CmUC01G009970 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G009970
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr01: 13514380 .. 13515147 (+)
RNA-Seq ExpressionCmUC01G009970
SyntenyCmUC01G009970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTCTTTGTTGGCTGGTGCCTTAACAGGTAAGGGTCCTACCAAACTCTTGGCCCACTCCAGCCATTTGCTCTGTTGACTGAGCTAGCTAAGCTTACTATTTTATTCTCTCAATCCCTTTTCTTCTTCTTTATACATAATGATGTTATCCAATTTGAAGCAGATATCTTTCTTTATTTTGGAAGCAGTAAACAAATTACTGTTTCCTATGTTCTTAGCTATGATGGATTTGACTTGACCTAATATTATTAGTCTACTGGTGGAGTGGTGAGAATCAAATAGATGATCAGAACTTTTGGGCAAATTATGGGTTTCCTTTTTCCCTGCCTAACCCTTTTGTATCCTAGCTGGTTTCATGATGAAATTAGTGACCAGTGCAGTATCTAATCATGAAAGCTGTACAAATCTGTGAGAGGGGGCCTTGTATCTTATATTTAAGATTTAAAGAACAAATAGCAGAAAGATTATTAGCCTCCCCGGTCTAATCAACCAGCCTTAAGGAGATGGTTTACTAACGTTTTAGGACAACGACATTCTTAACGTTGAAGCAAGAACTAAGCAGATGGTGGATACTTCTTCCCTGCTGTTTTATCAACAGGATATCCCAGAGAAGAGATGCACATTAATGGCTCACGGAGCTAAGTTGGGGGTTTATGTTCCCTAA

mRNA sequence

ATGCCTATTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTCTTTGTTGGCTGGTGCCTTAACAGGTAAGGTCTACTGGTGGAGTGGTGAGAATCAAATAGATGATCAGAACTTTTGGGCAAATTATGGGTTTCCTTTTTCCCTGCCTAACCCTTTTGACAACGACATTCTTAACGTTGAAGCAAGAACTAAGCAGATGGTGGATACTTCTTCCCTGCTGTTTTATCAACAGGATATCCCAGAGAAGAGATGCACATTAATGGCTCACGGAGCTAAGTTGGGGGTTTATGTTCCCTAA

Coding sequence (CDS)

ATGCCTATTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTCTTTGTTGGCTGGTGCCTTAACAGGTAAGGTCTACTGGTGGAGTGGTGAGAATCAAATAGATGATCAGAACTTTTGGGCAAATTATGGGTTTCCTTTTTCCCTGCCTAACCCTTTTGACAACGACATTCTTAACGTTGAAGCAAGAACTAAGCAGATGGTGGATACTTCTTCCCTGCTGTTTTATCAACAGGATATCCCAGAGAAGAGATGCACATTAATGGCTCACGGAGCTAAGTTGGGGGTTTATGTTCCCTAA

Protein sequence

MPILVMLNPPCNCGSKARASVVKHVLCSLIKAGIRLSLLAGALTGKVYWWSGENQIDDQNFWANYGFPFSLPNPFDNDILNVEARTKQMVDTSSLLFYQQDIPEKRCTLMAHGAKLGVYVP
Homology
[Close]
BLAST of CmUC01G009970 vs. NCBI nr
Match: KGN66828.1 (hypothetical protein Csa_006838 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 6  MLNPPCNCGSKARASVVKHVLCSLIKAGIRLSLLAGALT 45
          MLNPPCNCGSK RASVVKHVLCSLIKA IRL LLAGALT
Sbjct: 1  MLNPPCNCGSKPRASVVKHVLCSLIKARIRLYLLAGALT 39

[Close]
BLAST of CmUC01G009970 vs. ExPASy TrEMBL
Match: A0A0A0LYG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699570 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.5e-10
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 6  MLNPPCNCGSKARASVVKHVLCSLIKAGIRLSLLAGALT 45
          MLNPPCNCGSK RASVVKHVLCSLIKA IRL LLAGALT
Sbjct: 1  MLNPPCNCGSKPRASVVKHVLCSLIKARIRLYLLAGALT 39

The following BLAST results are available for this feature:
BLAST of CmUC01G009970 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66828.11.8e-0992.31hypothetical protein Csa_006838 [Cucumis sativus][more]
BLAST of CmUC01G009970 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC01G009970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYG48.5e-1092.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699570 PE=4 SV=1[more]
BLAST of CmUC01G009970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G009970.1CmUC01G009970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane