CmUC01G023960 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G023960
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr01: 35507714 .. 35508145 (+)
RNA-Seq Expression	CmUC01G023960
Synteny	CmUC01G023960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGCAATTGACACGAAGAAGACGAAGAAGAGGAGAACATTCAGCTTCCAGAGGCTAAGAGATTCGTGGAAGTGGAAATTCCTTAGAGATTTCAAGTGGAAGAGATTGAATCTCCAGATCGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTCTGTTTGAGGCCATTGCGTTAGTAGGCATCGCCGGCTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTCTGATCGATTCTACGAACCGAATCGATCAATTTGTATGTGCTTCCTAATTAACCGAATTCTATATGTATTTGTTAATTGTTATAAAACTTTTCTTCCTCTTCAGTATTTTTTTTCAAGTCATTCTTAATTCGTTCATTAATTCTGTCTCTCGCTAAGCACTCTGCAAGCGAAAATAATGTCGAATTACGCTTCTCTTTGTGA

mRNA sequence

ATGGATGATGCAATTGACACGAAGAAGACGAAGAAGAGGAGAACATTCAGCTTCCAGAGGCTAAGAGATTCGTGGAAGTGGAAATTCCTTAGAGATTTCAAGTGGAAGAGATTGAATCTCCAGATCGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTCTGTTTGAGGCCATTGCGTTAGTAGGCATCGCCGGCTTCTTCTTCCTCTGTTGTGGCGTATTTTTTTTCAAGTCATTCTTAATTCGTTCATTAATTCTGTCTCTCGCTAAGCACTCTGCAAGCGAAAATAATGTCGAATTACGCTTCTCTTTGTGA

Coding sequence (CDS)

ATGGATGATGCAATTGACACGAAGAAGACGAAGAAGAGGAGAACATTCAGCTTCCAGAGGCTAAGAGATTCGTGGAAGTGGAAATTCCTTAGAGATTTCAAGTGGAAGAGATTGAATCTCCAGATCGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTCTGTTTGAGGCCATTGCGTTAGTAGGCATCGCCGGCTTCTTCTTCCTCTGTTGTGGCGTATTTTTTTTCAAGTCATTCTTAATTCGTTCATTAATTCTGTCTCTCGCTAAGCACTCTGCAAGCGAAAATAATGTCGAATTACGCTTCTCTTTGTGA

Protein sequence

MDDAIDTKKTKKRRTFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAGFFFLCCGVFFFKSFLIRSLILSLAKHSASENNVELRFSL

Homology

[Close]

BLAST of CmUC01G023960 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MDDAIDTKKTKKRRTFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIA 60
          MDDAID KKTKKRR FS QRLRDSWKWKFL+DFKWKRLNL IGF DAIIFRI SLFEAIA
Sbjct: 1  MDDAIDRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIA 60

Query: 61 LVGIAGFFFLCCG 74
          L+GIAGFFFLCCG
Sbjct: 61 LIGIAGFFFLCCG 73

[Close]

BLAST of CmUC01G023960 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 6.8e-26
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MDDAIDTKKTK--KRRTFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDAID KKTK  K+R FSFQRLRDSWKWKFL++FKWKRLNLQ+GFFDAIIFRIVSLFE 
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 IALVGIAGFFFLCCG 74
          +ALVGIA FFFLCCG
Sbjct: 61 VALVGIASFFFLCCG 75

[Close]

BLAST of CmUC01G023960 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 8.4e-24
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MDDAIDTKKTKKRRTFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIA 60
          MDDAID KKTKKRR FS QRLRDSWKWKFL+DFKWKRLNL IGF DAIIFRI SLFEAIA
Sbjct: 1  MDDAIDRKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEAIA 60

Query: 61 LVGIAGFF 69
          L+GIAGFF
Sbjct: 61 LIGIAGFF 68

[Close]

BLAST of CmUC01G023960 vs. NCBI nr
Match: XP_030972441.1 (uncharacterized protein LOC115992393 [Quercus lobata])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 11 KKRRTFSFQRLR--DSWKWKFLRD-FKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAGF 70
          KK R   F+RLR   +W+WKFL   FKWKRLNLQ+ F D ++FRI+S+FEAI LV    F
Sbjct: 4  KKNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 71 FFLCCGVFF 77
          F+LCCG  F
Sbjct: 64 FYLCCGCHF 72

[Close]

BLAST of CmUC01G023960 vs. NCBI nr
Match: ESR62900.1 (hypothetical protein CICLE_v10017350mg [Citrus clementina])

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-09
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 9  KTKKRRTFSFQRL--RDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAG 68
          K   RR   F+RL  R+S +WKFL   KWKRLNLQI FFD ++F+IVS+FEA+ LV  A 
Sbjct: 15 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 74

Query: 69 FFFLCCGVFF 77
          FFFLCCG  F
Sbjct: 75 FFFLCCGCHF 82

[Close]

BLAST of CmUC01G023960 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.3e-26
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MDDAIDTKKTK--KRRTFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEA 60
          MDDAID KKTK  K+R FSFQRLRDSWKWKFL++FKWKRLNLQ+GFFDAIIFRIVSLFE 
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 IALVGIAGFFFLCCG 74
          +ALVGIA FFFLCCG
Sbjct: 61 VALVGIASFFFLCCG 75

[Close]

BLAST of CmUC01G023960 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 11 KKRRTFSFQRLR--DSWKWKFLRD-FKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAGF 70
          KK R   F+RLR   +W+WKFL   FKWKRLNLQ+ F D ++FRI+S+FEAI LV    F
Sbjct: 4  KKNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 71 FFLCCGVFF 77
          F+LCCG  F
Sbjct: 64 FYLCCGCHF 72

[Close]

BLAST of CmUC01G023960 vs. ExPASy TrEMBL
Match: A0A067GHI9 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 9  KTKKRRTFSFQRL--RDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAG 68
          K   RR   F+RL  R+S +WKFL   KWKRLNLQI FFD ++F+IVS+FEA+ LV  A 
Sbjct: 17 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 76

Query: 69 FFFLCCGVFF 77
          FFFLCCG  F
Sbjct: 77 FFFLCCGCHF 84

[Close]

BLAST of CmUC01G023960 vs. ExPASy TrEMBL
Match: V4UFE9 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 9  KTKKRRTFSFQRL--RDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAG 68
          K   RR   F+RL  R+S +WKFL   KWKRLNLQI FFD ++F+IVS+FEA+ LV  A 
Sbjct: 15 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 74

Query: 69 FFFLCCGVFF 77
          FFFLCCG  F
Sbjct: 75 FFFLCCGCHF 82

[Close]

BLAST of CmUC01G023960 vs. ExPASy TrEMBL
Match: A0A1R3FVP9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MDDAIDTKKTKKRRTFSFQRLRDSWKWKFLRD-FKWKRLNLQIGFFDAIIFRIVSLFEAI 60
          MD    +  + KR     + +++SW+WKFL   FKWKRLN+Q+ FFD ++FRI S+ EAI
Sbjct: 1  MDKTSSSSSSSKRWVLFKRLIKESWRWKFLGSAFKWKRLNIQLSFFDDVLFRIASVLEAI 60

Query: 61 ALVGIAGFFFLCCGVFF 77
           LV    FF+LCCG  F
Sbjct: 61 YLVATLCFFYLCCGCHF 77

[Close]

BLAST of CmUC01G023960 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.9e-05
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 8  KKTKKRRTFSFQRLRDSWKWKFLRDFKWKRLNLQIGFFDAIIFRIVSLFEAIALVGIAGF 67
          K TK+R    F  L            KWKRLNL++ F + + +RI+S+ EA+ LV    F
Sbjct: 11 KTTKERTRLKFLGLGGG--------LKWKRLNLKMTFLETLRYRIMSIIEAMVLVSKLAF 70

Query: 68 FFLCCGVFF 77
          FFLCCG  F
Sbjct: 71 FFLCCGCKF 71

The following BLAST results are available for this feature:

BLAST of CmUC01G023960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034699.1	2.1e-27	89.04	hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN49382.1	6.8e-26	85.33	hypothetical protein Csa_004198 [Cucumis sativus]	[more]
KAG6581417.1	8.4e-24	88.24	hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_030972441.1	1.5e-09	57.97	uncharacterized protein LOC115992393 [Quercus lobata]	[more]
ESR62900.1	3.4e-09	60.00	hypothetical protein CICLE_v10017350mg [Citrus clementina]	[more]

BLAST of CmUC01G023960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G023960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLX9	3.3e-26	85.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1	[more]
A0A7N2LSF8	7.4e-10	57.97	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A067GHI9	1.7e-09	60.00	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1	[more]
V4UFE9	1.7e-09	60.00	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 ...	[more]
A0A1R3FVP9	2.2e-09	48.05	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1	[more]

BLAST of CmUC01G023960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46295.1	1.9e-05	42.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33726:SF3	TRANSMEMBRANE PROTEIN	coord: 11..73
None	No IPR available	PANTHER	PTHR33726	TRANSMEMBRANE PROTEIN	coord: 11..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G023960.1	CmUC01G023960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane