP 77
          LT+ PE+ D RL+AMPAPRPNLSNPPP
Sbjct: 61 LTSPPEYLDPRLKAMPAPRPNLSNPPP 86

[Close]

BLAST of CmUC02G037680 vs. NCBI nr
Match: XP_022149539.1 (VQ motif-containing protein 29 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 2.8e-15
Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 1  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
          MEPHS S   S P     KP  +AVAP  PT PQ+YKV+P++FRDVVQKLTAAPEFQDRR
Sbjct: 1  MEPHSSS---SSP---AVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRR 60

Query: 61 LQAMPAPRPNLSNPPPHNG----YLGQSAERYY 90
          LQAMPAPRP   +PPP +     + G+ A  YY
Sbjct: 61 LQAMPAPRP---SPPPGSAACTDFSGEGAVIYY 84

[Close]

BLAST of CmUC02G037680 vs. NCBI nr
Match: KAA8522582.1 (hypothetical protein F0562_013057 [Nyssa sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 19  KPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLS 73
           KP KK +AP  PT P++YKVD +NFR+VVQKLTAAPEFQ RRLQ++  P  NLS
Sbjct: 49  KPWKKPIAPLPPTPPRIYKVDSVNFREVVQKLTAAPEFQSRRLQSVAPPPLNLS 102

[Close]

BLAST of CmUC02G037680 vs. ExPASy TrEMBL
Match: A0A5A7TW54 (VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00880 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.4e-25
Identity = 66/104 (63.46%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
           MEPHSFSF+Y+    +V K  KKAVAPPRPT PQVYKVDPINFRDVVQKLTAAPEFQDRR
Sbjct: 1   MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61  LQAMPAPRPNLSNPPP----------------HNGYLGQSAERY 89
           LQAMP PRPN+++                   H  +LGQS+ERY
Sbjct: 61  LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYHGFFLGQSSERY 104

[Close]

BLAST of CmUC02G037680 vs. ExPASy TrEMBL
Match: A0A0A0LPS3 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.4e-18
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 17 VHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNL----S 76
          V K  KK VAPPRP+ PQVYKVDPINFRDVVQKLTAAP+FQDRRLQAMP PRP+L    S
Sbjct: 7  VQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDLADQSS 66

Query: 77 NPPPHNG------YLGQSAERY 89
           P   +G      +LGQS+ RY
Sbjct: 67 RPRDLSGEGEGGFFLGQSSHRY 88

[Close]

BLAST of CmUC02G037680 vs. ExPASy TrEMBL
Match: A0A6J1D7B4 (VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 1  MEPHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
          MEPHS S   S P     KP  +AVAP  PT PQ+YKV+P++FRDVVQKLTAAPEFQDRR
Sbjct: 1  MEPHSSS---SSP---AVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRR 60

Query: 61 LQAMPAPRPNLSNPPPHNG----YLGQSAERYY 90
          LQAMPAPRP   +PPP +     + G+ A  YY
Sbjct: 61 LQAMPAPRP---SPPPGSAACTDFSGEGAVIYY 84

[Close]

BLAST of CmUC02G037680 vs. ExPASy TrEMBL
Match: A0A5J4ZYQ3 (VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.4e-10
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 19  KPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPAPRPNLS 73
           KP KK +AP  PT P++YKVD +NFR+VVQKLTAAPEFQ RRLQ++  P  NLS
Sbjct: 49  KPWKKPIAPLPPTPPRIYKVDSVNFREVVQKLTAAPEFQSRRLQSVAPPPLNLS 102

[Close]

BLAST of CmUC02G037680 vs. ExPASy TrEMBL
Match: A0A2N9FPV7 (VQ domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20638 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 3   PHSFSFHYSQPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQ 62
           P  F+       +   KP KK VAP  PT P++YKVDPINFRD+VQKLT A EFQ +RLQ
Sbjct: 30  PQQFNSSLHTVRKPPSKPWKKPVAPLPPTPPRIYKVDPINFRDLVQKLTGANEFQSQRLQ 89

Query: 63  AMPAPRPNLSNPPP 77
           ++  P  N+SN  P
Sbjct: 90  SVAPPPLNVSNTQP 103

[Close]

BLAST of CmUC02G037680 vs. TAIR 10
Match: AT4G37710.1 (VQ motif-containing protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.0e-04
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 12 QPEQAVHKPSKKAVAPPRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMP 66
          QP + + +P+    +P  P  P VY+V+P+NF+ +VQ+LT APE +   +QA P
Sbjct: 37 QPSKPLKRPA--ISSPLNPMHPHVYRVEPVNFKVLVQRLTGAPEHE--TVQAKP 86

[Close]

BLAST of CmUC02G037680 vs. TAIR 10
Match: AT2G22880.1 (VQ motif-containing protein )

HSP 1 Score: 40.4 bits (93), Expect = 8.9e-04
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 4  HSFSFHYSQPEQAVHKPSKKAVAP-PRPTQPQVYKVDPINFRDVVQKLTAAPEFQDRRLQ 63
          H+ S H ++ + A  KP KK V   P+   P+VY+V+P+NF+++VQ+LT A + +    Q
Sbjct: 11 HNSSLHSTRKQPA--KPWKKPVTGLPQRMHPKVYRVEPVNFKELVQRLTGAEDVEQEVHQ 70

Query: 64 AMPAP 68
              P
Sbjct: 71 VEAKP 73

The following BLAST results are available for this feature:

BLAST of CmUC02G037680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045761.1	1.1e-24	63.46	VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-c...	[more]
KAE8651906.1	1.8e-22	65.31	hypothetical protein Csa_006780 [Cucumis sativus]	[more]
KAG6605217.1	7.0e-19	66.67	hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022149539.1	2.8e-15	60.22	VQ motif-containing protein 29 [Momordica charantia]	[more]
KAA8522582.1	1.7e-09	66.67	hypothetical protein F0562_013057 [Nyssa sinensis]	[more]

BLAST of CmUC02G037680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G037680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TW54	5.4e-25	63.46	VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0LPS3	8.4e-18	67.07	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=...	[more]
A0A6J1D7B4	1.3e-15	60.22	VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE...	[more]
A0A5J4ZYQ3	8.4e-10	66.67	VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV...	[more]
A0A2N9FPV7	1.4e-09	52.70	VQ domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20638 PE=4 ...	[more]

BLAST of CmUC02G037680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37710.1	4.0e-04	40.74	VQ motif-containing protein	[more]
AT2G22880.1	8.9e-04	36.92	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 31..51 e-value: 2.3E-8 score: 33.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR34794:SF1	EXPRESSED PROTEIN	coord: 17..73
IPR039610	VQ motif-containing protein 29	PANTHER	PTHR34794	EXPRESSED PROTEIN	coord: 17..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G037680.1	CmUC02G037680.1	mRNA