CmUC02G028270 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G028270
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	glycine-rich protein-like
Location	CmU531Chr02: 2341987 .. 2342515 (+)
RNA-Seq Expression	CmUC02G028270
Synteny	CmUC02G028270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCAGTGAGTTTCATTTCTTCACACTTTTATTGGCACAAAAATACATAAGTTTCGTCAAATATGTGAATTCCTAGTTTTTCAATAAGTTGACAGGCAATAAACATCGACAAAACTATTCGTTGATAATTTCTTTGGCTGTTAACAAATGTCTTTATTGACATTTTTTGGCCTTCAACAAAAGCAAAATTTGTAGTGGTGTATGTTAATTATATTATTGATGAACCTTTCGTAGATGAAGCTATGATGGAAAATGGAGAAGTTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCGTCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA

mRNA sequence

ATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCAATGAAGCTATGATGGAAAATGGAGAAGTTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCGTCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA

Coding sequence (CDS)

ATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCAATGAAGCTATGATGGAAAATGGAGAAGTTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCGTCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA

Protein sequence

MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN

Homology

[Close]

BLAST of CmUC02G028270 vs. NCBI nr
Match: XP_038888333.1 (glycine-rich protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 7.4e-38
Identity = 84/99 (84.85%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLA 60
           MSS+AFIFLGLLFAIVVLFSSEEVTV ARDVKF EAMME GEVDDVERH  GGGHARNLA
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKFEEAMMETGEVDDVERHGFGGGHARNLA 60

Query: 61  ECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN 100
           ECLHGC  GCC C RGRCIRCCS A EAVD +PQ KPNN
Sbjct: 61  ECLHGCNHGCCECFRGRCIRCCSFAGEAVDVKPQAKPNN 99

[Close]

BLAST of CmUC02G028270 vs. NCBI nr
Match: XP_038888334.1 (glycine-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 84/99 (84.85%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLA 60
           MSS+AFIFLGLLFAIVVLFSSEEVTV ARDVKF EAMME GEVDDVERH  GGGHARNLA
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKF-EAMMETGEVDDVERHGFGGGHARNLA 60

Query: 61  ECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN 100
           ECLHGC  GCC C RGRCIRCCS A EAVD +PQ KPNN
Sbjct: 61  ECLHGCNHGCCECFRGRCIRCCSFAGEAVDVKPQAKPNN 98

[Close]

BLAST of CmUC02G028270 vs. NCBI nr
Match: XP_004144531.1 (glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_020301 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLA 60
           MSS++FI LGLLFA VVLFSSE +TVTARD K  EA ME GEVD+VERH  GG H+RNLA
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60

Query: 61  ECLHGCARGCCGCVRGRCIRCCSSADEA--VDGEPQVKPNN 100
           ECLHGC RGCC C RGRCIRCCS A EA  VDG+PQ KPNN
Sbjct: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of CmUC02G028270 vs. NCBI nr
Match: KAE8645721.1 (hypothetical protein Csa_020383 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1  MSSRAFIFLGLLFAIVVLFSSEEVTVTA-RDVKFNEAMMENGEVDDVERHVIGGGHARNL 60
          M+S+AFI LGLLFA V+L   E   VTA  D+K NEA  +  E++DV+ H +GG  A +L
Sbjct: 1  MNSKAFILLGLLFAAVIL---EVTAVTATNDIKSNEAFKQTDEINDVKHHDLGGEDA-SL 60

Query: 61 AECLHGCARGCCGCVRGRCIRCC 83
          A+C H C +GCC C  G C++CC
Sbjct: 61 AQCHHHCHKGCCKCSHGHCVKCC 79

[Close]

BLAST of CmUC02G028270 vs. NCBI nr
Match: XP_038888674.1 (glycine-rich protein-like [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 51/97 (52.58%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME--NGEVDDVERHVIGGGHAR 60
          MSS+AFIFLG LF +VVL SSEEVT  A D+K   +AMME   G  +DV+R    G H  
Sbjct: 1  MSSKAFIFLGFLFVVVVLLSSEEVTAIADDLKSVEKAMMETNGGGFEDVKRRFRRGHHGH 60

Query: 61 NLAECLHGCARGCCGCVR-GRCIRCCSSADEAVDGEP 94
                  C  GCCG    G C RCCS A EAVD EP
Sbjct: 61 ------RHCHHGCCGHHHLGGCSRCCSFAGEAVDAEP 91

[Close]

BLAST of CmUC02G028270 vs. ExPASy TrEMBL
Match: A0A0A0K5A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.5e-32
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLA 60
           MSS++FI LGLLFA VVLFSSE +TVTARD K  EA ME GEVD+VERH  GG H+RNLA
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60

Query: 61  ECLHGCARGCCGCVRGRCIRCCSSADEA--VDGEPQVKPNN 100
           ECLHGC RGCC C RGRCIRCCS A EA  VDG+PQ KPNN
Sbjct: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of CmUC02G028270 vs. ExPASy TrEMBL
Match: A0A6J1JMI7 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME-NGEVDDVERHVIGGG---- 60
           M+S+AFI LGLLFA+V+L SSEE T TAR +K   EA+ME NG+  + ++   GGG    
Sbjct: 1   MNSKAFIILGLLFAVVILLSSEEATATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60

Query: 61  ---HARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN 100
              H  +   C HGC                 SADE V+ +PQ KPNN
Sbjct: 61  KHHHRHHHRHCRHGC-----------------SADEDVNEDPQAKPNN 91

[Close]

BLAST of CmUC02G028270 vs. ExPASy TrEMBL
Match: A0A6J1C3T3 (glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC111007996 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 54/129 (41.86%), Postives = 65/129 (50.39%), Query Frame = 0


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHV-------IGG 60
           M+S+AFI LGLLFA+VVL SS+   VTARD+K  E +ME   V+D +           GG
Sbjct: 1   MNSKAFILLGLLFAVVVLLSSD---VTARDLK-GETVMETDGVEDAKDRSYDRGHGHYGG 60

Query: 61  GHARNLAECLHG-----------------------CARGCCGCVRGRCIRCCSSADEAVD 100
           G+ R  +    G                       C  GCCG   G C RCCS A EAVD
Sbjct: 61  GYDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCG-YHGSCGRCCSYAGEAVD 120

[Close]

BLAST of CmUC02G028270 vs. ExPASy TrEMBL
Match: A0A6J1ESD5 (glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME-NGEVDDVERHVIGGG---- 60
           M+S+AFI LGLLF IV+L SSEE + TAR +K   EA+ME NG+  + ++   GGG    
Sbjct: 1   MNSKAFIILGLLFTIVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60

Query: 61  --HARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN 100
             H R+     H C  GC             SADE V+ +PQ KPNN
Sbjct: 61  RHHHRHHHRHRHHCRHGC-------------SADEDVNEDPQAKPNN 94

[Close]

BLAST of CmUC02G028270 vs. ExPASy TrEMBL
Match: A0A6J1C3E0 (glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 50/105 (47.62%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMM---ENGEVDDVERHVIGGGHAR 60
           MSS+  IFLGLLFA+VVL SSEEVT TARD+K  E +M    NG  DD   H     H R
Sbjct: 1   MSSKTLIFLGLLFAVVVLLSSEEVTATARDLKSVEEVMTETNNGIEDDKRGHHGHHHHHR 60

Query: 61  NLAECLHGCARGCCGCVRGRCIRCCSSA--DEAVD-GEPQVKPNN 100
               C H                 CS A  DEAVD  E Q KPNN
Sbjct: 61  RRRHCHH---------------HHCSFADEDEAVDEEEAQTKPNN 90

The following BLAST results are available for this feature:

BLAST of CmUC02G028270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888333.1	7.4e-38	84.85	glycine-rich protein-like isoform X1 [Benincasa hispida]	[more]
XP_038888334.1	1.8e-36	84.85	glycine-rich protein-like isoform X2 [Benincasa hispida]	[more]
XP_004144531.1	1.3e-31	75.25	glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_0203...	[more]
KAE8645721.1	1.7e-10	50.60	hypothetical protein Csa_020383 [Cucumis sativus]	[more]
XP_038888674.1	1.1e-09	52.58	glycine-rich protein-like [Benincasa hispida]	[more]

BLAST of CmUC02G028270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G028270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5A1	6.5e-32	75.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1	[more]
A0A6J1JMI7	1.7e-08	43.52	glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4...	[more]
A0A6J1C3T3	1.7e-08	41.86	glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1ESD5	1.1e-07	43.93	glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE...	[more]
A0A6J1C3E0	1.6e-06	47.62	glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 P...	[more]

BLAST of CmUC02G028270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G028270.1	CmUC02G028270.1	mRNA