CmUC02G034530 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G034530
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	high mobility group B protein 3-like
Location	CmU531Chr02: 10951725 .. 10953465 (-)
RNA-Seq Expression	CmUC02G034530
Synteny	CmUC02G034530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCACTCTCCCTTTCCTTCTCTGCTCGTTCTCTCCTAATTCTAGACAACCACCATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAGCCTAACACACAGTAATCTTCTTCTTCACGCTGATTTTGAGCTTCTTGCTTTCGCTTTTCATCTTCAATTAGTTCTTACATTCTTTTGTTTCGATTTTCGATCTAAGTTTTTACTTTCTGTTATATCTTTTCGTTTGTAATGCTTCGCCTCTTTGTTCGTTCCTAATCGAGTTGAATTTTACAGCCTGCGTTGTCTGATTCTCATCAGTTTTTTTCTTATTAGTTTTTATTCCTATTACGCAAGGTTTATTCATTTCACTGATTACCTGAACTATTCTACTGGCATTATTTCTGTATTCTGTGTTTTAACTGTTCTATTTTCCATACGTTTTTGGCTGTAACACTAAATTGAATATACTCCTAAAGACTTTATCCAATTCTCCTTTCCTTTTTTTCTTTTTTTTTTTTTATCGTCGATCCGCATTCCGTAGGATGCTGAAGCAGAGAAAAACTGAGATGAAATCCTCAAAAAGCAACAAAGCCACGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCCACAGCCTTCTTCGTTTTCATGTAAGTATAATTTATAATTGAGGCTGCTCCGTTTTGAAAACCGTTCTTACATTCTAGTTTTCATTAGATTTGTCCATTCTCTGGTTTCGGTTTCTTGTTTTGGAAATGATAGGGAGGAATTCAGAAAAACGTTCAAGGAGATGTTTCCTGATGCAAAAGCTGGTCCAGTGGTGAGATCTTATACTGTTTTGATCAGCATTACTTTCTTTTTATTGCTCGAATCAGAAGACTTCTCGAGTTAGCTGGATTTGTTGTCTGCATTAAACTGCGTTCTGTTAATTTGCAGGTCGGAAAAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGATGCTGTAAGACTACGTTCTTATTTTCGTACTATTTCTATAGAAAATTAATTCGAGACTAAATAAATATCAGTGAGTGACCTTAACAATAAATGATTAAGGAATAAGCTGGTACTTGTGTTTCTTCCTCAGGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAGAAGGAAGGCAGAGTATGAGATAGCTCTTGAAGCATACAAGAAAAATCTCGTAATTAACTTGTTCCCACTCTATCTCTTCTTTTACCCCTTCGGCTTCACTTTGTCTGAACATCACCATGGTTTCATTATCTCCTGATTTACAGAATTTCTGTGCGGGCGCTGAAGCTGAAAATGAAATGCCAACAGAATCACAGGTTTCAACCTCTGAAGTCCATGATGACGAAGAGCAGGAAGCTAGCTCTAGCGCTTAGGTATTGTTTCCCTATCAGATCATGAGGATTATCCTCCTCCAGTATTTCTTTTAGTTAAACTGTAGATGGAGTACGGCCAGCTGATATTTGTTTTTTCTATATCGTCTGCCATGATTTTTGCAGGACTTCAGTGTCCCTTAGAGGTAACAGATTTTAATATCTTTTTAAATAAAAGTTTCTTGGTTATGTGGATGAAATCTAGCAAGTGCAGAGGGAGTCGAGAGGAAGCTAGAATTTGCATAAACTCTTTAACAACTTTAGGACAAAATATTTCTTTCGATCATATGTATATTCTATGTACTGCTCTGGTGGTGAACTCAATTCTCTTGAGATTATTCTCTGGTTAACAAATGTTGCATGTTTTGAATTC

mRNA sequence

CGTCACTCTCCCTTTCCTTCTCTGCTCGTTCTCTCCTAATTCTAGACAACCACCATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAGCCTAACACACAGATGCTGAAGCAGAGAAAAACTGAGATGAAATCCTCAAAAAGCAACAAAGCCACGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCCACAGCCTTCTTCGTTTTCATGGAGGAATTCAGAAAAACGTTCAAGGAGATGTTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGAAAAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAGAAGGAAGGCAGAGTATGAGATAGCTCTTGAAGCATACAAGAAAAATCTCAATTTCTGTGCGGGCGCTGAAGCTGAAAATGAAATGCCAACAGAATCACAGGTTTCAACCTCTGAAGTCCATGATGACGAAGAGCAGGAAGCTAGCTCTAGCGCTTAGGACTTCAGTGTCCCTTAGAGGTAACAGATTTTAATATCTTTTTAAATAAAAGTTTCTTGGTTATGTGGATGAAATCTAGCAAGTGCAGAGGGAGTCGAGAGGAAGCTAGAATTTGCATAAACTCTTTAACAACTTTAGGACAAAATATTTCTTTCGATCATATGTATATTCTATGTACTGCTCTGGTGGTGAACTCAATTCTCTTGAGATTATTCTCTGGTTAACAAATGTTGCATGTTTTGAATTC

Coding sequence (CDS)

ATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAGCCTAACACACAGATGCTGAAGCAGAGAAAAACTGAGATGAAATCCTCAAAAAGCAACAAAGCCACGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCCACAGCCTTCTTCGTTTTCATGGAGGAATTCAGAAAAACGTTCAAGGAGATGTTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGAAAAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAGAAGGAAGGCAGAGTATGAGATAGCTCTTGAAGCATACAAGAAAAATCTCAATTTCTGTGCGGGCGCTGAAGCTGAAAATGAAATGCCAACAGAATCACAGGTTTCAACCTCTGAAGTCCATGATGACGAAGAGCAGGAAGCTAGCTCTAGCGCTTAG

Protein sequence

MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPTESQVSTSEVHDDEEQEASSSA

Homology

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BLAST of CmUC02G034530 vs. NCBI nr
Match: XP_038902242.1 (high mobility group B protein 1-like [Benincasa hispida])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 134/149 (89.93%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRALR+AVV+ KK N QMLKQRKTEMKS+KS KATKKDQNAPKRPATAFFVFMEEFRKTF
Sbjct: 1   MRALRSAVVSRKKLNAQMLKQRKTEMKSTKSKKATKKDQNAPKRPATAFFVFMEEFRKTF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGA 120
           KE FPDAKAGPVVGKAGGEKWKSMSD EKAPYAEKALRRKAEYEIALEAYKKNLN CA A
Sbjct: 61  KEEFPDAKAGPVVGKAGGEKWKSMSDTEKAPYAEKALRRKAEYEIALEAYKKNLNCCADA 120

Query: 121 EAENEMPTESQVSTSEVHDDEEQEASSSA 150
           EAE EMPTESQ STSEVHDD EQEASSS+
Sbjct: 121 EAEIEMPTESQKSTSEVHDDAEQEASSSS 149

[Close]

BLAST of CmUC02G034530 vs. NCBI nr
Match: XP_023533147.1 (high mobility group B protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-56
Identity = 125/149 (83.89%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRAL+NAVVTHKKPN +MLK+RK EMKS+KSNKA KKDQNAPKRPATAFF+FMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNVEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGA 120
           KE FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YKK LN  A A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EAENEMPTESQVSTSEVHDDEEQEASSSA 150
           EAE EM TESQ STS+V DD EQEASSS+
Sbjct: 121 EAEVEMSTESQKSTSDVRDDAEQEASSSS 149

[Close]

BLAST of CmUC02G034530 vs. NCBI nr
Match: XP_022947100.1 (high mobility group B protein 3-like [Cucurbita moschata])

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-56
Identity = 125/149 (83.89%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRAL+NAVVTHKKPN +MLK+RK EMKS+KSNKA KKDQNAPKRPATAFF+FMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGA 120
           KE FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YKK LN  A A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EAENEMPTESQVSTSEVHDDEEQEASSSA 150
           EAE EM TESQ STS+V DD EQEASSS+
Sbjct: 121 EAEVEMSTESQKSTSDVRDDGEQEASSSS 149

[Close]

BLAST of CmUC02G034530 vs. NCBI nr
Match: XP_022971125.1 (high mobility group B protein 3-like [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 123/149 (82.55%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRAL+NAVVTHKKPN +MLK+RK EMKS+KSNKA KKDQNAPKRPATAFF+FMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGA 120
           KE FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YKK LN    A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAA 120

Query: 121 EAENEMPTESQVSTSEVHDDEEQEASSSA 150
           EAE E+ TESQ STS+V DD EQEASSS+
Sbjct: 121 EAEVELSTESQKSTSDVRDDAEQEASSSS 149

[Close]

BLAST of CmUC02G034530 vs. NCBI nr
Match: KAG7034971.1 (High mobility group B protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.2 bits (570), Expect = 7.6e-55
Identity = 125/151 (82.78%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRAL+NAVVTHKKPN +MLK+RK EMKS+KSNKA KKDQNAPKRPATAFF+FMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNL--NFCA 120
           KE FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YKK L  N  A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVTNCSA 120

Query: 121 GAEAENEMPTESQVSTSEVHDDEEQEASSSA 150
            AEAE EM TESQ STS+V DD EQEASSS+
Sbjct: 121 AAEAEVEMSTESQKSTSDVRDDGEQEASSSS 151

[Close]

BLAST of CmUC02G034530 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.0e-23
Identity = 65/134 (48.51%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 9   VTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAK 68
           V  +K   +     K   + ++  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ K
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPT 128
           A   VGKAGG+KWKSMS AEKAPY EKA +RKAEYE  ++AY KNL          E   
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL---------EEGSD 139

Query: 129 ESQVSTSEVHDDEE 143
           ES+ S SE++D++E
Sbjct: 140 ESEKSRSEINDEDE 144

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BLAST of CmUC02G034530 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.8e-22
Identity = 65/125 (52.00%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 23  KTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAKAGPVVGKAGGEKWK 82
           K +   +K  K   KD N PKRP +AFFVFME+FRKT+KE  P+ K+  VVGKAGG+KWK
Sbjct: 17  KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWK 76

Query: 83  SMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPTESQVSTSEVHDDEE 142
            ++ AEKAP+  KA +RK EYE  L+AY K     A   AE E   ES  S SEV+DD+E
Sbjct: 77  QLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQ---AAGAAEEE---ESDKSRSEVNDDDE 135

Query: 143 QEASS 148
            +  S
Sbjct: 137 DQDGS 135

[Close]

BLAST of CmUC02G034530 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-21
Identity = 67/135 (49.63%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 13  KPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAKAGPV 72
           K  T+  K   T+ K +K  K   KD N PKRP++AFFVFME+FR T+KE  P  K+   
Sbjct: 7   KAETRSTKLSVTK-KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAA 66

Query: 73  VGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPTESQV 132
           VGKAGGEKWKS+SD+EKAPY  KA +RK EYE  ++AY K L      E   +   ES  
Sbjct: 67  VGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDK 126

Query: 133 STSEVHDDEEQEASS 148
           S SEV+D+++ E  S
Sbjct: 127 SVSEVNDEDDAEDGS 134

[Close]

BLAST of CmUC02G034530 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-21
Identity = 64/129 (49.61%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 19  LKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAKAGPVVGKAGG 78
           L   K   K +   KA  KD N PKRPA+AFFVFME+FR+TFK+  P  K+   VGKA G
Sbjct: 15  LSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAG 74

Query: 79  EKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPTESQVSTSEVH 138
           +KWKS+SD+EKAPY  KA +RK EYE  ++AY K L      E   +   ES  S SEV+
Sbjct: 75  DKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVN 134

Query: 139 DDEEQEASS 148
           D+++ E  S
Sbjct: 135 DEDDAEDGS 137

[Close]

BLAST of CmUC02G034530 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-19
Identity = 62/129 (48.06%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 20  KQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAKAGPVVGKAGGE 79
           K   T+ +         KD N PKRP +AFFVFMEEFRK F +  P+ KA   VGKA G 
Sbjct: 22  KGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGA 81

Query: 80  KWKSMSDAEKAPYAEKALRRKAEYEIALEAY-KKNLNFCAGAEAENEMPTESQVSTSEVH 139
           KWK+MSDAEKAPY  K+ +RK EYE  + AY KK      G + E     ES+ S SEV+
Sbjct: 82  KWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEE-----ESEKSVSEVN 141

Query: 140 DDEEQEASS 148
           D+++ E  S
Sbjct: 142 DEDDDEEGS 145

[Close]

BLAST of CmUC02G034530 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 125/149 (83.89%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRAL+NAVVTHKKPN +MLK+RK EMKS+KSNKA KKDQNAPKRPATAFF+FMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGA 120
           KE FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YKK LN  A A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EAENEMPTESQVSTSEVHDDEEQEASSSA 150
           EAE EM TESQ STS+V DD EQEASSS+
Sbjct: 121 EAEVEMSTESQKSTSDVRDDGEQEASSSS 149

[Close]

BLAST of CmUC02G034530 vs. ExPASy TrEMBL
Match: A0A6J1I4V5 (high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.7e-56
Identity = 123/149 (82.55%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRAL+NAVVTHKKPN +MLK+RK EMKS+KSNKA KKDQNAPKRPATAFF+FMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGA 120
           KE FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RKAEYEIALE YKK LN    A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAA 120

Query: 121 EAENEMPTESQVSTSEVHDDEEQEASSSA 150
           EAE E+ TESQ STS+V DD EQEASSS+
Sbjct: 121 EAEVELSTESQKSTSDVRDDAEQEASSSS 149

[Close]

BLAST of CmUC02G034530 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 122/149 (81.88%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRA RNAV+  KKPN +MLKQRK EMKS+KSNK+ KKDQNAPKRPATAFF+FMEEFRKTF
Sbjct: 1   MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGA 120
           KE FPDAKAGP VGKAGGEKWKS+SDAEKAPYAEKAL RK EY IALEAYKK LN CA A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADA 120

Query: 121 EAENEMPTESQVSTSEVHDDEEQEASSSA 150
           EA   MPTESQ STSEVHDD +QEASSS+
Sbjct: 121 EA--AMPTESQKSTSEVHDDVDQEASSSS 147

[Close]

BLAST of CmUC02G034530 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 125/149 (83.89%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRALRNAVVTHKKPN Q LKQRK EMKS+KS    KKDQNAPKRPATAFFVFMEEFR  F
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGA 120
           KE FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKAL+RKAEYEIALEAYK N N    A
Sbjct: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120

Query: 121 EAENEMPTESQVSTSEVHDDEEQEASSSA 150
           E E EMPTESQ STSEV+DD EQEASSS+
Sbjct: 121 EPELEMPTESQKSTSEVNDDTEQEASSSS 146

[Close]

BLAST of CmUC02G034530 vs. ExPASy TrEMBL
Match: A0A1S3C1W5 (HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 5.0e-52
Identity = 125/157 (79.62%), Postives = 129/157 (82.17%), Query Frame = 0


Query: 1   MRALRNAVVTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTF 60
           MRALRNAVVTHKKPN Q LKQRK EMKS+KS    KKDQNAPKRPATAFFVFMEEFR  F
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMF 60

Query: 61  KEMFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEKALRRKAEYEIALEAYKK 120
           KE FPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAEKAL+RKAEYEIALEAYK 
Sbjct: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKN 120

Query: 121 NLNFCAGAEAENEMPTESQVSTSEVHDDEEQEASSSA 150
           N N    AE E EMPTESQ STSEV+DD EQEASSS+
Sbjct: 121 NFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 154

[Close]

BLAST of CmUC02G034530 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 65/134 (48.51%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 9   VTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAK 68
           V  +K   +     K   + ++  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ K
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPT 128
           A   VGKAGG+KWKSMS AEKAPY EKA +RKAEYE  ++AY KNL          E   
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL---------EEGSD 139

Query: 129 ESQVSTSEVHDDEE 143
           ES+ S SE++D++E
Sbjct: 140 ESEKSRSEINDEDE 144

[Close]

BLAST of CmUC02G034530 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 65/134 (48.51%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 9   VTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAK 68
           V  +K   +     K   + ++  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ K
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPT 128
           A   VGKAGG+KWKSMS AEKAPY EKA +RKAEYE  ++AY KNL          E   
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL---------EEGSD 139

Query: 129 ESQVSTSEVHDDEE 143
           ES+ S SE++D++E
Sbjct: 140 ESEKSRSEINDEDE 144

[Close]

BLAST of CmUC02G034530 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 65/134 (48.51%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 9   VTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAK 68
           V  +K   +     K   + ++  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ K
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPT 128
           A   VGKAGG+KWKSMS AEKAPY EKA +RKAEYE  ++AY KNL          E   
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL---------EEGSD 139

Query: 129 ESQVSTSEVHDDEE 143
           ES+ S SE++D++E
Sbjct: 140 ESEKSRSEINDEDE 144

[Close]

BLAST of CmUC02G034530 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 65/134 (48.51%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 9   VTHKKPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAK 68
           V  +K   +     K   + ++  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ K
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGPVVGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPT 128
           A   VGKAGG+KWKSMS AEKAPY EKA +RKAEYE  ++AY KNL          E   
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL---------EEGSD 139

Query: 129 ESQVSTSEVHDDEE 143
           ES+ S SE++D++E
Sbjct: 140 ESEKSRSEINDEDE 144

[Close]

BLAST of CmUC02G034530 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 102.1 bits (253), Expect = 4.1e-22
Identity = 67/135 (49.63%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 13  KPNTQMLKQRKTEMKSSKSNKATKKDQNAPKRPATAFFVFMEEFRKTFKEMFPDAKAGPV 72
           K  T+  K   T+ K +K  K   KD N PKRP++AFFVFME+FR T+KE  P  K+   
Sbjct: 7   KAETRSTKLSVTK-KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAA 66

Query: 73  VGKAGGEKWKSMSDAEKAPYAEKALRRKAEYEIALEAYKKNLNFCAGAEAENEMPTESQV 132
           VGKAGGEKWKS+SD+EKAPY  KA +RK EYE  ++AY K L      E   +   ES  
Sbjct: 67  VGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDK 126

Query: 133 STSEVHDDEEQEASS 148
           S SEV+D+++ E  S
Sbjct: 127 SVSEVNDEDDAEDGS 134

The following BLAST results are available for this feature:

BLAST of CmUC02G034530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902242.1	1.2e-60	89.93	high mobility group B protein 1-like [Benincasa hispida]	[more]
XP_023533147.1	1.8e-56	83.89	high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947100.1	2.4e-56	83.89	high mobility group B protein 3-like [Cucurbita moschata]	[more]
XP_022971125.1	1.2e-55	82.55	high mobility group B protein 3-like [Cucurbita maxima]	[more]
KAG7034971.1	7.6e-55	82.78	High mobility group B protein 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmUC02G034530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	8.0e-23	48.51	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P40619	8.8e-22	52.00	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P93047	5.7e-21	49.63	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	9.8e-21	49.61	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P26585	2.4e-19	48.06	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of CmUC02G034530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5W3	1.1e-56	83.89	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1I4V5	5.7e-56	82.55	high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891...	[more]
A0A6J1CIL2	1.1e-54	81.88	high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3C2L9	3.1e-54	83.89	high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C1W5	5.0e-52	79.62	HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1	[more]

BLAST of CmUC02G034530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.1	5.7e-24	48.51	high mobility group B1	[more]
AT3G51880.2	5.7e-24	48.51	high mobility group B1	[more]
AT3G51880.3	5.7e-24	48.51	high mobility group B1	[more]
AT3G51880.4	5.7e-24	48.51	high mobility group B1	[more]
AT1G20696.1	4.1e-22	49.63	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..149
None	No IPR available	PANTHER	PTHR46261:SF10	HIGH MOBILITY GROUP B PROTEIN 3-LIKE	coord: 1..147
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 42..108 e-value: 4.60316E-15 score: 63.4157
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 41..112 e-value: 1.4E-21 score: 87.7
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 42..111 e-value: 4.9E-19 score: 68.5
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 42..111 score: 17.941784
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 25..120 e-value: 1.2E-23 score: 85.2
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 27..113
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G034530.1	CmUC02G034530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin