CmUC02G036550 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G036550
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Photosystem II reaction center protein L
Location	CmU531Chr02: 22174149 .. 22174552 (-)
RNA-Seq Expression	CmUC02G036550
Synteny	CmUC02G036550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTCATTATTTTTTTTCCTTGATTTTCTTTCCCAATTTGCAATGAAAACTTTTCCCAATTTCATATACCTTTTGGCAATCTCAAAACTAAAAATATAATCTCTTTAAAAAAAATTCAACAAAAATGAAGCTATCATGATTTTTTTTTTCGATAAAACTTATCCTATTTTTACAGTGCGATAGTTGGCTGTTCACGGATTAGCTGTACCTACCGTTTCTTTTTTAGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACAAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

mRNA sequence

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACAAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

Coding sequence (CDS)

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACAAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

Protein sequence

MWGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

Homology

[Close]

BLAST of CmUC02G036550 vs. NCBI nr
Match: YP_009387574.1 (photosystem II protein L [Hansenia weberbaueriana] >YP_009387659.1 photosystem II protein L [Hansenia forbesii] >YP_009387829.1 photosystem II protein L [Hansenia forrestii] >YP_010116922.1 photosystem II protein L [Haplosphaera himalayensis] >QHS71219.1 photosystem II protein L [Haplosphaera phaea] >QPG23974.1 photosystem II protein L [Hansenia oviformis] >ART32526.1 photosystem II protein L [Hansenia weberbaueriana] >ART32611.1 photosystem II protein L [Hansenia forbesii] >ART32781.1 photosystem II protein L [Hansenia forrestii])

HSP 1 Score: 117.1 bits (292), Expect = 5.2e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of CmUC02G036550 vs. NCBI nr
Match: QKD76372.1 (photosystem II protein L [Santalum album] >BBZ90126.1 photosystem II protein L [Santalum boninense])

HSP 1 Score: 116.7 bits (291), Expect = 6.8e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQCNSSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCNSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of CmUC02G036550 vs. NCBI nr
Match: YP_009920018.1 (photosystem II protein L [Cinnamomum longipetiolatum] >QMQ98907.1 photosystem II protein L [Cinnamomum longipetiolatum])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 5  WGQYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 62

[Close]

BLAST of CmUC02G036550 vs. NCBI nr
Match: YP_009860414.1 (photosystem II protein L [Litsea cubeba] >YP_009919936.1 photosystem II protein L [Cinnamomum kotoense] >YP_009920186.1 photosystem II protein L [Litsea garrettii] >QMQ98738.1 photosystem II protein L [Cinnamomum aromaticum] >QKV10051.1 photosystem II protein L [Litsea cubeba] >QMQ98822.1 photosystem II protein L [Cinnamomum kotoense] >QMQ99071.1 photosystem II protein L [Litsea garrettii])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of CmUC02G036550 vs. NCBI nr
Match: WP_222273419.1 (hypothetical protein, partial [Modestobacter marinus])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 5  WGQYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 62

[Close]

BLAST of CmUC02G036550 vs. ExPASy Swiss-Prot
Match: Q7J1C4 (Photosystem II reaction center protein L OS=Acorus calamus OX=4465 GN=psbL PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CmUC02G036550 vs. ExPASy Swiss-Prot
Match: Q6EYW2 (Photosystem II reaction center protein L OS=Agathis robusta OX=60854 GN=psbL PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CmUC02G036550 vs. ExPASy Swiss-Prot
Match: A1EA23 (Photosystem II reaction center protein L OS=Agrostis stolonifera OX=63632 GN=psbL PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CmUC02G036550 vs. ExPASy Swiss-Prot
Match: Q67HN6 (Photosystem II reaction center protein L OS=Ananas comosus OX=4615 GN=psbL PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CmUC02G036550 vs. ExPASy Swiss-Prot
Match: A4QK33 (Photosystem II reaction center protein L OS=Arabis hirsuta OX=78191 GN=psbL PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CmUC02G036550 vs. ExPASy TrEMBL
Match: A0A1Y0B5C9 (Photosystem II reaction center protein L OS=Hansenia forbesii OX=165499 GN=psbL PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of CmUC02G036550 vs. ExPASy TrEMBL
Match: A0A1Y0B539 (Photosystem II reaction center protein L OS=Hansenia weberbaueriana OX=54724 GN=psbL PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of CmUC02G036550 vs. ExPASy TrEMBL
Match: A0A1Y0B5U7 (Photosystem II reaction center protein L OS=Hansenia forrestii OX=1050841 GN=psbL PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of CmUC02G036550 vs. ExPASy TrEMBL
Match: A0A6C0AB03 (Photosystem II reaction center protein L OS=Haplosphaera phaea OX=239646 GN=psbL PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of CmUC02G036550 vs. ExPASy TrEMBL
Match: A0A7S9HVQ3 (Photosystem II protein L OS=Hansenia oviformis OX=1978917 GN=psbL PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]

BLAST of CmUC02G036550 vs. TAIR 10
Match: ATCG00560.1 (photosystem II reaction center protein L )

HSP 1 Score: 73.6 bits (179), Expect = 6.1e-14
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+Q+VELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

The following BLAST results are available for this feature:

BLAST of CmUC02G036550 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009387574.1	5.2e-23	96.55	photosystem II protein L [Hansenia weberbaueriana] >YP_009387659.1 photosystem I...	[more]
QKD76372.1	6.8e-23	96.55	photosystem II protein L [Santalum album] >BBZ90126.1 photosystem II protein L [...	[more]
YP_009920018.1	2.6e-22	94.83	photosystem II protein L [Cinnamomum longipetiolatum] >QMQ98907.1 photosystem II...	[more]
YP_009860414.1	2.6e-22	94.83	photosystem II protein L [Litsea cubeba] >YP_009919936.1 photosystem II protein ...	[more]
WP_222273419.1	2.6e-22	94.83	hypothetical protein, partial [Modestobacter marinus]	[more]

BLAST of CmUC02G036550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7J1C4	2.3e-13	97.37	Photosystem II reaction center protein L OS=Acorus calamus OX=4465 GN=psbL PE=2 ...	[more]
Q6EYW2	2.3e-13	97.37	Photosystem II reaction center protein L OS=Agathis robusta OX=60854 GN=psbL PE=...	[more]
A1EA23	2.3e-13	97.37	Photosystem II reaction center protein L OS=Agrostis stolonifera OX=63632 GN=psb...	[more]
Q67HN6	2.3e-13	97.37	Photosystem II reaction center protein L OS=Ananas comosus OX=4615 GN=psbL PE=3 ...	[more]
A4QK33	2.3e-13	97.37	Photosystem II reaction center protein L OS=Arabis hirsuta OX=78191 GN=psbL PE=3...	[more]

BLAST of CmUC02G036550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1Y0B5C9	2.5e-23	96.55	Photosystem II reaction center protein L OS=Hansenia forbesii OX=165499 GN=psbL ...	[more]
A0A1Y0B539	2.5e-23	96.55	Photosystem II reaction center protein L OS=Hansenia weberbaueriana OX=54724 GN=...	[more]
A0A1Y0B5U7	2.5e-23	96.55	Photosystem II reaction center protein L OS=Hansenia forrestii OX=1050841 GN=psb...	[more]
A0A6C0AB03	2.5e-23	96.55	Photosystem II reaction center protein L OS=Haplosphaera phaea OX=239646 GN=psbL...	[more]
A0A7S9HVQ3	2.5e-23	96.55	Photosystem II protein L OS=Hansenia oviformis OX=1978917 GN=psbL PE=4 SV=1	[more]

BLAST of CmUC02G036550 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00560.1	6.1e-14	94.74	photosystem II reaction center protein L	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003372	Photosystem II PsbL	PFAM	PF02419	PsbL	coord: 24..59 e-value: 9.8E-24 score: 83.1
IPR003372	Photosystem II PsbL	HAMAP	MF_01317	PSII_PsbL	coord: 14..59 score: 16.268564
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
IPR037266	Photosystem II PsbL superfamily	SUPERFAMILY	161017	Photosystem II reaction center protein L, PsbL	coord: 23..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G036550.1	CmUC02G036550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding