CmUC02G037120 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G037120
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Beta-galactosidase
Location	CmU531Chr02: 23796779 .. 23797165 (-)
RNA-Seq Expression	CmUC02G037120
Synteny	CmUC02G037120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTGAGAGGCGTTACAAGTTCGGGTATCTAACTTGTGAGATATTGAAACCCAGACCAAGGGATTCTCAAGAATGCATTTGGAAAGGAAAGGACTCCCTACTTCGATCACTGCTGATTAACAGTATGGAACCTCAGATAGGGAAACCACTGTTGTATACTGCAATTGCTCTAGACATCTGGGATGCAGTTCAGAAATTATACTTTAAGAGACAGAATGCATCTCGTCTTTACACCTTGCGAAAACATGTTCCTGAGTGCAAACAAGGAACAATGGATGTTACTTCATATTTTAACAAATTGTCCCTTATTTGGCAGGAAATGGATCTGTGTCGCCCTGTGGAGGTGTCCTGTATTCTAAAATTGAGGAAGTTGACCGTGTGA

mRNA sequence

ATGGCACTTGAGAGGCGTTACAAGTTCGGGTATCTAACTTGTGAGATATTGAAACCCAGACCAAGGGATTCTCAAGAATGCATTTGGAAAGGAAAGGACTCCCTACTTCGATCACTGCTGATTAACAGTATGGAACCTCAGATAGGGAAACCACTGTTGTATACTGCAATTGCTCTAGACATCTGGGATGCAGTTCAGAAATTATACTTTAAGAGACAGAATGCATCTCGTCTTTACACCTTGCGAAAACATGTTCCTGAGTGCAAACAAGGAACAATGGATGTTACTTCATATTTTAACAAATTGTCCCTTATTTGGCAGGAAATGGATCTGTGTCGCCCTGTGGAGGTGTCCTGTATTCTAAAATTGAGGAAGTTGACCGTGTGA

Coding sequence (CDS)

ATGGCACTTGAGAGGCGTTACAAGTTCGGGTATCTAACTTGTGAGATATTGAAACCCAGACCAAGGGATTCTCAAGAATGCATTTGGAAAGGAAAGGACTCCCTACTTCGATCACTGCTGATTAACAGTATGGAACCTCAGATAGGGAAACCACTGTTGTATACTGCAATTGCTCTAGACATCTGGGATGCAGTTCAGAAATTATACTTTAAGAGACAGAATGCATCTCGTCTTTACACCTTGCGAAAACATGTTCCTGAGTGCAAACAAGGAACAATGGATGTTACTTCATATTTTAACAAATTGTCCCTTATTTGGCAGGAAATGGATCTGTGTCGCCCTGTGGAGGTGTCCTGTATTCTAAAATTGAGGAAGTTGACCGTGTGA

Protein sequence

MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALDIWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCRPVEVSCILKLRKLTV

Homology

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BLAST of CmUC02G037120 vs. NCBI nr
Match: XP_038899041.1 (uncharacterized protein LOC120086450 [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-43
Identity = 86/120 (71.67%), Postives = 99/120 (82.50%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           M LE R+KFGYLT EI KP P D QECIWKG+DSLLR +LINSME +IG+PLLY A   D
Sbjct: 27  MILEERHKFGYLTGEIPKPVPGDPQECIWKGEDSLLRYVLINSMESRIGRPLLYAATVKD 86

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCRPVEVSCI 120
           IWDAVQ+LY KRQNAS+LYTLRK   +CKQGTMD+TSYFNK+SL+WQEMDLCR +   C+
Sbjct: 87  IWDAVQQLYSKRQNASQLYTLRKQAHKCKQGTMDITSYFNKMSLLWQEMDLCREIVRKCV 146

[Close]

BLAST of CmUC02G037120 vs. NCBI nr
Match: XP_038888140.1 (uncharacterized protein LOC120078031 [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 5.8e-43
Identity = 86/119 (72.27%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           MALE R+KFGYLT EI +PRP D Q+ +WKG+DSLL S+LI+ MEPQIGKPL+Y A A D
Sbjct: 1   MALEGRHKFGYLTNEIPRPRPGDPQKRVWKGEDSLLHSMLIDKMEPQIGKPLIYVATARD 60

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCRPVEVSC 120
           IWDAVQKLY KR+NASRLYTL+K V ECKQGTMD+T YFNK S IWQEMDLCR +   C
Sbjct: 61  IWDAVQKLYSKRKNASRLYTLQKQVHECKQGTMDITFYFNKFSSIWQEMDLCRKIAWDC 119

[Close]

BLAST of CmUC02G037120 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCR 114
           +WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFNKLSL+WQEMDLCR
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCR 298

[Close]

BLAST of CmUC02G037120 vs. NCBI nr
Match: TYK08054.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCR 114
           +WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFNKLSL+WQEMDLCR
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCR 298

[Close]

BLAST of CmUC02G037120 vs. NCBI nr
Match: KAA0034386.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D
Sbjct: 243 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 302

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCR 114
           +WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFNKLSL+WQEMDLCR
Sbjct: 303 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCR 355

[Close]

BLAST of CmUC02G037120 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCR 114
           +WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFNKLSL+WQEMDLCR
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCR 298

[Close]

BLAST of CmUC02G037120 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCR 114
           +WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFNKLSL+WQEMDLCR
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCR 298

[Close]

BLAST of CmUC02G037120 vs. ExPASy TrEMBL
Match: A0A5A7SM64 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00220 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCR 114
           +WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFNKLSL+WQEMDLCR
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCR 298

[Close]

BLAST of CmUC02G037120 vs. ExPASy TrEMBL
Match: A0A5A7V0Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00520 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D
Sbjct: 461 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 520

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCR 114
           +WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFNKLSL+WQEMDLCR
Sbjct: 521 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCR 573

[Close]

BLAST of CmUC02G037120 vs. ExPASy TrEMBL
Match: A0A5A7UGB2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00290 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MALERRYKFGYLTCEILKPRPRDSQECIWKGKDSLLRSLLINSMEPQIGKPLLYTAIALD 60
           M LE RY+FG+LT EI++P P D+ E +WKG+DSL+RS+LINSMEPQIGKPLLY   A D
Sbjct: 215 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 274

Query: 61  IWDAVQKLYFKRQNASRLYTLRKHVPECKQGTMDVTSYFNKLSLIWQEMDLCR 114
           +WD  Q LY KRQNASRLYTLRK V  CKQGT+DVT+YFNKLSL+WQEMDLCR
Sbjct: 275 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCR 327

The following BLAST results are available for this feature:

BLAST of CmUC02G037120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899041.1	1.5e-43	71.67	uncharacterized protein LOC120086450 [Benincasa hispida]	[more]
XP_038888140.1	5.8e-43	72.27	uncharacterized protein LOC120078031 [Benincasa hispida]	[more]
TYJ99952.1	4.1e-41	72.57	Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu...	[more]
TYK08054.1	4.1e-41	72.57	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0034386.1	4.1e-41	72.57	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of CmUC02G037120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G037120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJK7	2.0e-41	72.57	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]
A0A5D3C4T4	2.0e-41	72.57	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00...	[more]
A0A5A7SM64	2.0e-41	72.57	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0...	[more]
A0A5A7V0Y9	2.0e-41	72.57	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00...	[more]
A0A5A7UGB2	2.0e-41	72.57	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055...	[more]

BLAST of CmUC02G037120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 29..110 e-value: 1.8E-7 score: 31.0
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 1..111
None	No IPR available	PANTHER	PTHR37610:SF41	SUBFAMILY NOT NAMED	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G037120.1	CmUC02G037120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0043564	Ku70:Ku80 complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0042162	telomeric DNA binding