CmUC01G005900 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G005900
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr01: 6145599 .. 6145925 (+)
RNA-Seq ExpressionCmUC01G005900
SyntenyCmUC01G005900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGCCAGCCGTCAAGGCAGTCCTTGTGGAAGACGTGGCGGCAGGGAAGGCGGCGGACGAGGTGGCCGGCGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCAGAATCGTGGTCGGAGTGAGCGTAGCGGTGGGAGAGGAGGCGATTGAGATGAAGGTGATGGGGGAGAGGGGAAATATCAGGGAGAGGGAGACGGTGGTCGGCGGAGGGAGGGGCGGCGGAGAGGAAAGAGCGGAGAAGGGAGACGAAATTGGCGAGGAGAGAGAGAAAGAAGAGAGGGAGAGAGTGGTAGGAGAAATCGTTGAGTTGGCTCTGTAA

mRNA sequence

ATGGTGAAGCCAGCCGTCAAGGCAGTCCTTGTGGAAGACGTGGCGGCAGGGAAGGCGGCGGACGAGGTGGCCGGCGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCAGAATCGTGGTCGGAGTGAGCGTAGCGGTGGGAGAGGAGGCGATTGAGATGAAGGTGATGGGGGAGAGGGGAAATATCAGGGAGAGGGAGACGGTGGTCGGCGGAGGGAGGGGCGGCGGAGAGGAAAGAGCGGAGAAGGGAGACGAAATTGGCGAGGAGAGAGAGAAAGAAGAGAGGGAGAGAGTGGTAGGAGAAATCGTTGAGTTGGCTCTGTAA

Coding sequence (CDS)

ATGGTGAAGCCAGCCGTCAAGGCAGTCCTTGTGGAAGACGTGGCGGCAGGGAAGGCGGCGGACGAGGTGGCCGGCGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCAGAATCGTGGTCGGAGTGAGCGTAGCGGTGGGAGAGGAGGCGATTGAGATGAAGGTGATGGGGGAGAGGGGAAATATCAGGGAGAGGGAGACGGTGGTCGGCGGAGGGAGGGGCGGCGGAGAGGAAAGAGCGGAGAAGGGAGACGAAATTGGCGAGGAGAGAGAGAAAGAAGAGAGGGAGAGAGTGGTAGGAGAAATCGTTGAGTTGGCTCTGTAA

Protein sequence

MVKPAVKAVLVEDVAAGKAADEVAGGERGETDDAVGGRIVVGVSVAVGEEAIEMKVMGERGNIRERETVVGGGRGGGEERAEKGDEIGEEREKEERERVVGEIVELAL
Homology
BLAST of CmUC01G005900 vs. NCBI nr
Match: KAG6579228.1 (hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 5.4e-26
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 0

Query: 1   MVKPAVKAVLVEDVAAGKAADEVAGGERGETDDAVGGRIVVGVSVAVGEEAIEMKVMGER 60
           M++  V+AVLVEDVAA KAADEVAGGERGETDDAVGG I VGV VAV EEAIE+KV+GER
Sbjct: 1   MMEAGVEAVLVEDVAARKAADEVAGGERGETDDAVGGGI-VGVRVAVREEAIEVKVVGER 60

Query: 61  GNIRERETVVGGGRGGGEERAEKGDEIGEEREKEERERVVGEIVELAL 109
           GNI   E VVG  R GGE+ AEKG+EIGEERE+EERER+ GE+VELAL
Sbjct: 61  GNI--GEAVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL 105

BLAST of CmUC01G005900 vs. NCBI nr
Match: KGN51526.1 (hypothetical protein Csa_008164 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 7.3e-23
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 0

Query: 1   MVKPAVKAVLVEDVAAGKAADEVAGGERGETDDAVGGRI-VVGVSVAVGEEAIEMKVMGE 60
           MVKPAV+AV +E+VAAG+ ADEV G ERGETDDA+GG + VVGV V VGE+AIEM+++G+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIRERETVVGGGRGGGEERAEKGDEIGEEREKEERERVVGEIVELAL 109
           RG IR   TVVGGG  GG   AE+ +EIG+ERE+EERER+VGE++EL +
Sbjct: 91  RGEIR---TVVGGGEEGG---AEEREEIGKEREEEERERMVGEVIELCV 133

BLAST of CmUC01G005900 vs. NCBI nr
Match: KAG6601827.1 (hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 60/98 (61.22%), Postives = 72/98 (73.47%), Query Frame = 0

Query: 1  MVKPAVKAVLVEDVAAGKAADEVAGGERGETDDAVGGRIVVGVSVAVGEEAIEMKVMGER 60
          M+KP ++AVLVEDV A + AD V  GE  E DD VGG   +GV VAVGE+AIEMK++ ER
Sbjct: 1  MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGG-GIGV-VAVGEKAIEMKMLVER 60

Query: 61 GNIRERETVVGGGRGGGEER-AEKGDEIGEEREKEERE 98
          GNI      +G   GGGEER AE+G+EIGEERE+EERE
Sbjct: 61 GNIG-----IGRRSGGGEERTAEEGEEIGEEREEEERE 91

BLAST of CmUC01G005900 vs. ExPASy TrEMBL
Match: A0A0A0KUZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.5e-23
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 0

Query: 1   MVKPAVKAVLVEDVAAGKAADEVAGGERGETDDAVGGRI-VVGVSVAVGEEAIEMKVMGE 60
           MVKPAV+AV +E+VAAG+ ADEV G ERGETDDA+GG + VVGV V VGE+AIEM+++G+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIRERETVVGGGRGGGEERAEKGDEIGEEREKEERERVVGEIVELAL 109
           RG IR   TVVGGG  GG   AE+ +EIG+ERE+EERER+VGE++EL +
Sbjct: 91  RGEIR---TVVGGGEEGG---AEEREEIGKEREEEERERMVGEVIELCV 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6579228.15.4e-2675.93hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN51526.17.3e-2365.14hypothetical protein Csa_008164 [Cucumis sativus][more]
KAG6601827.13.4e-1261.22hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUZ63.5e-2365.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G005900.1CmUC01G005900.1mRNA