CmUC01G014090 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G014090
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	U6 snRNA-associated Sm-like protein LSm8
Location	CmU531Chr01: 27500090 .. 27502805 (+)
RNA-Seq Expression	CmUC01G014090
Synteny	CmUC01G014090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTGGACCTGGACTTGAATCTCTGGTTGATCGTAAGTAATTTTATTTATAATCCCTCAATGTTTTTATACATATATTAGTATGCGTAGTTCATTCAGTGTGACAATGGGGTAATTAGTCCTACGAGGATATTGTATAAATTGTCCTTGAGGTGTGCAAGTTGAATAGATTGTCCTCTTTTGTGCTGGGTATGAACTGTTTTCGGCGATTCAAAAGCACCTCTTGTATCCTTTTATACTCTGTCGAGGATACTACATTGGAAAAATCAAGGGACTTGACAGTCTTTACAATATACATGGACTACTTCTCTCATTGTCAATTCGTTTTGAGATGAAATCATATGTTATCTAATGTGCTGTTTTTGCTCTTCTCACCTGCTTGCACTAAAATCATGCTCTTAACTTTTCTTTTTTAGAAACAATATCAGTTATCACAAATGACGGTCGCAATATAGTGGTATGTTCATGAGCTATCATCCAGTTGACTGATATTTCATCCACCCAATTTGTGTTTATGTTAACAATACTTTATGCAGGGAGTGTTGAAAGGGTTTGACCAGGCTACGAATATTATCCTTGATGAATCTCATGAACGTGTTTACTCAACCAAGGTTTGTACAATAACTGATGTAGCTAAGTTGGAATTTTCTACTTTCTGTTGCTCTTTCATTGAGTGTTAGTTTAGAGAGAGAATTATATCAATATGTACAAGTAAGTTTTATAGTTCAGTTTCTGCTCTTTGTGGCCATCCTTTTCTGATTTATTTTGTCAAATGTCCTTGGACTTTCTATTTGAACAATTTCTTTGGCTTTCGCTATTTTGAATGTTTACTCTGGTTCTTTTTGCAGATTTCTATTTTCTCATCCCTTGAAAACTTGTTTTGTAGTAGAGTAGAATAAGATATTGTTCCTTCTTTCTTCTACTCACTGGATATGAGCAAAATCTTATTACACCTTAGTGGATGCATCTCTATTCTGGTGGTCCAAACAAAAAGTTTCATAATGTCTGATTGTTGTTTGTATTTTTTGTTTATATTTTAAATTAGAAAACACGATCGTACATTGGTTAAATAATGTGATTTGAGATGTTAAATAATCGGGAGAGATGTGAAAAGAAGTAGAAGCAATAAGGGGATAACATGGTGATTAAGAAGTGGGAATTCTAGAAACCATCATGGATTGGCCTAGTAGTAAAAAGGAGACATAGTCTCAATAAATGGCTAAGAGGTCAAGGGTTCAATCCATGGTGGCCACCTACCTAAGAATTAATTACTTACAAGTTTCCTTGACACCCAAATGTTGTAGGGTCAAGTGGCTTGTCCCGTGAGATTAGTCGAGGTGCGCGTAAACTGGCCTGGACACTCACAGATATCAAAAAAAAGAAAAAAGAAAAAAGTGGGAGTTCTAGACTTTCAATTGACCATACATCGAAGTATACATGAAGGGCTTGCATGCCCTAGTTTGCCATCTCTATTCTATGCAATGGATAGTATGTCATCCAGTTTTCATTTTTGTGTATTCATTTTCAATTATTCACCACATAGGCCTTTGTTTTGGGAAACTGATTCCATGACTATATTTATATAGTTTTTGTTCTTTACCGGTTACATAGTGCAAATAACTACTACTAGCATTTTCATATGGATCATATAGTTCAAAGAACTACTACTAGCATTTTCATATGGATCATAATTTTACACTCAACGTAAATGTTTATACTCATTAAATTGTGTGAACGGATAAACTTTCATGTGATTTGGGTCCTTGAATTTTCTGACAGGCTTTCAAGGGATTTAAGACTATGCATTTGCCTTTGAATCATTTTGTAACTCAATACTACTCTTGATCTGCAGGAAGGCGTTCAGCAACTTGTTTTGGGTTTATATATAATCAGAGGCGACAATATGTAACTACCATCTCACTTTTTTCTTCTTTTCTTTCTTGGTTTAATACTATATTTAACTATTTAAGTTCCTCTACTTTTGATTTTGGTTCATTTTGGTTTCTATACTTCCAATATGGTCATATACTTTTAACTTTGGTTCATTTTGGGCCCTGTACTTTCAAAATATTCATTTTGTTCCTTGTACTTTTGAAAAGTGACCATTTTGGTCCCTTCATTCTCATTTTTATATCATTTTTAAGATACCAAAATGAACCAAAGTTGAAAGTACAAAGACCAAAAATGAACATTTTGAAAGTATAGGGACCAAAATGAACCAAAATTCAAAGTAGAAGGACCAAAATGAATATTCTGAAAGTACAAGGACTAAAATGAACAAAAACCAAAAGTATAGGAACCAAAGTAGTATTTAAACATTTCTTTCTTTTCTTTCATAAGTTTTTAAAACAAAGAGTGTTTTAATGCTGACAAAGGCAGAGGTTAAAGGTTCAAATCTCCATTTTGCATATTGTTAAACTGAAAAAAAAAAGGAGAAAAAAGAAAAAAAGAAGATTGTTGTGAAAACATGTTCAACTAAACTACTTCAAAATTATATATATATATATATATTTTTTCCTTATTTTCATTTTTTATATTTTACCATGGTCTACTTTTTTAACCATTAAACTGTTCTAGAATTTGAATAGAGATGGTGATAATGAGTTGTTTATTCTCTCATTGTTTTTATATTTTACAAACTCAAGCTCAAATTGTTTTGAAACTCACAAAGTTCTTAATTTTCTGCAGAAGCATTGTTGGGGAGCTAGATGA

mRNA sequence

ATGGCAAGTGGACCTGGACTTGAATCTCTGGTTGATCAAACAATATCAGTTATCACAAATGACGGTCGCAATATAGTGGGAGTGTTGAAAGGGTTTGACCAGGCTACGAATATTATCCTTGATGAATCTCATGAACGTGTTTACTCAACCAAGGGTCAAGTGGCTTGTCCCGTGAGATTAGTCGAGGTGCGCGTAAACTGGCCTGGACACTCACAGATATCAAAAAAAAGAAAAAAGAAAAAAGTGGGAGTTCTAGACTTTCAATTGACCATACATCGAAGTATACATGAAGGGCTTGCATGCCCTAGTTTGCCATCTCTATTCTATGCAATGGATAGAAGGCGTTCAGCAACTTGTTTTGGGTTTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGA

Coding sequence (CDS)

ATGGCAAGTGGACCTGGACTTGAATCTCTGGTTGATCAAACAATATCAGTTATCACAAATGACGGTCGCAATATAGTGGGAGTGTTGAAAGGGTTTGACCAGGCTACGAATATTATCCTTGATGAATCTCATGAACGTGTTTACTCAACCAAGGGTCAAGTGGCTTGTCCCGTGAGATTAGTCGAGGTGCGCGTAAACTGGCCTGGACACTCACAGATATCAAAAAAAAGAAAAAAGAAAAAAGTGGGAGTTCTAGACTTTCAATTGACCATACATCGAAGTATACATGAAGGGCTTGCATGCCCTAGTTTGCCATCTCTATTCTATGCAATGGATAGAAGGCGTTCAGCAACTTGTTTTGGGTTTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGA

Protein sequence

MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRLVEVRVNWPGHSQISKKRKKKKVGVLDFQLTIHRSIHEGLACPSLPSLFYAMDRRRSATCFGFIYNQRRQYKHCWGAR

Homology

[Close]

BLAST of CmUC01G014090 vs. NCBI nr
Match: XP_038893736.1 (sm-like protein LSM8 isoform X2 [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 78/137 (56.93%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 1   MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRL 60
           MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK         
Sbjct: 1   MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK--------- 60

Query: 61  VEVRVNWPGHSQISKKRKKKKVGVLDFQLTIHRSIHEGLACPSLPSLFYAMDRRRSATCF 120
            E++                         T+H              L +    RRSATCF
Sbjct: 61  -ELK-------------------------TMH--------------LPFESAGRRSATCF 88

Query: 121 GFIYNQRRQYKHCWGAR 138
           G IYNQRRQYKHCWGAR
Sbjct: 121 GSIYNQRRQYKHCWGAR 88

[Close]

BLAST of CmUC01G014090 vs. NCBI nr
Match: XP_022155134.1 (sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955137.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955138.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955139.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955140.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022994688.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994689.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994690.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994691.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994692.1 sm-like protein LSM8 [Cucurbita maxima] >XP_023541242.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541244.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541245.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541246.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_038893733.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893734.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893735.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >KAG6573000.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012184.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 51

[Close]

BLAST of CmUC01G014090 vs. NCBI nr
Match: XP_039026549.1 (sm-like protein LSM8 [Hibiscus syriacus] >KAE8680206.1 U6 snRNA-associated Sm-like protein LSm8 [Hibiscus syriacus])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MA+GPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Sbjct: 1  MATGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 51

[Close]

BLAST of CmUC01G014090 vs. NCBI nr
Match: XP_031403511.1 (sm-like protein LSM8 [Punica granatum] >OWM62698.1 hypothetical protein CDL15_Pgr019992 [Punica granatum])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 51

[Close]

BLAST of CmUC01G014090 vs. NCBI nr
Match: XP_004137538.1 (sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_008437187.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_016901717.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_031736453.1 sm-like protein LSM8 [Cucumis sativus] >XP_031736454.1 sm-like protein LSM8 [Cucumis sativus] >KGN64224.1 hypothetical protein Csa_014109 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 51

[Close]

BLAST of CmUC01G014090 vs. ExPASy Swiss-Prot
Match: Q8VYI0 (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-18
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTK 51

[Close]

BLAST of CmUC01G014090 vs. ExPASy Swiss-Prot
Match: Q3ZCE0 (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST 51
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSS 48

[Close]

BLAST of CmUC01G014090 vs. ExPASy Swiss-Prot
Match: O95777 (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST 51
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSS 48

[Close]

BLAST of CmUC01G014090 vs. ExPASy Swiss-Prot
Match: Q6ZWM4 (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST 51
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSS 48

[Close]

BLAST of CmUC01G014090 vs. ExPASy Swiss-Prot
Match: Q5RCP3 (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST 51
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSS 48

[Close]

BLAST of CmUC01G014090 vs. ExPASy TrEMBL
Match: A0A6J1K221 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC111490340 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.1e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 51

[Close]

BLAST of CmUC01G014090 vs. ExPASy TrEMBL
Match: A0A6J1GT46 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111457194 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.1e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 51

[Close]

BLAST of CmUC01G014090 vs. ExPASy TrEMBL
Match: A0A6J1DPC5 (U6 snRNA-associated Sm-like protein LSm8 OS=Momordica charantia OX=3673 GN=LOC111022273 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.1e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 51

[Close]

BLAST of CmUC01G014090 vs. ExPASy TrEMBL
Match: A0A1S3ATI1 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 51

[Close]

BLAST of CmUC01G014090 vs. ExPASy TrEMBL
Match: A0A218VR65 (U6 snRNA-associated Sm-like protein LSm8 OS=Punica granatum OX=22663 GN=LOC116212908 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 51

[Close]

BLAST of CmUC01G014090 vs. TAIR 10
Match: AT1G65700.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-19
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTK 51

[Close]

BLAST of CmUC01G014090 vs. TAIR 10
Match: AT1G65700.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-19
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTK 51

[Close]

BLAST of CmUC01G014090 vs. TAIR 10
Match: AT1G65700.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-19
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK 52
          MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTK 51

[Close]

BLAST of CmUC01G014090 vs. TAIR 10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 45.1 bits (105), Expect = 5.4e-05
Identity = 20/54 (37.04%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRL 61
          L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    G + C + L
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERV--IVGDLYCDIPL 66

[Close]

BLAST of CmUC01G014090 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.6e-04
Identity = 20/58 (34.48%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKGQVACPVRLVEVR 65
          L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV   +     P+ L  +R
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIR 72

The following BLAST results are available for this feature:

BLAST of CmUC01G014090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893736.1	1.1e-26	56.93	sm-like protein LSM8 isoform X2 [Benincasa hispida]	[more]
XP_022155134.1	1.1e-18	100.00	sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 ...	[more]
XP_039026549.1	2.4e-18	98.04	sm-like protein LSM8 [Hibiscus syriacus] >KAE8680206.1 U6 snRNA-associated Sm-li...	[more]
XP_031403511.1	2.4e-18	98.04	sm-like protein LSM8 [Punica granatum] >OWM62698.1 hypothetical protein CDL15_Pg...	[more]
XP_004137538.1	2.4e-18	98.04	sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-like protei...	[more]

BLAST of CmUC01G014090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI0	7.1e-18	88.24	Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1	[more]
Q3ZCE0	1.9e-10	65.91	U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3	[more]
O95777	1.9e-10	65.91	U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV...	[more]
Q6ZWM4	1.9e-10	65.91	U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 S...	[more]
Q5RCP3	1.9e-10	65.91	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV...	[more]

BLAST of CmUC01G014090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K221	5.1e-19	100.00	U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GT46	5.1e-19	100.00	U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DPC5	5.1e-19	100.00	U6 snRNA-associated Sm-like protein LSm8 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3ATI1	1.1e-18	98.04	U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675...	[more]
A0A218VR65	1.1e-18	98.04	U6 snRNA-associated Sm-like protein LSm8 OS=Punica granatum OX=22663 GN=LOC11621...	[more]

BLAST of CmUC01G014090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65700.1	5.1e-19	88.24	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.2	5.1e-19	88.24	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.3	5.1e-19	88.24	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	5.4e-05	37.04	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	4.6e-04	34.48	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..63 e-value: 1.9E-6 score: 37.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..62 e-value: 7.0E-12 score: 44.9
None	No IPR available	GENE3D	2.30.30.100		coord: 4..66 e-value: 3.9E-17 score: 63.5
None	No IPR available	PANTHER	PTHR15588:SF9	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8	coord: 5..51
IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8	PANTHER	PTHR15588	LSM1	coord: 5..51
IPR034103	Sm-like protein Lsm8	CDD	cd01727	LSm8	coord: 5..54 e-value: 2.22837E-25 score: 90.2776
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 7..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G014090.1	CmUC01G014090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding