CmUC02G032580 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G032580
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Gag protease polyprotein
Location	CmU531Chr02: 6878533 .. 6879724 (+)
RNA-Seq Expression	CmUC02G032580
Synteny	CmUC02G032580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCGAATGACAAGAAGAATCATTGAGGCGATATGGGACTTGCATGGTTTTTGCATAGTTTTGAATGTACATGGTCTTCTTATTTACGTAGCTAGGTTGTCTCTTGGGCTAAACTTGAGTCTATGCGTTTATTTTAGTATTGCATTTATTCATTGTTTTTATGAATATATTTCAAACATTCTCAAAATAATGTGTTCTTAGGGGTACCTCCAAACACTTTTGCCTATCATTTATTATTGAGCCCACGTTTTGTAATAAAGGTCTAAGTGTTGCACATAATTCTGTGTTTCTTTCCTCATCTGTTGTTGCATGGTGTCATTTTGGTCAAGCATGCATCAAGTAATGATCTGGTTAGGGGTTTGTCTAGGTGGGTTGTTACAGTTGGTATTAGAGCCCAGAGTTTTAGGTTCTATAGATTGACTTACTATGTAAGTCTAGATTGTCCCTATAGCCACTAAAAGATTCTTCGTCATTGCCAAGTATGCATTCCAAGTATATTTCTTTAGAGTGTTCTGCTTGAAAACTTGCTAGTTTTTCCCTTACATTACTATTTTGACATAACATCCTTAGTAAGGAAATTTATGGTGGTTGTTGTATGCAATTTTAGGAGATGGCTTGTGGAGGTAGAAGAAGAGGCAGGGGTAGGGAAAGAGGGTTACCAAACCCTCAAGTTCAGGACCCCGTGGAGTAGAACCCTCAGCTCCAGGACCCTCCCGCTCCGCGAGGACCCCCACTGCCACAGGCTTCTGTTGGGTCAATGGAGCAGGGAACCAGGGCAAGGGGGCGAACCTGTAATGCGCCCGAGCCACCACAGATGCAGGCTCCACAAGGGGCCTAAACCTATTTCGCGACAATGGCTGCACAGATAGGGGAAACTGTTACTGACACCCTAATGGACAAAACTCAAGAGGTAACCCGTGTAGCTGTGGCAGGACAATTAGCACAGCAGATCCCGACTCCCCAAGTGCCAGAGCAACAAATTCCGCCTTATCATGACTTGTTTGCTGAAGCGAAGTATTTGCGAGACTTTAGGAAATATAACCCCCGCACCTTTGACGGATTGTTGAAGGACCCTACCAAGGCGAAAATGTGGCTATTTTCCATTGAGACTATTTTTCGCTACATGAAATGTTCGGAGGACCAAAAACTTCAGTGTGCAGTGTTCGTGTTGACTGATGATGCAAAAATCTAG

mRNA sequence

CGGCGAATGACAAGAAGAATCATTGAGGCGATATGGGACTTGCATGGTTTTTGCATAGTTTTGAATGAGATGGCTTGTGGAGGTAGAAGAAGAGGCAGGGGTAGGGAAAGAGGGTTACCAAACCCTCAAGTTCAGGACCCCGTGGAGTAGAACCCTCAGCTCCAGGACCCTCCCGCTCCGCGAGGACCCCCACTGCCACAGGCTTCTGTTGGGTCAATGGAGCAGGGAACCAGGGCAAGGGGGCGAACCTGTAATGCGCCCGAGCCACCACAGATGCAGGCTCCACAAGGGGCCTAAACCTATTTCGCGACAATGGCTGCACAGATAGGGGAAACTGTTACTGACACCCTAATGGACAAAACTCAAGAGGTAACCCGTGTAGCTGTGGCAGGACAATTAGCACAGCAGATCCCGACTCCCCAAGTGCCAGAGCAACAAATTCCGCCTTATCATGACTTGTTTGCTGAAGCGAAGTATTTGCGAGACTTTAGGAAATATAACCCCCGCACCTTTGACGGATTGTTGAAGGACCCTACCAAGGCGAAAATGTGGCTATTTTCCATTGAGACTATTTTTCGCTACATGAAATGTTCGGAGGACCAAAAACTTCAGTGTGCAGTGTTCGTGTTGACTGATGATGCAAAAATCTAG

Coding sequence (CDS)

ATGGCTGCACAGATAGGGGAAACTGTTACTGACACCCTAATGGACAAAACTCAAGAGGTAACCCGTGTAGCTGTGGCAGGACAATTAGCACAGCAGATCCCGACTCCCCAAGTGCCAGAGCAACAAATTCCGCCTTATCATGACTTGTTTGCTGAAGCGAAGTATTTGCGAGACTTTAGGAAATATAACCCCCGCACCTTTGACGGATTGTTGAAGGACCCTACCAAGGCGAAAATGTGGCTATTTTCCATTGAGACTATTTTTCGCTACATGAAATGTTCGGAGGACCAAAAACTTCAGTGTGCAGTGTTCGTGTTGACTGATGATGCAAAAATCTAG

Protein sequence

MAAQIGETVTDTLMDKTQEVTRVAVAGQLAQQIPTPQVPEQQIPPYHDLFAEAKYLRDFRKYNPRTFDGLLKDPTKAKMWLFSIETIFRYMKCSEDQKLQCAVFVLTDDAKI

Homology

[Close]

BLAST of CmUC02G032580 vs. NCBI nr
Match: XP_038883046.1 (uncharacterized protein LOC120074107 [Benincasa hispida] >XP_038883047.1 uncharacterized protein LOC120074107 [Benincasa hispida] >XP_038883048.1 uncharacterized protein LOC120074107 [Benincasa hispida] >XP_038883049.1 uncharacterized protein LOC120074107 [Benincasa hispida] >XP_038883050.1 uncharacterized protein LOC120074107 [Benincasa hispida] >XP_038883051.1 uncharacterized protein LOC120074107 [Benincasa hispida] >XP_038883052.1 uncharacterized protein LOC120074107 [Benincasa hispida] >XP_038883053.1 uncharacterized protein LOC120074107 [Benincasa hispida] >XP_038883054.1 uncharacterized protein LOC120074107 [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 64/120 (53.33%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 1   MAAQIGETVTDTLMDKTQEVTRVAVAGQL----AQQIPTPQVPEQQIPPYH----DLFAE 60
           M A+I E V  +LM K QE+ R A+  Q     AQ+ P P    QQ  P +     L  E
Sbjct: 9   MEARISEVVASSLMGKLQELIRSAMVEQTAQTQAQEEPMPLEQLQQTRPQNRDMQGLSLE 68

Query: 61  AKYLRDFRKYNPRTFDGLLKDPTKAKMWLFSIETIFRYMKCSEDQKLQCAVFVLTDDAKI 113
           AK+LRDFRKY+PR+FDG L DPTKAKMWL SIETIFR+M+C E+ KLQC VF+L  + +I
Sbjct: 69  AKHLRDFRKYDPRSFDGSLGDPTKAKMWLSSIETIFRFMRCPEEHKLQCTVFMLIGNVEI 128

[Close]

BLAST of CmUC02G032580 vs. NCBI nr
Match: KAA0046048.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-21
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 3   AQIGETVTDTLMDKTQEVTRVAVAGQLAQQIPTPQVPEQQIPPYHDLFAEAKYLRDFRKY 62
           A + +   D +M K ++  + A         P P VP  Q+ P   L AEAK+LRDFRKY
Sbjct: 45  AAMEQRFRDLIMQKREQQQQPAPPAPAPAPAPVPVVP--QVVP-DQLSAEAKHLRDFRKY 104

Query: 63  NPRTFDGLLKDPTKAKMWLFSIETIFRYMKCSEDQKLQCAVFVLTD 109
           NP TFDG L+DPT+A++WL S+ETIFRYMKC EDQK+QCAVF+LTD
Sbjct: 105 NPTTFDGSLEDPTRAQLWLSSLETIFRYMKCPEDQKVQCAVFMLTD 147

[Close]

BLAST of CmUC02G032580 vs. NCBI nr
Match: KAA0047534.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 5.4e-21
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 34  PTPQVPEQQIPPYHDLFAEAKYLRDFRKYNPRTFDGLLKDPTKAKMWLFSIETIFRYMKC 93
           P P VP+Q       L AEAK+LRDFRKYNP TFDG LKDPT+A++WL S+ETIFRYMKC
Sbjct: 214 PVPVVPDQ-------LSAEAKHLRDFRKYNPTTFDGSLKDPTRAQLWLSSLETIFRYMKC 273

Query: 94  SEDQKLQCAVFVLTD 109
            EDQK+QCAVF+LTD
Sbjct: 274 PEDQKVQCAVFMLTD 281

[Close]

BLAST of CmUC02G032580 vs. NCBI nr
Match: TYK06288.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 5.4e-21
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 34  PTPQVPEQQIPPYHDLFAEAKYLRDFRKYNPRTFDGLLKDPTKAKMWLFSIETIFRYMKC 93
           P P VP+Q       L AEAK+LRDFRKYNP TFDG LKDPT+A++WL S+ETIFRYMKC
Sbjct: 75  PVPVVPDQ-------LSAEAKHLRDFRKYNPTTFDGSLKDPTRAQLWLSSLETIFRYMKC 134

Query: 94  SEDQKLQCAVFVLTD 109
            EDQK+QCAVF+LTD
Sbjct: 135 PEDQKVQCAVFMLTD 142

[Close]

BLAST of CmUC02G032580 vs. NCBI nr
Match: TYK01089.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 5.4e-21
Identity = 61/111 (54.95%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 2   AAQIGETVTDTLMDKTQEVTRVAVAGQLAQQIPTPQVPEQQ--IPPY--HDLFAEAKYLR 61
           A  +   VT   +   ++  R  +     QQ PTP  P     +P      L  EAK+LR
Sbjct: 333 ATDLAAPVTHADLAAMEQRFRDLIMQMGEQQQPTPPAPAPAPVVPQVVSDQLSTEAKHLR 392

Query: 62  DFRKYNPRTFDGLLKDPTKAKMWLFSIETIFRYMKCSEDQKLQCAVFVLTD 109
           DFRKYNP TFDG LKDPTKA+MWL S+ETIFRYMKCSEDQK+QCAVF+LTD
Sbjct: 393 DFRKYNPTTFDGSLKDPTKAQMWLSSLETIFRYMKCSEDQKVQCAVFMLTD 443

[Close]

BLAST of CmUC02G032580 vs. ExPASy TrEMBL
Match: A0A5A7TT51 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G006220 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 3   AQIGETVTDTLMDKTQEVTRVAVAGQLAQQIPTPQVPEQQIPPYHDLFAEAKYLRDFRKY 62
           A + +   D +M K ++  + A         P P VP  Q+ P   L AEAK+LRDFRKY
Sbjct: 45  AAMEQRFRDLIMQKREQQQQPAPPAPAPAPAPVPVVP--QVVP-DQLSAEAKHLRDFRKY 104

Query: 63  NPRTFDGLLKDPTKAKMWLFSIETIFRYMKCSEDQKLQCAVFVLTD 109
           NP TFDG L+DPT+A++WL S+ETIFRYMKC EDQK+QCAVF+LTD
Sbjct: 105 NPTTFDGSLEDPTRAQLWLSSLETIFRYMKCPEDQKVQCAVFMLTD 147

[Close]

BLAST of CmUC02G032580 vs. ExPASy TrEMBL
Match: A0A5D3C572 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00730 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 34  PTPQVPEQQIPPYHDLFAEAKYLRDFRKYNPRTFDGLLKDPTKAKMWLFSIETIFRYMKC 93
           P P VP+Q       L AEAK+LRDFRKYNP TFDG LKDPT+A++WL S+ETIFRYMKC
Sbjct: 75  PVPVVPDQ-------LSAEAKHLRDFRKYNPTTFDGSLKDPTRAQLWLSSLETIFRYMKC 134

Query: 94  SEDQKLQCAVFVLTD 109
            EDQK+QCAVF+LTD
Sbjct: 135 PEDQKVQCAVFMLTD 142

[Close]

BLAST of CmUC02G032580 vs. ExPASy TrEMBL
Match: A0A5D3BSM2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G001150 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 61/111 (54.95%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 2   AAQIGETVTDTLMDKTQEVTRVAVAGQLAQQIPTPQVPEQQ--IPPY--HDLFAEAKYLR 61
           A  +   VT   +   ++  R  +     QQ PTP  P     +P      L  EAK+LR
Sbjct: 333 ATDLAAPVTHADLAAMEQRFRDLIMQMGEQQQPTPPAPAPAPVVPQVVSDQLSTEAKHLR 392

Query: 62  DFRKYNPRTFDGLLKDPTKAKMWLFSIETIFRYMKCSEDQKLQCAVFVLTD 109
           DFRKYNP TFDG LKDPTKA+MWL S+ETIFRYMKCSEDQK+QCAVF+LTD
Sbjct: 393 DFRKYNPTTFDGSLKDPTKAQMWLSSLETIFRYMKCSEDQKVQCAVFMLTD 443

[Close]

BLAST of CmUC02G032580 vs. ExPASy TrEMBL
Match: A0A5A7TX58 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2963G00100 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 34  PTPQVPEQQIPPYHDLFAEAKYLRDFRKYNPRTFDGLLKDPTKAKMWLFSIETIFRYMKC 93
           P P VP+Q       L AEAK+LRDFRKYNP TFDG LKDPT+A++WL S+ETIFRYMKC
Sbjct: 214 PVPVVPDQ-------LSAEAKHLRDFRKYNPTTFDGSLKDPTRAQLWLSSLETIFRYMKC 273

Query: 94  SEDQKLQCAVFVLTD 109
            EDQK+QCAVF+LTD
Sbjct: 274 PEDQKVQCAVFMLTD 281

[Close]

BLAST of CmUC02G032580 vs. ExPASy TrEMBL
Match: A0A5A7V5X6 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2223G00010 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.4e-21
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 31  QQIPTPQVPEQQIPPYHDLFAEAKYLRDFRKYNPRTFDGLLKDPTKAKMWLFSIETIFRY 90
           QQ P    P  Q  P   L AEAK+LRDFRKYNP TFDG L+DPT+A+MWL S+ETIFRY
Sbjct: 15  QQKPASPTPAPQFVP-DQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRY 74

Query: 91  MKCSEDQKLQCAVFVLTD 109
           MKC EDQK+QCAVF+LTD
Sbjct: 75  MKCPEDQKVQCAVFMLTD 91

The following BLAST results are available for this feature:

BLAST of CmUC02G032580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883046.1	1.1e-21	53.33	uncharacterized protein LOC120074107 [Benincasa hispida] >XP_038883047.1 unchara...	[more]
KAA0046048.1	4.1e-21	54.72	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047534.1	5.4e-21	70.67	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYK06288.1	5.4e-21	70.67	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYK01089.1	5.4e-21	54.95	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CmUC02G032580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G032580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TT51	2.0e-21	54.72	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3C572	2.6e-21	70.67	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BSM2	2.6e-21	54.95	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5A7TX58	2.6e-21	70.67	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7V5X6	3.4e-21	69.23	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of CmUC02G032580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G032580.1	CmUC02G032580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016020	membrane
molecular_function	GO:0016746	acyltransferase activity
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008270	zinc ion binding