CmUC01G010950 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G010950
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCmU531Chr01: 16704954 .. 16707124 (-)
RNA-Seq ExpressionCmUC01G010950
SyntenyCmUC01G010950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCGAGCCCTGGATGTTGCTCCTCCCCGTCTACCGCCGTCATGTAGTACCGCTCATCCTGGTTCCGTGTTAGTAAGCATCGCACCACCTATTATTTTTTCTTTTTCTCTAAGTCAGGTTTTTGTTTCAGTTTGATTTCTCTGATGTTTGTTCGCCGTTTAGCACAATTGTTTGTTCATCTCTAATTGCCACTGGTCTTAGATGTGGGTAAGTGTTAGAGAAGTTTTTGGATTTTACTGAATTATTTAGGATTACCTACTAATCTTTTGGCTTAAAAATTGTTTACCCTTAATCTTTTGGGTCTAGATTTGAGGCTTTGAGGTATTTAAGGCTGTTATCCATTAAGGAAAAAGAAGAGTCAAAGGTACAATCAGCTATGTCACGGTGTACAACCTTATACAGTCAGCTGAGCAAAAGATTCAAAGTCACCAATATTCTAGAAAAATCGGTTTGTTAGAATTTGGTTATAGATTTTTATTATTGTCCAATTATACATCAACATGTATATACCACTAAGATGATTTTATTTACCCTAATTGAGGGTGTGCGTGTTTAAAAAGGCTATGTGCCTCTCCCAATTCATTCAATATAGAGAAATGCTGAAATAGAAAGAATTCCGGCAGCTGTCTCGCTCTCTCGCTAGTCTGTGTGTCTTGCTAGTCTCGTTTCTTATTTCTCACTACTCTCGCTTCTTATTTTGGTATTAGAGCCGAATAGCTAACGCCTCTAGCAATCCTCCAACAGTCACCAGAACACCTGATTTCAGTAGCCCTCCATTGAACCAACTGCTGAACCAAATCACCACTATTAAGCTAGCTCTCCTCATCCTTTGTGGCTACCAAATTGAAGGCTATCTCCTAGGGCAAAAGGTTTGCCCACCCATGTTTGTCTAGCGAAACTCCAACAATGGAAGCATGCTACCAAAGCATCCAGCTCTCAAGTCGCAACCAACGACATTGTGACCCACGAGACAACCGAAGTCATCAATCCAGTGTATGAAGCATGGCTCATTGTTGACCAGCTGCTCCTGGGTTGGCTCTACAACTCCATGACACCTAAAGTGGCCACACAGCTCATGGGCTTTGAACGATCGTATGTTTGAATATTTACTACTGATGAAAATGCATTTTGATAATTTAGGGCAAGCTGGGAGTCCCGTTTTGACAAGGGCATTGATATCTCAAGTTCTACTCGGGCTCAATGAAGACTATAATGCCATCATTGCCACACTCTAAGGAAAGCCAGATATCACATGGCTACAAATGCAATCTGAGCTCCTGTCCTACGAAAAGAGGCTAGAAGCTCAAAATTCACAAAGAAACGAAGTCACAAGCAAAAATCCATCTGTGAACATGGTTAATAGCAGAGGAGCTGGACCTCAACAACCACAAAATCCGACATCACAAAGCCATGGATGTGGCAGAAGTCAATACAGTGGGCAACACGGAGGAAATCAATTCGAAAATAGAGGACAAGGTATGAGTAGAAATCGACCAGCTTGTCAAGTTTGTGGGAATGTTAGTCACACTGCAGATGTGTGTTACAATCGATTCAACAAGGAATTCACTCCCAACTTCAATCAGAACAAAAATAGCGCCAGTAGCAACAACTTCAGAAACAACAATAGGAAACCTCTTACTGCCATGGTTGCCACACATAATGAAAATCCCTTCACTTCGAATTATGAAAGCACAGTCGATCAAAGTTGATATGCTGATAGTGGAGCAATAAATCATGTGACCTCCGACTACAACAATCTCACAAACTCGACTGAATATGAAGGTAATGAGTTGGTAACTGCTGGCAATGGTAATACATTGCAGATTGCTTCTATTGCTAATACGTTTTTGACTAATGGAAAGTATTCATTGAATTTGAATAATATACTGCATGTTCCTGATATTGCTAAAAATCTTGTTAGTGTATCTAAATTGGCCAAGGATAGTAACGCTTTCATTGAATTTCACAATAACTATTGTCTTGTAAAGGACAAGGGTTCGAGGCAAACAATTTTGAAGGGCATACTTAGAGATAGGTTGTATCATCTAGAAGAAGCTATTGTGAAACCTAGTGTTGTTCCGGTGAGACTTGCTGCTGCTTGTGAATCCAAGATGGTTGTGAATATAAATAAATCCAAGATGGTTGTATCTAAAACTACTTGGCATTGA

mRNA sequence

ATGAGTCGAGCCCTGGATGTTGCTCCTCCCCGTCTACCGCCGTCATGTAGTACCGCTCATCCTGGTTCCGTGTTATTTGATTTCTCTGATGTTTGTTCGCCGTTTAGCACAATTGTTTGTTCATCTCTAATTGCCACTGGTCTTAGATGTGGGCTGTTATCCATTAAGGAAAAAGAAGAGTCAAAGGTACAATCAGCTATGTCACGGTGTACAACCTTATACAGTCAGCTGAGCAAAAGATTCAAAGTCACCAATATTCTAGAAAAATCGAGCCGAATAGCTAACGCCTCTAGCAATCCTCCAACAGTCACCAGAACACCTGATTTCAGTAGCCCTCCATTGAACCAACTGCTGAACCAAATCACCACTATTAAGCTAGCTCTCCTCATCCTTTGTGGCTACCAAATTGAAGGCTATCTCCTAGGGCAAAAGGTTTGCCCACCCATCTCTCAAGTCGCAACCAACGACATTGTGACCCACGAGACAACCGAAGTCATCAATCCAGTGTATGAAGCATGGCTCATTGTTGACCAGCTGCTCCTGGGTTGGCTCTACAACTCCATGACACCTAAAGTGGCCACACAGCTCATGGGCTTTGAACGATCGGCAAGCTGGGAGTCCCGTTTTGACAAGGGCATTGATATCTCAAGAAAGCCAGATATCACATGGCTACAAATGCAATCTGAGCTCCTGTCCTACGAAAAGAGGCTAGAAGCTCAAAATTCACAAAGAAACGAAGTCACAAGCAAAAATCCATCTGTGAACATGGTTAATAGCAGAGGAGCTGGACCTCAACAACCACAAAATCCGACATCACAAAGCCATGGATGTGGCAGAAGTCAATACAGTGGGCAACACGGAGGAAATCAATTCGAAAATAGAGGACAAGGTATGAGTAGAAATCGACCAGCTTGTCAAGTTTGTGGGAATGTTAGTCACACTGCAGATGTGTGTTACAATCGATTCAACAAGGAATTCACTCCCAACTTCAATCAGAACAAAAATAGCGCCAGTAGCAACAACTTCAGAAACAACAATAGGAAACCTCTTACTGCCATGGTTGCCACACATAATGAAAATCCCTTCACTTCGAATTATGAAAGCACAGTCGATCAAAGTAATGAGTTGGTAACTGCTGGCAATGGTAATACATTGCAGATTGCTTCTATTGCTAATACGTTTTTGACTAATGGAAAGTATTCATTGAATTTGAATAATATACTGCATGTTCCTGATATTGCTAAAAATCTTGTTAGTGTATCTAAATTGGCCAAGGATAGTAACGCTTTCATTGAATTTCACAATAACTATTGTCTTGTAAAGGACAAGGGTTCGAGGCAAACAATTTTGAAGGGCATACTTAGAGATAGGTTGTATCATCTAGAAGAAGCTATTGTGAAACCTAGTGTTGTTCCGGTGAGACTTGCTGCTGCTTGTGAATCCAAGATGGTTGTGAATATAAATAAATCCAAGATGGTTGTATCTAAAACTACTTGGCATTGA

Coding sequence (CDS)

ATGAGTCGAGCCCTGGATGTTGCTCCTCCCCGTCTACCGCCGTCATGTAGTACCGCTCATCCTGGTTCCGTGTTATTTGATTTCTCTGATGTTTGTTCGCCGTTTAGCACAATTGTTTGTTCATCTCTAATTGCCACTGGTCTTAGATGTGGGCTGTTATCCATTAAGGAAAAAGAAGAGTCAAAGGTACAATCAGCTATGTCACGGTGTACAACCTTATACAGTCAGCTGAGCAAAAGATTCAAAGTCACCAATATTCTAGAAAAATCGAGCCGAATAGCTAACGCCTCTAGCAATCCTCCAACAGTCACCAGAACACCTGATTTCAGTAGCCCTCCATTGAACCAACTGCTGAACCAAATCACCACTATTAAGCTAGCTCTCCTCATCCTTTGTGGCTACCAAATTGAAGGCTATCTCCTAGGGCAAAAGGTTTGCCCACCCATCTCTCAAGTCGCAACCAACGACATTGTGACCCACGAGACAACCGAAGTCATCAATCCAGTGTATGAAGCATGGCTCATTGTTGACCAGCTGCTCCTGGGTTGGCTCTACAACTCCATGACACCTAAAGTGGCCACACAGCTCATGGGCTTTGAACGATCGGCAAGCTGGGAGTCCCGTTTTGACAAGGGCATTGATATCTCAAGAAAGCCAGATATCACATGGCTACAAATGCAATCTGAGCTCCTGTCCTACGAAAAGAGGCTAGAAGCTCAAAATTCACAAAGAAACGAAGTCACAAGCAAAAATCCATCTGTGAACATGGTTAATAGCAGAGGAGCTGGACCTCAACAACCACAAAATCCGACATCACAAAGCCATGGATGTGGCAGAAGTCAATACAGTGGGCAACACGGAGGAAATCAATTCGAAAATAGAGGACAAGGTATGAGTAGAAATCGACCAGCTTGTCAAGTTTGTGGGAATGTTAGTCACACTGCAGATGTGTGTTACAATCGATTCAACAAGGAATTCACTCCCAACTTCAATCAGAACAAAAATAGCGCCAGTAGCAACAACTTCAGAAACAACAATAGGAAACCTCTTACTGCCATGGTTGCCACACATAATGAAAATCCCTTCACTTCGAATTATGAAAGCACAGTCGATCAAAGTAATGAGTTGGTAACTGCTGGCAATGGTAATACATTGCAGATTGCTTCTATTGCTAATACGTTTTTGACTAATGGAAAGTATTCATTGAATTTGAATAATATACTGCATGTTCCTGATATTGCTAAAAATCTTGTTAGTGTATCTAAATTGGCCAAGGATAGTAACGCTTTCATTGAATTTCACAATAACTATTGTCTTGTAAAGGACAAGGGTTCGAGGCAAACAATTTTGAAGGGCATACTTAGAGATAGGTTGTATCATCTAGAAGAAGCTATTGTGAAACCTAGTGTTGTTCCGGTGAGACTTGCTGCTGCTTGTGAATCCAAGATGGTTGTGAATATAAATAAATCCAAGATGGTTGTATCTAAAACTACTTGGCATTGA

Protein sequence

MSRALDVAPPRLPPSCSTAHPGSVLFDFSDVCSPFSTIVCSSLIATGLRCGLLSIKEKEESKVQSAMSRCTTLYSQLSKRFKVTNILEKSSRIANASSNPPTVTRTPDFSSPPLNQLLNQITTIKLALLILCGYQIEGYLLGQKVCPPISQVATNDIVTHETTEVINPVYEAWLIVDQLLLGWLYNSMTPKVATQLMGFERSASWESRFDKGIDISRKPDITWLQMQSELLSYEKRLEAQNSQRNEVTSKNPSVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTVDQSNELVTAGNGNTLQIASIANTFLTNGKYSLNLNNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEAIVKPSVVPVRLAAACESKMVVNINKSKMVVSKTTWH
Homology
BLAST of CmUC01G010950 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 4.2e-57
Identity = 168/436 (38.53%), Postives = 227/436 (52.06%), Query Frame = 0

Query: 94  ANASSNPPTVTRTPDFSSPPLNQLLNQITTIK-----------LALLILCGYQIEGYLLG 153
           A  ++ PP+++ +  FS+PPLNQ+LNQ+TT+K           LAL IL  Y++EG+L  
Sbjct: 4   AQPTAAPPSLS-SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 63

Query: 154 QKVCPP---ISQVATNDIVTHE------------TTEVINPVYEAWLIVDQLLLGWLYNS 213
           +  CP    +S  ++N  VT E            T  ++NP++E W+  D LLLGWLYNS
Sbjct: 64  ETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 123

Query: 214 MTPKVATQLMGFERSAS-WESRFD---------------------KGID---------IS 273
           MTP VA QLMGF      W++  D                     KG+D         I 
Sbjct: 124 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIVVIQ 183

Query: 274 RKPDITWLQMQSELLSYEKRLEAQNSQRNEV--TSKNPSVNMVNSRGAGPQQPQNPTSQS 333
            KPDI+WL MQS+LL +EKRL+ QN+Q+      +++P++NM        Q+ Q+   + 
Sbjct: 184 GKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQS-NKKF 243

Query: 334 HGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVCYNRFNKEFTPNFNQNK 393
           +G  R  +SGQ G             N P CQ+CG   H+A VCYNRFNKEF+    QN+
Sbjct: 244 YGYNRQHFSGQRGN----------LNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNR 303

Query: 394 NSASSNNFRNNNRKPLTAMVATHNENPFT------------------------SNYESTV 446
           N  SSN   + N       V+T N  PF                         SN  +  
Sbjct: 304 NEHSSNGSVSPNP---AVFVSTQNATPFATPDTVVDPNWYIDSGATNHVTRECSNMTNPT 363

BLAST of CmUC01G010950 vs. NCBI nr
Match: TYJ99887.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 204.9 bits (520), Expect = 1.6e-48
Identity = 118/243 (48.56%), Postives = 153/243 (62.96%), Query Frame = 0

Query: 253 SVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNR--PACQVCGN 312
           SVN V++RG+    PQ       GC  +   G  G N  ++RG+G SR    P C+VCG 
Sbjct: 31  SVNKVSNRGSSNHTPQ-------GCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGK 90

Query: 313 VSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTV 372
           + HT D+CYNRFNK+F PN  +N N  ++NNFRNNN K  TA V +H  NPF    E++V
Sbjct: 91  IGHTIDICYNRFNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSV 150

Query: 373 DQS--------NEL------------------VTAGNGNTLQIASIANTFLTNGKYSLNL 432
           D +        N +                  VT GNG+ L+I SI N+ L NG Y L+L
Sbjct: 151 DANWYANNRAMNHMTADYTNLANPVEYGGKVQVTIGNGDKLKITSIGNSTLMNGGYMLSL 210

Query: 433 NNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEA 468
           +N+L+VP IAKNLVSVSK A+D + F+EFH++YCLVKD G+RQTILKG+L+D LYHLEEA
Sbjct: 211 DNVLYVPAIAKNLVSVSKRARDKHVFVEFHDDYCLVKDNGTRQTILKGMLKDDLYHLEEA 266

BLAST of CmUC01G010950 vs. NCBI nr
Match: KAA0051899.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 6.1e-48
Identity = 117/243 (48.15%), Postives = 153/243 (62.96%), Query Frame = 0

Query: 253 SVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNR--PACQVCGN 312
           SVN V++RG+    PQ       GC  +   G  G N  ++RG+G SR    P C+VCG 
Sbjct: 31  SVNKVSNRGSSNHTPQ-------GCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGK 90

Query: 313 VSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTV 372
           + HT D+CYNRFNK+F PN  +N N  ++NNFRNNN K  TA V +H  NPF    E++V
Sbjct: 91  IGHTIDICYNRFNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSV 150

Query: 373 DQS--------NEL------------------VTAGNGNTLQIASIANTFLTNGKYSLNL 432
           D +        N +                  VT GNG+ L+I SI N+ L NG Y L+L
Sbjct: 151 DANWYANNRAMNHMTADYTNLANPVEYGGKVQVTIGNGDKLKITSIGNSTLMNGGYMLSL 210

Query: 433 NNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEA 468
           +N+L+VP IAK+LVSVSK A+D + F+EFH++YCLVKD G+RQTILKG+L+D LYHLEEA
Sbjct: 211 DNVLYVPAIAKHLVSVSKRARDKHVFVEFHDDYCLVKDNGTRQTILKGMLKDDLYHLEEA 266

BLAST of CmUC01G010950 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 4.8e-45
Identity = 146/413 (35.35%), Postives = 199/413 (48.18%), Query Frame = 0

Query: 94  ANASSNPPTVTRTPDFSSPPLNQLLNQITTIK-----------LALLILCGYQIEGYLLG 153
           A  ++ PP+++ +  FS+PPLNQ+LNQ+TT+K           LAL IL  Y++EG+L  
Sbjct: 4   AQPTAAPPSLS-SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 63

Query: 154 QKVCPP---ISQVATNDIVTHE------------TTEVINPVYEAWLIVDQLLLGWLYNS 213
           +  CP    +S  ++N  VT E            T  ++NP++E W+  D LLLGWLYNS
Sbjct: 64  ETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 123

Query: 214 MTPKVATQLMGFERSAS-WESRFD---------------------KGID---------IS 273
           MTP VA QLMGF      W++  D                     KG+D         I 
Sbjct: 124 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIVVIQ 183

Query: 274 RKPDITWLQMQSELLSYEKRLEAQNSQRNEV--TSKNPSVNMVNSRGAGPQQPQNPTSQS 333
            KPDI+WL MQS+LL +EKRL+ QN+Q+      +++P++NM        Q+ Q+   + 
Sbjct: 184 GKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQS-NKKF 243

Query: 334 HGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVC--GNVSHTADVCYNRFNKEFTPNFNQ 393
           +G  R  +SGQ G             N P CQ+C  G  +H    C N  N         
Sbjct: 244 YGYNRQHFSGQRGN----------LNNGPTCQLCDSGATNHVTRECSNMTN--------- 303

Query: 394 NKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTVDQSNELVTAGNGNTLQIASIAN 446
                                               T     E VT GNGN L I+ + N
Sbjct: 304 -----------------------------------PTEYSGIEKVTVGNGNRLNISYVGN 360

BLAST of CmUC01G010950 vs. NCBI nr
Match: TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 1.8e-39
Identity = 114/274 (41.61%), Postives = 158/274 (57.66%), Query Frame = 0

Query: 215 ISRKPDITWLQMQSELLSYEKRLEAQNSQRNEVTSKNPSVNMVNSRGAGPQQPQNPTSQS 274
           I  KP+I+W+ MQSELL++EKRLE Q++Q+N        VN+  +R +   +  +   Q 
Sbjct: 136 IQGKPEISWIDMQSELLTFEKRLEHQDTQKNTENIIQNVVNIAQNRNSSDFRKYS-NHQF 195

Query: 275 HGCGRSQYSGQHGGNQFENRGQGMSR-NRPACQVCGNVSHTADVCYNRFNKEFTPNFNQN 334
           HG  R+   GQ GG     RG+G  R N+P CQVC    H+A VCYNRFNKEF     Q+
Sbjct: 196 HGNNRNNSQGQRGGFNI-GRGRGKGRGNKPTCQVCEKYGHSALVCYNRFNKEFLSPLVQD 255

Query: 335 KNSASSNNFRNNNRKPLTAMVATHNENPFT---------------SNYESTVDQSN---- 394
           + + SSN  +++N   LT +V   + N F                +    TV+ SN    
Sbjct: 256 RGAQSSNFSKHSN---LTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSNLSNP 315

Query: 395 ------ELVTAGNGNTLQIASIANTFLTNGKYSLNLNNILHVPDIAKNLVSVSKLAKDSN 454
                 E +  GNG++L I+ I N +LT+G   LNL N+L VPDI KNLVSVSKLA+D+N
Sbjct: 316 SEYSGIEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNN 375

Query: 455 AFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLE 463
            +IEFH  YC +KDK + +T+L   ++D LYHL+
Sbjct: 376 VYIEFHGCYCFIKDKDTGRTLLNRTIKDGLYHLD 404

BLAST of CmUC01G010950 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-05
Identity = 75/282 (26.60%), Postives = 122/282 (43.26%), Query Frame = 0

Query: 222 TWLQMQSELLSYEKRLEAQNS------QRNEVTSKNPSVNMVNSRGAGPQQPQNPTSQSH 281
           T  ++   LL++E ++ A +S        N V+ +N +    N+ G      +N    + 
Sbjct: 195 TLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNG-----NRNNRYDNR 254

Query: 282 GCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVC------YNRFNKE---- 341
               +    Q     F             CQ+CG   H+A  C       +  N +    
Sbjct: 255 NNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPS 314

Query: 342 -FTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYES-TVDQ---SNELVTAG 401
            FTP +    N A  + + +NN   L    ATH+    TS++ + ++ Q     + V   
Sbjct: 315 PFTP-WQPRANLALGSPYSSNNW--LLDSGATHH---ITSDFNNLSLHQPYTGGDDVMVA 374

Query: 402 NGNTLQIASIANTFLTNGKYSLNLNNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLV 461
           +G+T+ I+   +T L+     LNL+NIL+VP+I KNL+SV +L   +   +EF      V
Sbjct: 375 DGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQV 434

Query: 462 KDKGSRQTILKGILRDRLYHLEEAIVKPSVVPVRLAAACESK 483
           KD  +   +L+G  +D LY    A    S  PV L A+  SK
Sbjct: 435 KDLNTGVPLLQGKTKDELYEWPIA----SSQPVSLFASPSSK 461

BLAST of CmUC01G010950 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-04
Identity = 64/256 (25.00%), Postives = 104/256 (40.62%), Query Frame = 0

Query: 219 PDITWLQMQSELLSYEKRLEAQNSQR------NEVTSKNPSVNMVNSRGAGPQQPQNPTS 278
           P +T  ++   L++ E +L A NS        N VT +N + N  N    G  +  N  +
Sbjct: 175 PSLT--EIHERLINRESKLLALNSAEVVPITANVVTHRNTNTNR-NQNNRGDNRNYNNNN 234

Query: 279 QSHGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVCYNRFNKEFTPNFNQ 338
                 +   SG    N+      G       CQ+C    H+A  C      + T N  Q
Sbjct: 235 NRSNSWQPSSSGSRSDNRQPKPYLG------RCQICSVQGHSAKRCPQLHQFQSTTNQQQ 294

Query: 339 N---------KNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTVDQSNELVTAGNGN 398
           +         + + + N+  N N   L +    H  + F +          + V   +G+
Sbjct: 295 STSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGS 354

Query: 399 TLQIASIANTFLTNGKYSLNLNNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDK 458
           T+ I    +  L     SL+LN +L+VP+I KNL+SV +L   +   +EF      VKD 
Sbjct: 355 TIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDL 414

Query: 459 GSRQTILKGILRDRLY 460
            +   +L+G  +D LY
Sbjct: 415 NTGVPLLQGKTKDELY 421

BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.0e-57
Identity = 168/436 (38.53%), Postives = 227/436 (52.06%), Query Frame = 0

Query: 94  ANASSNPPTVTRTPDFSSPPLNQLLNQITTIK-----------LALLILCGYQIEGYLLG 153
           A  ++ PP+++ +  FS+PPLNQ+LNQ+TT+K           LAL IL  Y++EG+L  
Sbjct: 4   AQPTAAPPSLS-SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 63

Query: 154 QKVCPP---ISQVATNDIVTHE------------TTEVINPVYEAWLIVDQLLLGWLYNS 213
           +  CP    +S  ++N  VT E            T  ++NP++E W+  D LLLGWLYNS
Sbjct: 64  ETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 123

Query: 214 MTPKVATQLMGFERSAS-WESRFD---------------------KGID---------IS 273
           MTP VA QLMGF      W++  D                     KG+D         I 
Sbjct: 124 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIVVIQ 183

Query: 274 RKPDITWLQMQSELLSYEKRLEAQNSQRNEV--TSKNPSVNMVNSRGAGPQQPQNPTSQS 333
            KPDI+WL MQS+LL +EKRL+ QN+Q+      +++P++NM        Q+ Q+   + 
Sbjct: 184 GKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQS-NKKF 243

Query: 334 HGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVCGNVSHTADVCYNRFNKEFTPNFNQNK 393
           +G  R  +SGQ G             N P CQ+CG   H+A VCYNRFNKEF+    QN+
Sbjct: 244 YGYNRQHFSGQRGN----------LNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNR 303

Query: 394 NSASSNNFRNNNRKPLTAMVATHNENPFT------------------------SNYESTV 446
           N  SSN   + N       V+T N  PF                         SN  +  
Sbjct: 304 NEHSSNGSVSPNP---AVFVSTQNATPFATPDTVVDPNWYIDSGATNHVTRECSNMTNPT 363

BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match: A0A5D3BL83 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00070 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.8e-49
Identity = 118/243 (48.56%), Postives = 153/243 (62.96%), Query Frame = 0

Query: 253 SVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNR--PACQVCGN 312
           SVN V++RG+    PQ       GC  +   G  G N  ++RG+G SR    P C+VCG 
Sbjct: 31  SVNKVSNRGSSNHTPQ-------GCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGK 90

Query: 313 VSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTV 372
           + HT D+CYNRFNK+F PN  +N N  ++NNFRNNN K  TA V +H  NPF    E++V
Sbjct: 91  IGHTIDICYNRFNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSV 150

Query: 373 DQS--------NEL------------------VTAGNGNTLQIASIANTFLTNGKYSLNL 432
           D +        N +                  VT GNG+ L+I SI N+ L NG Y L+L
Sbjct: 151 DANWYANNRAMNHMTADYTNLANPVEYGGKVQVTIGNGDKLKITSIGNSTLMNGGYMLSL 210

Query: 433 NNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEA 468
           +N+L+VP IAKNLVSVSK A+D + F+EFH++YCLVKD G+RQTILKG+L+D LYHLEEA
Sbjct: 211 DNVLYVPAIAKNLVSVSKRARDKHVFVEFHDDYCLVKDNGTRQTILKGMLKDDLYHLEEA 266

BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match: A0A5A7UEH3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003510 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-48
Identity = 117/243 (48.15%), Postives = 153/243 (62.96%), Query Frame = 0

Query: 253 SVNMVNSRGAGPQQPQNPTSQSHGCGRSQYSGQHGGNQFENRGQGMSRNR--PACQVCGN 312
           SVN V++RG+    PQ       GC  +   G  G N  ++RG+G SR    P C+VCG 
Sbjct: 31  SVNKVSNRGSSNHTPQ-------GCRNNLSYGNCGNNGGQSRGRGRSRGPFCPTCEVCGK 90

Query: 313 VSHTADVCYNRFNKEFTPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTV 372
           + HT D+CYNRFNK+F PN  +N N  ++NNFRNNN K  TA V +H  NPF    E++V
Sbjct: 91  IGHTIDICYNRFNKKFVPNSGKNSNKGTTNNFRNNNDKLSTAFVTSHPANPFNVTRENSV 150

Query: 373 DQS--------NEL------------------VTAGNGNTLQIASIANTFLTNGKYSLNL 432
           D +        N +                  VT GNG+ L+I SI N+ L NG Y L+L
Sbjct: 151 DANWYANNRAMNHMTADYTNLANPVEYGGKVQVTIGNGDKLKITSIGNSTLMNGGYMLSL 210

Query: 433 NNILHVPDIAKNLVSVSKLAKDSNAFIEFHNNYCLVKDKGSRQTILKGILRDRLYHLEEA 468
           +N+L+VP IAK+LVSVSK A+D + F+EFH++YCLVKD G+RQTILKG+L+D LYHLEEA
Sbjct: 211 DNVLYVPAIAKHLVSVSKRARDKHVFVEFHDDYCLVKDNGTRQTILKGMLKDDLYHLEEA 266

BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.3e-45
Identity = 146/413 (35.35%), Postives = 199/413 (48.18%), Query Frame = 0

Query: 94  ANASSNPPTVTRTPDFSSPPLNQLLNQITTIK-----------LALLILCGYQIEGYLLG 153
           A  ++ PP+++ +  FS+PPLNQ+LNQ+TT+K           LAL IL  Y++EG+L  
Sbjct: 4   AQPTAAPPSLS-SAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTA 63

Query: 154 QKVCPP---ISQVATNDIVTHE------------TTEVINPVYEAWLIVDQLLLGWLYNS 213
           +  CP    +S  ++N  VT E            T  ++NP++E W+  D LLLGWLYNS
Sbjct: 64  ETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNS 123

Query: 214 MTPKVATQLMGFERSAS-WESRFD---------------------KGID---------IS 273
           MTP VA QLMGF      W++  D                     KG+D         I 
Sbjct: 124 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIVVIQ 183

Query: 274 RKPDITWLQMQSELLSYEKRLEAQNSQRNEV--TSKNPSVNMVNSRGAGPQQPQNPTSQS 333
            KPDI+WL MQS+LL +EKRL+ QN+Q+      +++P++NM        Q+ Q+   + 
Sbjct: 184 GKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQS-NKKF 243

Query: 334 HGCGRSQYSGQHGGNQFENRGQGMSRNRPACQVC--GNVSHTADVCYNRFNKEFTPNFNQ 393
           +G  R  +SGQ G             N P CQ+C  G  +H    C N  N         
Sbjct: 244 YGYNRQHFSGQRGN----------LNNGPTCQLCDSGATNHVTRECSNMTN--------- 303

Query: 394 NKNSASSNNFRNNNRKPLTAMVATHNENPFTSNYESTVDQSNELVTAGNGNTLQIASIAN 446
                                               T     E VT GNGN L I+ + N
Sbjct: 304 -----------------------------------PTEYSGIEKVTVGNGNRLNISYVGN 360

BLAST of CmUC01G010950 vs. ExPASy TrEMBL
Match: A0A803PEH4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-41
Identity = 162/484 (33.47%), Postives = 230/484 (47.52%), Query Frame = 0

Query: 94  ANASSNPPTVTRTPD-FSSPPLNQLL------NQITTIK-LALLILCGYQIEGYLLGQKV 153
           A++S+N    ++ P+ F+ P LNQ        N  T  K +   I+ G+++ GYL G  +
Sbjct: 24  ASSSNNTNQASQLPNAFAPPTLNQPFSLKLDRNNYTLWKTMVSTIVRGHRLHGYLSGTLM 83

Query: 154 CPPISQVATNDIVTHETTEVINPVYEAWLIVDQLLLGWLYNSMTPKVATQLMGFERSASW 213
           CPP       + V    T+V NP YE W+I DQLL+GWLY+SMT  +AT++MG   +A+ 
Sbjct: 84  CPP-------EFVMVGDTQVTNPEYENWIITDQLLMGWLYSSMTEGIATEVMGSHSAANL 143

Query: 214 E------------SRFD----------KG------------------------------- 273
           +            S+ D          KG                               
Sbjct: 144 QRNLESLYGAYSKSKMDDTRTLIQTTRKGSTLMSEYLRQKKNWSNMLALAGDPYPEAHLV 203

Query: 274 ---------------IDISRKPDITWLQMQSELLSYEKRLEAQNS---QRNEVTSKNPSV 333
                          + I  + + TW ++Q  LLS++ ++E   +     N+ TS +P  
Sbjct: 204 ANVLFGLDAEYLSIVVQIEARSNTTWQELQDLLLSFDSKIERLQNLTLNSNKATSSSPQA 263

Query: 334 NMV-----NSRGAGPQQPQNPTSQSHGCGRSQYSGQHG-GNQFENRGQGM-SRNRPACQV 393
           NM      N RG G  Q QN ++ S G     +S   G  N+F  RG+G  S +RP CQV
Sbjct: 264 NMAAKTNNNGRGRG-FQSQNASTNSGGL----FSNSRGTSNRFRGRGRGPGSGSRPTCQV 323

Query: 394 CGNVSHTADVCYNRFNKEF---TPNFNQNKNSASSNNFRNNNRKPLTAMVATHNENPFTS 453
            G   HTA VCYNRF++ +    PN   N+N A   N  NN+    +A VAT     F +
Sbjct: 324 YGKYGHTAAVCYNRFDESYMGSDPNNPHNQNKAGQTN--NNH----SAFVATPEVLEFDA 383

Query: 454 NYES-------TVDQSN----------ELVTAGNGNTLQIASIANTFLT--NGKYSLNLN 470
            +         T D +N          E V  GNG+ L+I  I N  L   +G Y L L 
Sbjct: 384 WFADSGASNHITSDPANLTQKQDYNGKESVVVGNGSKLRITHIGNGKLNIESGNYLL-LK 443

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016902197.14.2e-5738.53PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
TYJ99887.11.6e-4848.56Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0051899.16.1e-4848.15Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_016902204.14.8e-4535.35PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo][more]
TYK05754.11.8e-3941.61Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
Q94HW23.0e-0526.60Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.9e-0425.00Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A1S4E1U62.0e-5738.53uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5D3BL837.8e-4948.56Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7UEH33.0e-4848.15Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A1S4E1U92.3e-4535.35uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A803PEH44.6e-4133.47Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 230..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..298
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 127..204
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 127..204
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 228..404
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 228..404

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G010950.1CmUC01G010950.1mRNA