Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCGAGCCCTGGATGTTGCTCCTCCCCGTCTACCGCCGTCATGTAGTACCGCTCATCCTGGTTCCGTGTTAGTAAGCATCGCACCACCTATTATTTTTTCTTTTTCTCTAAGTCAGGTTTTTGTTTCAGTTTGATTTCTCTGATGTTTGTTCGCCGTTTAGCACAATTGTTTGTTCATCTCTAATTGCCACTGGTCTTAGATGTGGGTAAGTGTTAGAGAAGTTTTTGGATTTTACTGAATTATTTAGGATTACCTACTAATCTTTTGGCTTAAAAATTGTTTACCCTTAATCTTTTGGGTCTAGATTTGAGGCTTTGAGGTATTTAAGGCTGTTATCCATTAAGGAAAAAGAAGAGTCAAAGGTACAATCAGCTATGTCACGGTGTACAACCTTATACAGTCAGCTGAGCAAAAGATTCAAAGTCACCAATATTCTAGAAAAATCGGTTTGTTAGAATTTGGTTATAGATTTTTATTATTGTCCAATTATACATCAACATGTATATACCACTAAGATGATTTTATTTACCCTAATTGAGGGTGTGCGTGTTTAAAAAGGCTATGTGCCTCTCCCAATTCATTCAATATAGAGAAATGCTGAAATAGAAAGAATTCCGGCAGCTGTCTCGCTCTCTCGCTAGTCTGTGTGTCTTGCTAGTCTCGTTTCTTATTTCTCACTACTCTCGCTTCTTATTTTGGTATTAGAGCCGAATAGCTAACGCCTCTAGCAATCCTCCAACAGTCACCAGAACACCTGATTTCAGTAGCCCTCCATTGAACCAACTGCTGAACCAAATCACCACTATTAAGCTAGCTCTCCTCATCCTTTGTGGCTACCAAATTGAAGGCTATCTCCTAGGGCAAAAGGTTTGCCCACCCATGTTTGTCTAGCGAAACTCCAACAATGGAAGCATGCTACCAAAGCATCCAGCTCTCAAGTCGCAACCAACGACATTGTGACCCACGAGACAACCGAAGTCATCAATCCAGTGTATGAAGCATGGCTCATTGTTGACCAGCTGCTCCTGGGTTGGCTCTACAACTCCATGACACCTAAAGTGGCCACACAGCTCATGGGCTTTGAACGATCGTATGTTTGAATATTTACTACTGATGAAAATGCATTTTGATAATTTAGGGCAAGCTGGGAGTCCCGTTTTGACAAGGGCATTGATATCTCAAGTTCTACTCGGGCTCAATGAAGACTATAATGCCATCATTGCCACACTCTAAGGAAAGCCAGATATCACATGGCTACAAATGCAATCTGAGCTCCTGTCCTACGAAAAGAGGCTAGAAGCTCAAAATTCACAAAGAAACGAAGTCACAAGCAAAAATCCATCTGTGAACATGGTTAATAGCAGAGGAGCTGGACCTCAACAACCACAAAATCCGACATCACAAAGCCATGGATGTGGCAGAAGTCAATACAGTGGGCAACACGGAGGAAATCAATTCGAAAATAGAGGACAAGGTATGAGTAGAAATCGACCAGCTTGTCAAGTTTGTGGGAATGTTAGTCACACTGCAGATGTGTGTTACAATCGATTCAACAAGGAATTCACTCCCAACTTCAATCAGAACAAAAATAGCGCCAGTAGCAACAACTTCAGAAACAACAATAGGAAACCTCTTACTGCCATGGTTGCCACACATAATGAAAATCCCTTCACTTCGAATTATGAAAGCACAGTCGATCAAAGTTGATATGCTGATAGTGGAGCAATAAATCATGTGACCTCCGACTACAACAATCTCACAAACTCGACTGAATATGAAGGTAATGAGTTGGTAACTGCTGGCAATGGTAATACATTGCAGATTGCTTCTATTGCTAATACGTTTTTGACTAATGGAAAGTATTCATTGAATTTGAATAATATACTGCATGTTCCTGATATTGCTAAAAATCTTGTTAGTGTATCTAAATTGGCCAAGGATAGTAACGCTTTCATTGAATTTCACAATAACTATTGTCTTGTAAAGGACAAGGGTTCGAGGCAAACAATTTTGAAGGGCATACTTAGAGATAGGTTGTATCATCTAGAAGAAGCTATTGTGAAACCTAGTGTTGTTCCGGTGAGACTTGCTGCTGCTTGTGAATCCAAGATGGTTGTGAATATAAATAAATCCAAGATGGTTGTATCTAAAACTACTTGGCATTGA
mRNA sequence
ATGAGTCGAGCCCTGGATGTTGCTCCTCCCCGTCTACCGCCGTCATGTAGTACCGCTCATCCTGGTTCCGTGTTATTTGATTTCTCTGATGTTTGTTCGCCGTTTAGCACAATTGTTTGTTCATCTCTAATTGCCACTGGTCTTAGATGTGGGCTGTTATCCATTAAGGAAAAAGAAGAGTCAAAGGTACAATCAGCTATGTCACGGTGTACAACCTTATACAGTCAGCTGAGCAAAAGATTCAAAGTCACCAATATTCTAGAAAAATCGAGCCGAATAGCTAACGCCTCTAGCAATCCTCCAACAGTCACCAGAACACCTGATTTCAGTAGCCCTCCATTGAACCAACTGCTGAACCAAATCACCACTATTAAGCTAGCTCTCCTCATCCTTTGTGGCTACCAAATTGAAGGCTATCTCCTAGGGCAAAAGGTTTGCCCACCCATCTCTCAAGTCGCAACCAACGACATTGTGACCCACGAGACAACCGAAGTCATCAATCCAGTGTATGAAGCATGGCTCATTGTTGACCAGCTGCTCCTGGGTTGGCTCTACAACTCCATGACACCTAAAGTGGCCACACAGCTCATGGGCTTTGAACGATCGGCAAGCTGGGAGTCCCGTTTTGACAAGGGCATTGATATCTCAAGAAAGCCAGATATCACATGGCTACAAATGCAATCTGAGCTCCTGTCCTACGAAAAGAGGCTAGAAGCTCAAAATTCACAAAGAAACGAAGTCACAAGCAAAAATCCATCTGTGAACATGGTTAATAGCAGAGGAGCTGGACCTCAACAACCACAAAATCCGACATCACAAAGCCATGGATGTGGCAGAAGTCAATACAGTGGGCAACACGGAGGAAATCAATTCGAAAATAGAGGACAAGGTATGAGTAGAAATCGACCAGCTTGTCAAGTTTGTGGGAATGTTAGTCACACTGCAGATGTGTGTTACAATCGATTCAACAAGGAATTCACTCCCAACTTCAATCAGAACAAAAATAGCGCCAGTAGCAACAACTTCAGAAACAACAATAGGAAACCTCTTACTGCCATGGTTGCCACACATAATGAAAATCCCTTCACTTCGAATTATGAAAGCACAGTCGATCAAAGTAATGAGTTGGTAACTGCTGGCAATGGTAATACATTGCAGATTGCTTCTATTGCTAATACGTTTTTGACTAATGGAAAGTATTCATTGAATTTGAATAATATACTGCATGTTCCTGATATTGCTAAAAATCTTGTTAGTGTATCTAAATTGGCCAAGGATAGTAACGCTTTCATTGAATTTCACAATAACTATTGTCTTGTAAAGGACAAGGGTTCGAGGCAAACAATTTTGAAGGGCATACTTAGAGATAGGTTGTATCATCTAGAAGAAGCTATTGTGAAACCTAGTGTTGTTCCGGTGAGACTTGCTGCTGCTTGTGAATCCAAGATGGTTGTGAATATAAATAAATCCAAGATGGTTGTATCTAAAACTACTTGGCATTGA
Coding sequence (CDS)
ATGAGTCGAGCCCTGGATGTTGCTCCTCCCCGTCTACCGCCGTCATGTAGTACCGCTCATCCTGGTTCCGTGTTATTTGATTTCTCTGATGTTTGTTCGCCGTTTAGCACAATTGTTTGTTCATCTCTAATTGCCACTGGTCTTAGATGTGGGCTGTTATCCATTAAGGAAAAAGAAGAGTCAAAGGTACAATCAGCTATGTCACGGTGTACAACCTTATACAGTCAGCTGAGCAAAAGATTCAAAGTCACCAATATTCTAGAAAAATCGAGCCGAATAGCTAACGCCTCTAGCAATCCTCCAACAGTCACCAGAACACCTGATTTCAGTAGCCCTCCATTGAACCAACTGCTGAACCAAATCACCACTATTAAGCTAGCTCTCCTCATCCTTTGTGGCTACCAAATTGAAGGCTATCTCCTAGGGCAAAAGGTTTGCCCACCCATCTCTCAAGTCGCAACCAACGACATTGTGACCCACGAGACAACCGAAGTCATCAATCCAGTGTATGAAGCATGGCTCATTGTTGACCAGCTGCTCCTGGGTTGGCTCTACAACTCCATGACACCTAAAGTGGCCACACAGCTCATGGGCTTTGAACGATCGGCAAGCTGGGAGTCCCGTTTTGACAAGGGCATTGATATCTCAAGAAAGCCAGATATCACATGGCTACAAATGCAATCTGAGCTCCTGTCCTACGAAAAGAGGCTAGAAGCTCAAAATTCACAAAGAAACGAAGTCACAAGCAAAAATCCATCTGTGAACATGGTTAATAGCAGAGGAGCTGGACCTCAACAACCACAAAATCCGACATCACAAAGCCATGGATGTGGCAGAAGTCAATACAGTGGGCAACACGGAGGAAATCAATTCGAAAATAGAGGACAAGGTATGAGTAGAAATCGACCAGCTTGTCAAGTTTGTGGGAATGTTAGTCACACTGCAGATGTGTGTTACAATCGATTCAACAAGGAATTCACTCCCAACTTCAATCAGAACAAAAATAGCGCCAGTAGCAACAACTTCAGAAACAACAATAGGAAACCTCTTACTGCCATGGTTGCCACACATAATGAAAATCCCTTCACTTCGAATTATGAAAGCACAGTCGATCAAAGTAATGAGTTGGTAACTGCTGGCAATGGTAATACATTGCAGATTGCTTCTATTGCTAATACGTTTTTGACTAATGGAAAGTATTCATTGAATTTGAATAATATACTGCATGTTCCTGATATTGCTAAAAATCTTGTTAGTGTATCTAAATTGGCCAAGGATAGTAACGCTTTCATTGAATTTCACAATAACTATTGTCTTGTAAAGGACAAGGGTTCGAGGCAAACAATTTTGAAGGGCATACTTAGAGATAGGTTGTATCATCTAGAAGAAGCTATTGTGAAACCTAGTGTTGTTCCGGTGAGACTTGCTGCTGCTTGTGAATCCAAGATGGTTGTGAATATAAATAAATCCAAGATGGTTGTATCTAAAACTACTTGGCATTGA
Protein sequence
MSRALDVAPPRLPPSCSTAHPGSVLFDFSDVCSPFSTIVCSSLIATGLRCGLLSIKEKEESKVQSAMSRCTTLYSQLSKRFKVTNILEKSSRIANASSNPPTVTRTPDFSSPPLNQLLNQITTIKLALLILCGYQIEGYLLGQKVCPPISQVATNDIVTHETTEVINPVYEAWLIVDQLLLGWLYNSMTPKVATQLMGFERSASWESRFDKGIDISRKPDITWLQMQSELLSYEKRLEAQNSQRNEVTSKNPSVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTVDQSNELVTAGNGNTLQIASIANTFLTNGKYSLNLNNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEAIVKPSVVPVRLAAACESKMVVNINKSKMVVSKTTWH
Homology
BLAST of CmUC01G010950 vs. NCBI nr
Match:
XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])
HSP 1 Score: 233.4 bits (594), Expect = 4.2e-57
Identity = 168/436 (38.53%), Postives = 227/436 (52.06%), Query Frame = 0
Query: 94 ANASSNPPTVTRTPDFSSPPLNQLLNQITTIK-----------LALLILCGYQIEGYLLG 153
A ++ PP+++ + FS+PPLNQ+LNQ+TT+K LAL IL Y++EG+L
Sbjct: 4 AQPTAAPPSLS-SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 63
Query: 154 QKVCPP---ISQVATNDIVTHE------------TTEVINPVYEAWLIVDQLLLGWLYNS 213
+ CP +S ++N VT E T ++NP++E W+ D LLLGWLYNS
Sbjct: 64 ETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 123
Query: 214 MTPKVATQLMGFERSAS-WESRFD---------------------KGID---------IS 273
MTP VA QLMGF W++ D KG+D I
Sbjct: 124 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIVVIQ 183
Query: 274 RKPDITWLQMQSELLSYEKRLEAQNSQRNEV--TSKNPSVNMVNSRGAGPQQPQNPTSQS 333
KPDI+WL MQS+LL +EKRL+ QN+Q+ +++P++NM Q+ Q+ +
Sbjct: 184 GKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQS-NKKF 243
Query: 334 HGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVCYNRFNKEFTPNFNQNK 393
+G R +SGQ G N P CQ+CG H+A VCYNRFNKEF+ QN+
Sbjct: 244 YGYNRQHFSGQRGN----------LNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNR 303
Query: 394 NSASSNNFRNNNRKPLTAMVATHNENPFT------------------------SNYESTV 446
N SSN + N V+T N PF SN +
Sbjct: 304 NEHSSNGSVSPNP---AVFVSTQNATPFATPDTVVDPNWYIDSGATNHVTRECSNMTNPT 363
BLAST of CmUC01G010950 vs. NCBI nr
Match:
TYJ99887.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 204.9 bits (520), Expect = 1.6e-48
Identity = 118/243 (48.56%), Postives = 153/243 (62.96%), Query Frame = 0
Query: 253 SVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNR--PACQVCGN 312
SVN V++RG+ PQ GC + G G N ++RG+G SR P C+VCG
Sbjct: 31 SVNKVSNRGSSNHTPQ-------GCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGK 90
Query: 313 VSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTV 372
+ HT D+CYNRFNK+F PN +N N ++NNFRNNN K TA V +H NPF E++V
Sbjct: 91 IGHTIDICYNRFNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSV 150
Query: 373 DQS--------NEL------------------VTAGNGNTLQIASIANTFLTNGKYSLNL 432
D + N + VT GNG+ L+I SI N+ L NG Y L+L
Sbjct: 151 DANWYANNRAMNHMTADYTNLANPVEYGGKVQVTIGNGDKLKITSIGNSTLMNGGYMLSL 210
Query: 433 NNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEA 468
+N+L+VP IAKNLVSVSK A+D + F+EFH++YCLVKD G+RQTILKG+L+D LYHLEEA
Sbjct: 211 DNVLYVPAIAKNLVSVSKRARDKHVFVEFHDDYCLVKDNGTRQTILKGMLKDDLYHLEEA 266
BLAST of CmUC01G010950 vs. NCBI nr
Match:
KAA0051899.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 203.0 bits (515), Expect = 6.1e-48
Identity = 117/243 (48.15%), Postives = 153/243 (62.96%), Query Frame = 0
Query: 253 SVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNR--PACQVCGN 312
SVN V++RG+ PQ GC + G G N ++RG+G SR P C+VCG
Sbjct: 31 SVNKVSNRGSSNHTPQ-------GCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGK 90
Query: 313 VSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTV 372
+ HT D+CYNRFNK+F PN +N N ++NNFRNNN K TA V +H NPF E++V
Sbjct: 91 IGHTIDICYNRFNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSV 150
Query: 373 DQS--------NEL------------------VTAGNGNTLQIASIANTFLTNGKYSLNL 432
D + N + VT GNG+ L+I SI N+ L NG Y L+L
Sbjct: 151 DANWYANNRAMNHMTADYTNLANPVEYGGKVQVTIGNGDKLKITSIGNSTLMNGGYMLSL 210
Query: 433 NNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEA 468
+N+L+VP IAK+LVSVSK A+D + F+EFH++YCLVKD G+RQTILKG+L+D LYHLEEA
Sbjct: 211 DNVLYVPAIAKHLVSVSKRARDKHVFVEFHDDYCLVKDNGTRQTILKGMLKDDLYHLEEA 266
BLAST of CmUC01G010950 vs. NCBI nr
Match:
XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])
HSP 1 Score: 193.4 bits (490), Expect = 4.8e-45
Identity = 146/413 (35.35%), Postives = 199/413 (48.18%), Query Frame = 0
Query: 94 ANASSNPPTVTRTPDFSSPPLNQLLNQITTIK-----------LALLILCGYQIEGYLLG 153
A ++ PP+++ + FS+PPLNQ+LNQ+TT+K LAL IL Y++EG+L
Sbjct: 4 AQPTAAPPSLS-SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 63
Query: 154 QKVCPP---ISQVATNDIVTHE------------TTEVINPVYEAWLIVDQLLLGWLYNS 213
+ CP +S ++N VT E T ++NP++E W+ D LLLGWLYNS
Sbjct: 64 ETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 123
Query: 214 MTPKVATQLMGFERSAS-WESRFD---------------------KGID---------IS 273
MTP VA QLMGF W++ D KG+D I
Sbjct: 124 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIVVIQ 183
Query: 274 RKPDITWLQMQSELLSYEKRLEAQNSQRNEV--TSKNPSVNMVNSRGAGPQQPQNPTSQS 333
KPDI+WL MQS+LL +EKRL+ QN+Q+ +++P++NM Q+ Q+ +
Sbjct: 184 GKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQS-NKKF 243
Query: 334 HGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVC--GNVSHTADVCYNRFNKEFTPNFNQ 393
+G R +SGQ G N P CQ+C G +H C N N
Sbjct: 244 YGYNRQHFSGQRGN----------LNNGPTCQLCDSGATNHVTRECSNMTN--------- 303
Query: 394 NKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTVDQSNELVTAGNGNTLQIASIAN 446
T E VT GNGN L I+ + N
Sbjct: 304 -----------------------------------PTEYSGIEKVTVGNGNRLNISYVGN 360
BLAST of CmUC01G010950 vs. NCBI nr
Match:
TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 174.9 bits (442), Expect = 1.8e-39
Identity = 114/274 (41.61%), Postives = 158/274 (57.66%), Query Frame = 0
Query: 215 ISRKPDITWLQMQSELLSYEKRLEAQNSQRNEVTSKNPSVNMVNSRGAGPQQPQNPTSQS 274
I KP+I+W+ MQSELL++EKRLE Q++Q+N VN+ +R + + + Q
Sbjct: 136 IQGKPEISWIDMQSELLTFEKRLEHQDTQKNTENIIQNVVNIAQNRNSSDFRKYS-NHQF 195
Query: 275 HGCGRSQYSGQHGGNQFENRGQGMSR-NRPACQVCGNVSHTADVCYNRFNKEFTPNFNQN 334
HG R+ GQ GG RG+G R N+P CQVC H+A VCYNRFNKEF Q+
Sbjct: 196 HGNNRNNSQGQRGGFNI-GRGRGKGRGNKPTCQVCEKYGHSALVCYNRFNKEFLSPLVQD 255
Query: 335 KNSASSNNFRNNNRKPLTAMVATHNENPFT---------------SNYESTVDQSN---- 394
+ + SSN +++N LT +V + N F + TV+ SN
Sbjct: 256 RGAQSSNFSKHSN---LTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSNLSNP 315
Query: 395 ------ELVTAGNGNTLQIASIANTFLTNGKYSLNLNNILHVPDIAKNLVSVSKLAKDSN 454
E + GNG++L I+ I N +LT+G LNL N+L VPDI KNLVSVSKLA+D+N
Sbjct: 316 SEYSGIEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNN 375
Query: 455 AFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLE 463
+IEFH YC +KDK + +T+L ++D LYHL+
Sbjct: 376 VYIEFHGCYCFIKDKDTGRTLLNRTIKDGLYHLD 404
BLAST of CmUC01G010950 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 51.6 bits (122), Expect = 3.0e-05
Identity = 75/282 (26.60%), Postives = 122/282 (43.26%), Query Frame = 0
Query: 222 TWLQMQSELLSYEKRLEAQNS------QRNEVTSKNPSVNMVNSRGAGPQQPQNPTSQSH 281
T ++ LL++E ++ A +S N V+ +N + N+ G +N +
Sbjct: 195 TLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNG-----NRNNRYDNR 254
Query: 282 GCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVC------YNRFNKE---- 341
+ Q F CQ+CG H+A C + N +
Sbjct: 255 NNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPS 314
Query: 342 -FTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYES-TVDQ---SNELVTAG 401
FTP + N A + + +NN L ATH+ TS++ + ++ Q + V
Sbjct: 315 PFTP-WQPRANLALGSPYSSNNW--LLDSGATHH---ITSDFNNLSLHQPYTGGDDVMVA 374
Query: 402 NGNTLQIASIANTFLTNGKYSLNLNNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLV 461
+G+T+ I+ +T L+ LNL+NIL+VP+I KNL+SV +L + +EF V
Sbjct: 375 DGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQV 434
Query: 462 KDKGSRQTILKGILRDRLYHLEEAIVKPSVVPVRLAAACESK 483
KD + +L+G +D LY A S PV L A+ SK
Sbjct: 435 KDLNTGVPLLQGKTKDELYEWPIA----SSQPVSLFASPSSK 461
BLAST of CmUC01G010950 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 48.9 bits (115), Expect = 1.9e-04
Identity = 64/256 (25.00%), Postives = 104/256 (40.62%), Query Frame = 0
Query: 219 PDITWLQMQSELLSYEKRLEAQNSQR------NEVTSKNPSVNMVNSRGAGPQQPQNPTS 278
P +T ++ L++ E +L A NS N VT +N + N N G + N +
Sbjct: 175 PSLT--EIHERLINRESKLLALNSAEVVPITANVVTHRNTNTNR-NQNNRGDNRNYNNNN 234
Query: 279 QSHGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVCYNRFNKEFTPNFNQ 338
+ SG N+ G CQ+C H+A C + T N Q
Sbjct: 235 NRSNSWQPSSSGSRSDNRQPKPYLG------RCQICSVQGHSAKRCPQLHQFQSTTNQQQ 294
Query: 339 N---------KNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTVDQSNELVTAGNGN 398
+ + + + N+ N N L + H + F + + V +G+
Sbjct: 295 STSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGS 354
Query: 399 TLQIASIANTFLTNGKYSLNLNNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDK 458
T+ I + L SL+LN +L+VP+I KNL+SV +L + +EF VKD
Sbjct: 355 TIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDL 414
Query: 459 GSRQTILKGILRDRLY 460
+ +L+G +D LY
Sbjct: 415 NTGVPLLQGKTKDELY 421
BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match:
A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)
HSP 1 Score: 233.4 bits (594), Expect = 2.0e-57
Identity = 168/436 (38.53%), Postives = 227/436 (52.06%), Query Frame = 0
Query: 94 ANASSNPPTVTRTPDFSSPPLNQLLNQITTIK-----------LALLILCGYQIEGYLLG 153
A ++ PP+++ + FS+PPLNQ+LNQ+TT+K LAL IL Y++EG+L
Sbjct: 4 AQPTAAPPSLS-SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 63
Query: 154 QKVCPP---ISQVATNDIVTHE------------TTEVINPVYEAWLIVDQLLLGWLYNS 213
+ CP +S ++N VT E T ++NP++E W+ D LLLGWLYNS
Sbjct: 64 ETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 123
Query: 214 MTPKVATQLMGFERSAS-WESRFD---------------------KGID---------IS 273
MTP VA QLMGF W++ D KG+D I
Sbjct: 124 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIVVIQ 183
Query: 274 RKPDITWLQMQSELLSYEKRLEAQNSQRNEV--TSKNPSVNMVNSRGAGPQQPQNPTSQS 333
KPDI+WL MQS+LL +EKRL+ QN+Q+ +++P++NM Q+ Q+ +
Sbjct: 184 GKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQS-NKKF 243
Query: 334 HGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVCYNRFNKEFTPNFNQNK 393
+G R +SGQ G N P CQ+CG H+A VCYNRFNKEF+ QN+
Sbjct: 244 YGYNRQHFSGQRGN----------LNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNR 303
Query: 394 NSASSNNFRNNNRKPLTAMVATHNENPFT------------------------SNYESTV 446
N SSN + N V+T N PF SN +
Sbjct: 304 NEHSSNGSVSPNP---AVFVSTQNATPFATPDTVVDPNWYIDSGATNHVTRECSNMTNPT 363
BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match:
A0A5D3BL83 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00070 PE=4 SV=1)
HSP 1 Score: 204.9 bits (520), Expect = 7.8e-49
Identity = 118/243 (48.56%), Postives = 153/243 (62.96%), Query Frame = 0
Query: 253 SVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNR--PACQVCGN 312
SVN V++RG+ PQ GC + G G N ++RG+G SR P C+VCG
Sbjct: 31 SVNKVSNRGSSNHTPQ-------GCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGK 90
Query: 313 VSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTV 372
+ HT D+CYNRFNK+F PN +N N ++NNFRNNN K TA V +H NPF E++V
Sbjct: 91 IGHTIDICYNRFNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSV 150
Query: 373 DQS--------NEL------------------VTAGNGNTLQIASIANTFLTNGKYSLNL 432
D + N + VT GNG+ L+I SI N+ L NG Y L+L
Sbjct: 151 DANWYANNRAMNHMTADYTNLANPVEYGGKVQVTIGNGDKLKITSIGNSTLMNGGYMLSL 210
Query: 433 NNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEA 468
+N+L+VP IAKNLVSVSK A+D + F+EFH++YCLVKD G+RQTILKG+L+D LYHLEEA
Sbjct: 211 DNVLYVPAIAKNLVSVSKRARDKHVFVEFHDDYCLVKDNGTRQTILKGMLKDDLYHLEEA 266
BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match:
A0A5A7UEH3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003510 PE=4 SV=1)
HSP 1 Score: 203.0 bits (515), Expect = 3.0e-48
Identity = 117/243 (48.15%), Postives = 153/243 (62.96%), Query Frame = 0
Query: 253 SVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNR--PACQVCGN 312
SVN V++RG+ PQ GC + G G N ++RG+G SR P C+VCG
Sbjct: 31 SVNKVSNRGSSNHTPQ-------GCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGK 90
Query: 313 VSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTV 372
+ HT D+CYNRFNK+F PN +N N ++NNFRNNN K TA V +H NPF E++V
Sbjct: 91 IGHTIDICYNRFNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSV 150
Query: 373 DQS--------NEL------------------VTAGNGNTLQIASIANTFLTNGKYSLNL 432
D + N + VT GNG+ L+I SI N+ L NG Y L+L
Sbjct: 151 DANWYANNRAMNHMTADYTNLANPVEYGGKVQVTIGNGDKLKITSIGNSTLMNGGYMLSL 210
Query: 433 NNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEA 468
+N+L+VP IAK+LVSVSK A+D + F+EFH++YCLVKD G+RQTILKG+L+D LYHLEEA
Sbjct: 211 DNVLYVPAIAKHLVSVSKRARDKHVFVEFHDDYCLVKDNGTRQTILKGMLKDDLYHLEEA 266
BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match:
A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 2.3e-45
Identity = 146/413 (35.35%), Postives = 199/413 (48.18%), Query Frame = 0
Query: 94 ANASSNPPTVTRTPDFSSPPLNQLLNQITTIK-----------LALLILCGYQIEGYLLG 153
A ++ PP+++ + FS+PPLNQ+LNQ+TT+K LAL IL Y++EG+L
Sbjct: 4 AQPTAAPPSLS-SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 63
Query: 154 QKVCPP---ISQVATNDIVTHE------------TTEVINPVYEAWLIVDQLLLGWLYNS 213
+ CP +S ++N VT E T ++NP++E W+ D LLLGWLYNS
Sbjct: 64 ETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 123
Query: 214 MTPKVATQLMGFERSAS-WESRFD---------------------KGID---------IS 273
MTP VA QLMGF W++ D KG+D I
Sbjct: 124 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIVVIQ 183
Query: 274 RKPDITWLQMQSELLSYEKRLEAQNSQRNEV--TSKNPSVNMVNSRGAGPQQPQNPTSQS 333
KPDI+WL MQS+LL +EKRL+ QN+Q+ +++P++NM Q+ Q+ +
Sbjct: 184 GKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQS-NKKF 243
Query: 334 HGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVC--GNVSHTADVCYNRFNKEFTPNFNQ 393
+G R +SGQ G N P CQ+C G +H C N N
Sbjct: 244 YGYNRQHFSGQRGN----------LNNGPTCQLCDSGATNHVTRECSNMTN--------- 303
Query: 394 NKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTVDQSNELVTAGNGNTLQIASIAN 446
T E VT GNGN L I+ + N
Sbjct: 304 -----------------------------------PTEYSGIEKVTVGNGNRLNISYVGN 360
BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match:
A0A803PEH4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 4.6e-41
Identity = 162/484 (33.47%), Postives = 230/484 (47.52%), Query Frame = 0
Query: 94 ANASSNPPTVTRTPD-FSSPPLNQLL------NQITTIK-LALLILCGYQIEGYLLGQKV 153
A++S+N ++ P+ F+ P LNQ N T K + I+ G+++ GYL G +
Sbjct: 24 ASSSNNTNQASQLPNAFAPPTLNQPFSLKLDRNNYTLWKTMVSTIVRGHRLHGYLSGTLM 83
Query: 154 CPPISQVATNDIVTHETTEVINPVYEAWLIVDQLLLGWLYNSMTPKVATQLMGFERSASW 213
CPP + V T+V NP YE W+I DQLL+GWLY+SMT +AT++MG +A+
Sbjct: 84 CPP-------EFVMVGDTQVTNPEYENWIITDQLLMGWLYSSMTEGIATEVMGSHSAANL 143
Query: 214 E------------SRFD----------KG------------------------------- 273
+ S+ D KG
Sbjct: 144 QRNLESLYGAYSKSKMDDTRTLIQTTRKGSTLMSEYLRQKKNWSNMLALAGDPYPEAHLV 203
Query: 274 ---------------IDISRKPDITWLQMQSELLSYEKRLEAQNS---QRNEVTSKNPSV 333
+ I + + TW ++Q LLS++ ++E + N+ TS +P
Sbjct: 204 ANVLFGLDAEYLSIVVQIEARSNTTWQELQDLLLSFDSKIERLQNLTLNSNKATSSSPQA 263
Query: 334 NMV-----NSRGAGPQQPQNPTSQSHGCGRSQYSGQHG-GNQFENRGQGM-SRNRPACQV 393
NM N RG G Q QN ++ S G +S G N+F RG+G S +RP CQV
Sbjct: 264 NMAAKTNNNGRGRG-FQSQNASTNSGGL----FSNSRGTSNRFRGRGRGPGSGSRPTCQV 323
Query: 394 CGNVSHTADVCYNRFNKEF---TPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTS 453
G HTA VCYNRF++ + PN N+N A N NN+ +A VAT F +
Sbjct: 324 YGKYGHTAAVCYNRFDESYMGSDPNNPHNQNKAGQTN--NNH----SAFVATPEVLEFDA 383
Query: 454 NYES-------TVDQSN----------ELVTAGNGNTLQIASIANTFLT--NGKYSLNLN 470
+ T D +N E V GNG+ L+I I N L +G Y L L
Sbjct: 384 WFADSGASNHITSDPANLTQKQDYNGKESVVVGNGSKLRITHIGNGKLNIESGNYLL-LK 443
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_016902197.1 | 4.2e-57 | 38.53 | PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo] | [more] |
TYJ99887.1 | 1.6e-48 | 48.56 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0051899.1 | 6.1e-48 | 48.15 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
XP_016902204.1 | 4.8e-45 | 35.35 | PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo] | [more] |
TYK05754.1 | 1.8e-39 | 41.61 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
Match Name | E-value | Identity | Description | |
Q94HW2 | 3.0e-05 | 26.60 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Q9ZT94 | 1.9e-04 | 25.00 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A1S4E1U6 | 2.0e-57 | 38.53 | uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A5D3BL83 | 7.8e-49 | 48.56 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7UEH3 | 3.0e-48 | 48.15 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A1S4E1U9 | 2.3e-45 | 35.35 | uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A803PEH4 | 4.6e-41 | 33.47 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |