CmUC02G033520 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G033520
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr02: 8467975 .. 8468214 (-)
RNA-Seq Expression	CmUC02G033520
Synteny	CmUC02G033520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAAGATCAGAAGCTTTTGCTTAGCTTTTATTATGATTCTAATGACTATCCCAAACTTTGCCAATTTTGCCGATTGTCGACTGCTCCGATCGGAGGCCGAGAGCAACGGGGTTAAGGAACATGATGTTCACGAAAAGTCAAAAACCCTAACACCGCACCTGAAAGGTTCCAGCAGTAGAGTCGACCGAGTCTTCACGTTGGCTTCGGGACCGAGCAGGAAGGGCGCCGGCCATTAG

mRNA sequence

ATGTTCAAGATCAGAAGCTTTTGCTTAGCTTTTATTATGATTCTAATGACTATCCCAAACTTTGCCAATTTTGCCGATTGTCGACTGCTCCGATCGGAGGCCGAGAGCAACGGGGTTAAGGAACATGATGTTCACGAAAAGTCAAAAACCCTAACACCGCACCTGAAAGGTTCCAGCAGTAGAGTCGACCGAGTCTTCACGTTGGCTTCGGGACCGAGCAGGAAGGGCGCCGGCCATTAG

Coding sequence (CDS)

ATGTTCAAGATCAGAAGCTTTTGCTTAGCTTTTATTATGATTCTAATGACTATCCCAAACTTTGCCAATTTTGCCGATTGTCGACTGCTCCGATCGGAGGCCGAGAGCAACGGGGTTAAGGAACATGATGTTCACGAAAAGTCAAAAACCCTAACACCGCACCTGAAAGGTTCCAGCAGTAGAGTCGACCGAGTCTTCACGTTGGCTTCGGGACCGAGCAGGAAGGGCGCCGGCCATTAG

Protein sequence

MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSSRVDRVFTLASGPSRKGAGH

Homology

[Close]

BLAST of CmUC02G033520 vs. NCBI nr
Match: KAE8652345.1 (hypothetical protein Csa_022541, partial [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 8.0e-19
Identity = 58/80 (72.50%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDV-HEKSKTLTPHLKGSS 60
           MFK+RSF +A IMILM IPNFA FA+ R+LRSEAE   VKEHDV  EK K LTP  K SS
Sbjct: 21  MFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVKEHDVDQEKPKRLTPQPKDSS 80

Query: 61  SRVDRVFTLASGPSRKGAGH 80
           S  DRVFTLASGPSRKG GH
Sbjct: 81  SSGDRVFTLASGPSRKGGGH 100

[Close]

BLAST of CmUC02G033520 vs. NCBI nr
Match: KAA0043050.1 (uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-18
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSS 60
          MFK+RS  +A IMILM IPNFA FA+ R+LRSEAE +GVKEHDV EK K L P  K SSS
Sbjct: 1  MFKVRSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 RVDRVFTLASGPSRKGAGH 80
            +RV TLASGPSRKG GH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of CmUC02G033520 vs. NCBI nr
Match: TYK01636.1 (uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSS 60
          MFK+ S  +A IMILM IPNFA FA+ R+LRSEAE +GVKEHDV EK K L P  K SSS
Sbjct: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 RVDRVFTLASGPSRKGAGH 80
            +RV TLASGPSRKG GH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of CmUC02G033520 vs. ExPASy TrEMBL
Match: A0A5A7TI98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001340 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.6e-19
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSS 60
          MFK+RS  +A IMILM IPNFA FA+ R+LRSEAE +GVKEHDV EK K L P  K SSS
Sbjct: 1  MFKVRSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 RVDRVFTLASGPSRKGAGH 80
            +RV TLASGPSRKG GH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of CmUC02G033520 vs. ExPASy TrEMBL
Match: A0A5D3BTU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38G00040 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.6e-18
Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSS 60
          MFK+ S  +A IMILM IPNFA FA+ R+LRSEAE +GVKEHDV EK K L P  K SSS
Sbjct: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 RVDRVFTLASGPSRKGAGH 80
            +RV TLASGPSRKG GH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

The following BLAST results are available for this feature:

BLAST of CmUC02G033520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652345.1	8.0e-19	72.50	hypothetical protein Csa_022541, partial [Cucumis sativus]	[more]
KAA0043050.1	1.8e-18	69.62	uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa]	[more]
TYK01636.1	1.2e-17	68.35	uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa]	[more]

BLAST of CmUC02G033520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G033520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TI98	8.6e-19	69.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BTU1	5.6e-18	68.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmUC02G033520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G033520.1	CmUC02G033520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane