Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTGTCCATCCATACTCATGGCAACTTCTAGAGTCATGCTCAATTTAGTGCCTGCTCTAGAAACTTTGGAAGCTATAGTTCCTATTTTTAGAGAATCTATTGCTGAAGTACCTGAATCATCAATTTCCCTTCCTCCAAGCTCTGATGGGTTTAACACTTTTGATCCTAATAGAATGAGTGCAAGGGCACCAACATCTGCCTCAACCTTCAACAATTGCAAGCCCAAAGGACCAATCAGATGGTCTGCTCCAAATCCTAAACACAACGACTTCTTGGAATCAACTATATGTTAA mRNA sequence
ATGTCTTGTCCATCCATACTCATGGCAACTTCTAGAGTCATGCTCAATTTAGTGCCTGCTCTAGAAACTTTGGAAGCTATAGTTCCTATTTTTAGAGAATCTATTGCTGAAGTACCTGAATCATCAATTTCCCTTCCTCCAAGCTCTGATGGGTTTAACACTTTTGATCCTAATAGAATGAGTGCAAGGGCACCAACATCTGCCTCAACCTTCAACAATTGCAAGCCCAAAGGACCAATCAGATGGTCTGCTCCAAATCCTAAACACAACGACTTCTTGGAATCAACTATATGTTAA Coding sequence (CDS)
ATGTCTTGTCCATCCATACTCATGGCAACTTCTAGAGTCATGCTCAATTTAGTGCCTGCTCTAGAAACTTTGGAAGCTATAGTTCCTATTTTTAGAGAATCTATTGCTGAAGTACCTGAATCATCAATTTCCCTTCCTCCAAGCTCTGATGGGTTTAACACTTTTGATCCTAATAGAATGAGTGCAAGGGCACCAACATCTGCCTCAACCTTCAACAATTGCAAGCCCAAAGGACCAATCAGATGGTCTGCTCCAAATCCTAAACACAACGACTTCTTGGAATCAACTATATGTTAA Protein sequence
MSCPSILMATSRVMLNLVPALETLEAIVPIFRESIAEVPESSISLPPSSDGFNTFDPNRMSARAPTSASTFNNCKPKGPIRWSAPNPKHNDFLESTIC
Homology
BLAST of CmUC02G035960 vs. NCBI nr
Match:
KAE8649707.1 (hypothetical protein Csa_012825 [Cucumis sativus])
HSP 1 Score: 101.3 bits (251), Expect = 4.9e-18
Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = 0
Query: 1 MSCPSILMATSRVMLNLVPALETL-EAIVPIFRESIAEVPE--SSISLPPSSDGFNTFDP 60 MS PS ++AT+R ML+L TL E+ + FRESIAEVPE SSISLPP+SD F +FDP Sbjct: 18 MSSPSKIIATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESSSSISLPPTSDEFISFDP 77 Query: 61 NRMSARAPTSASTFNNCKPKGPIRWSAPNPKHN-DFLE-STIC 99 N M ARAP AS +CKPKGPI WSAPNPKHN ++ STIC Sbjct: 78 NGMGARAPLPASLL-DCKPKGPIAWSAPNPKHNIPYVHISTIC 119
BLAST of CmUC02G035960 vs. NCBI nr
Match:
KAE8649709.1 (hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothetical protein Csa_012458, partial [Cucumis sativus] >KGN55007.2 hypothetical protein Csa_012551, partial [Cucumis sativus])
HSP 1 Score: 100.9 bits (250), Expect = 6.4e-18
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = 0
Query: 1 MSCPSILMATSRVMLNLVPALETL-EAIVPIFRESIAEVPE--SSISLPPSSDGFNTFDP 60 MS PS +MAT+R ML+L TL E+ + FRESIAEVPE SSISLPP+SD F +FDP Sbjct: 18 MSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESSSSISLPPTSDEFISFDP 77 Query: 61 NRMSARAPTSASTFNNCKPKGPIRWSAPNPKHN 91 N M ARAP AS +CKPKGPI WSAPNPKHN Sbjct: 78 NGMGARAPLPASLL-DCKPKGPIAWSAPNPKHN 109
BLAST of CmUC02G035960 vs. NCBI nr
Match:
KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0
Query: 1 MSCPSILMATSRVMLNLVPALETLEAIVPIFRESIAEVPESSISLPPSSDGFNTFD-PNR 60 +S PS ++ATSR ML AL+T E+ P+ + PP+S+ F+T PN Sbjct: 19 ISSPSTIIATSRHML----ALDTKES-----------PPQPPMDKPPTSNDFDTLSLPNG 78 Query: 61 MSARAPTSASTFNNCKPKGPIRWSAPNPKHND 92 A P S +CKPKGP+RWS+P+P N+ Sbjct: 79 TKAMPPMPESAVRSCKPKGPVRWSSPSPIRNN 95
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAE8649707.1 4.9e-18 62.14 hypothetical protein Csa_012825 [Cucumis sativus] [more]
KAE8649709.1 6.4e-18 65.59 hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothe... [more]
KAG6595583.1 3.1e-04 39.13 hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
A T G T C T T G T C C A T C C A T A C T C A T G G C A A C T T C T A G A G T C A T G C T C A A T T T A G T G C C T G C T C T A G A A A C T T T G G A A G C T A T A G T T C C T A T T T T T A G A G A A T C T A T T G C T G A A G T A C C T G A A T C A T C A A T T T C C C T T C C T C C A A G C T C T G A T G G G T T T A A C A C T T T T G A T C C T A A T A G A A T G A G T G C A A G G G C A C C A A C A T C T G C C T C A A C C T T C A A C A A T T G C A A G C C C A A A G G A C C A A T C A G A T G G T C T G C T C C A A A T C C T A A A C A C A A C G A C T T C T T G G A A T C A A C T A T A T G T T A A 50 100 150 200 250 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 63..87
Relationships
The following mRNA feature(s) are a part of this gene: