CmUC02G026940 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC02G026940
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic
Location	CmU531Chr02: 1275152 .. 1275661 (-)
RNA-Seq Expression	CmUC02G026940
Synteny	CmUC02G026940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Protein sequence

MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Homology

[Close]

BLAST of CmUC02G026940 vs. NCBI nr
Match: XP_038887363.1 (photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 7.3e-78
Identity = 159/169 (94.08%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQTPF PLKPKSTISAAA+ T VRRRDFLSLTASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTVRRRDFLSLTASVLAPSWVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALA+SD+EYVKDTSEVIGKVR TITMDRNDPNVAAAVAELRE+SN WVAKYRKEKALLGR
Sbjct: 61  ALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of CmUC02G026940 vs. NCBI nr
Match: XP_008455335.1 (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo] >KAA0031585.1 photosystem II repair protein PSB27-H1 [Cucumis melo var. makuwa] >TYK07037.1 photosystem II repair protein PSB27-H1 [Cucumis melo var. makuwa])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of CmUC02G026940 vs. NCBI nr
Match: XP_004136817.1 (photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN43600.1 hypothetical protein Csa_020553 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 6.2e-77
Identity = 156/169 (92.31%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRR+FLSLTASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of CmUC02G026940 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 3.3e-70
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFP 60
           MASPTLITP TSKSQ    PLKPKS+ISAAA+TT     RRR+FLSLTASVLAPS VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKAL 120
            +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of CmUC02G026940 vs. NCBI nr
Match: KAG6572353.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011964.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.6 bits (701), Expect = 5.6e-70
Identity = 149/173 (86.13%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIV----RRRDFLSLTASVLAPSLVLF 60
           MASPTLITP TSKSQ    PLKPKS+I+AAA+TT      RRR+FLSLTASVLAPS VLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  PQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKA 120
           P +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]

BLAST of CmUC02G026940 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.6e-49
Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 38  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAA 97
           RRDFLSL  T+++L  S+     +P  AA DEEY+KDTS VI KVR+T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]

BLAST of CmUC02G026940 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 23/98 (23.47%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 69  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  + +++     +    +E+   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of CmUC02G026940 vs. ExPASy TrEMBL
Match: A0A5A7SR30 (Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003550 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.0e-78
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of CmUC02G026940 vs. ExPASy TrEMBL
Match: A0A1S3C1X2 (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.0e-78
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of CmUC02G026940 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 156/169 (92.31%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRR+FLSLTASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of CmUC02G026940 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFP 60
           MASPTLITP TSKSQ    PLKPKS+ISAAA+TT     RRR+FLSLTASVLAPS VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKAL 120
            +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of CmUC02G026940 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFP 60
           MASPTLITP TSKSQ    PLKPKS+ISAAA+TT     RRR+FLSLTASVLAPS VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKAL 120
            +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of CmUC02G026940 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 194.5 bits (493), Expect = 6.8e-50
Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 38  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAA 97
           RRDFLSL  T+++L  S+     +P  AA DEEY+KDTS VI KVR+T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]

BLAST of CmUC02G026940 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05
Identity = 23/98 (23.47%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 69  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  + +++     +    +E+   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:

BLAST of CmUC02G026940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887363.1	7.3e-78	94.08	photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]	[more]
XP_008455335.1	1.2e-77	92.90	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo] ...	[more]
XP_004136817.1	6.2e-77	92.31	photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN4360...	[more]
XP_022952622.1	3.3e-70	87.21	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ...	[more]
KAG6572353.1	5.6e-70	86.13	Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro...	[more]

BLAST of CmUC02G026940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR64	9.6e-49	75.37	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9ZVZ9	1.9e-04	23.47	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of CmUC02G026940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR30	6.0e-78	92.90	Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C1X2	6.0e-78	92.90	photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0K1S2	3.0e-77	92.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1	[more]
A0A6J1HZH1	1.6e-70	87.21	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O...	[more]
A0A6J1GKW7	1.6e-70	87.21	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata...	[more]

BLAST of CmUC02G026940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03600.1	6.8e-50	75.37	photosystem II family protein	[more]
AT1G05385.1	1.4e-05	23.47	photosystem II 11 kDa protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	1.20.58.810	Photosystem II Pbs27	coord: 64..169 e-value: 3.1E-40 score: 138.9
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 64..165 e-value: 3.3E-32 score: 111.7
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..169
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 43..165 score: 24.029087
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC02G026940.1	CmUC02G026940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071484	cellular response to light intensity
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009523	photosystem II