CmUC01G004800 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G004800
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	U6 snRNA phosphodiesterase
Location	CmU531Chr01: 4772572 .. 4779805 (+)
RNA-Seq Expression	CmUC01G004800
Synteny	CmUC01G004800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTCTGAGGGTTTCGTATGGAGGAAGCTCATCAGATGAAGAAGTGGATACAGTCTCCCCTTCATCAGGATCAACGTCAACATCAACATCAACACCACAACCCTTCGATGAGATTGTGAGCTTTTTACCTCTGCCTCCACCACCTCTCTCACTTCTCCATTTTCCAAATTCCTCCTGTAGTGCCCTTTTTCCTCCTTACATTTGCATTCTTTATTTTTTTCTCTTTGTAACATTGCTCATCAACTCTTTCACTATTTCTTGTTTAGCTGTTTTGGATGAGTTGCCAATTGATCAAGTGACTAGGGTTCGAAGCTTTCCTCATGTTCAAGGAAACTATGCCCTACACCTTTACATCCCAGGTATGTGAAGCTATGTAGTAGTTCATCTAATTTGATTCTTAAACATACTTTTCGTGTTTCCATTTTGATCCACCCGATGGGGCTTTTTTTGTTTTGTTATATATTTGGAAATACTTGTTACTCTTTATTGGCATATTGTTAGTTGGAACAGCTGCAATTCTATTTCTAGTGAGCTCTTCTCTGGTTTTTTTTAAGTAAAAGAAACAATTTCATTGAGAAATGAAAAATGGGAGAACCTCAAACACCCAAAGGTGATTACATCAAGGAGCGAGTGTTGCAATTTTTACCAAGAGAAAGCAGTAAACAAAATCGATTCTATAAATCGATCAAAAGAAAAGAAATGAACGTTAAAAGGCCGATTATTGCACTTGCCCCATAGTCTCCAGAAGAAAGCATGCACAATGGTCAACCAGACCGATTTCTTAGTACCACCAAAAGGATGACCCACCAATAAGGAAGCCAAAGTAGTAGAAATAAAGCTTGGACTAGTGAAAGACCAACCAAAAGCAGCCAAAATAATTCCCCAAAATCTGGAAGCAAACGAACAGTATAAAAACAAGTGGATGGTAGTCTCAGCACACTGACCACACATAATGCACCAAGAGGGAGAAAGATACATGTATGGGAAACATCGCTGCAATTGATCATTAGTGTTGATGGCACCCCAGCTAAGCTCCCCAAATGAAGATTTGATCTTCTTTGGATAACAATCTTTCCAAATTAAAGTATGAAGATCAGCTAAGGTTGAGTCAAGAGTATCCACCAAATCTGCCATGAGATATTTAACCGTAAAAATCATGGATGGGTCCAAATGCTAGATCCAAGCATTGGGAGAGGAGGTCAATCTAGCAGAAGCCAGATGATGCGATAGGGAAGCCCATTCAACGATTTCTAACTCAGTAAGGTTACGACGAAGATTTAGGTCCCAAGCATTGGATGATGAAATCCAAACATTTGCCACGGTAGCCTCCGGAAGCTGAATAAGGCGAAAATGTCTTGGGAATGCAGATGAAAGGACACCACAATTAATCCAAGAGCCATTCCAAAAAGATGTAGTAAAACCATTTCCAATTTTCCACCGGATATGATCAGTAACCAAACCAATGCAGTGACTAATAGACTTCCAAGGGGCCTTATAGGAGGCATTAGAGATCGGAGTAGGCCAAGAGCAAACCACACCATAATATTTTGCCACAATAAGATTTCTCCATAGAGCATCATTCTCGGTAAGAAATTGCCAAGTCCATTTTGCAAGAATGCGGGAATTACGAAGCTTAAAATTACCAATACCAAGGCCCCCCAAGGCATGTGGACGTTGAGTGGTTCCCCACTTCACGTTGTGCACGCCACCATTGCCCCGGGCACCCTCCCAAAAGAAATGACGAACCAACTTATCAAGGCAATTGATAATAGAGGAGGGAACTTTTTGAATAAGGATAAATAATACGTAGGCAGATTAGAAAGAGTAGCTTGAATGAGAGTATGTCTTCCCCCTTACGAGATATATGCATACTTCTAATTATGAAGTTTATGCTGAAATTTTTCCACCATAGGTTGCCAAAAAATAGCAGAATTGGAGTTACCACCTAATGGAAGCCCAAGATAAGTAGAGGGCCAGAAACCTCTTTTGCAGGCAAAGGAATTCACCAACCAATCAATATTAGAATCAAATACATGAATACCAAGGAGCTCGCTCTTAGAGAAATTTATTTTTAATCCAATAGCATTTTCAAAAATACAGACAACCTCAAACAAATTCTGAATAGCAGGATGGTTGACAGTAGAGAAAAACAATGTGTCATCAGCAAATTGTAGATGGTTCAAGGAGAAGGTTGAATTACTGACCGGGTGAGCAATAGTAAGACCCAAAGAGGAGCTATGGTCAAGGAGGCGACTCAAGCAATCAGCAACTAAGATAAATAAGAAAGGGGAGAGAGGATCACCCTGTCTAATACCACGAGTGAGAATAATCATCCCTTGGGGATGGCCATTAATAATAATGGAGTAATTTGCACTAGTAACACAACCTCTGATCCAAGAGCGCCAAAGACAACCAAAACCTTTAACCTTGAGAATAGAGTCAAGCATCTCCCAATCCACCGTGTCAAAAGCCTTCTCGAGATCAAGCTTAAGGACAACCCCAATCTTCTTAGAAGCAGACCAATGTTCAATGATCTCATTGGCCATCAAGGAGGCATCCAGAATCTGCCTGTTTTCCACAAAAGCGAGCTGGTTGGCTGAGATGGTATAAGGAAGAATCATCTTATTGAGAGAATCCGAGCCACAATTTTATAAGCATAGGGAATGAGACTAATAGGCCTATAGTCAGAAACTGATTTTGAGTCCACCTTCTTAGGAATTAAACAAATGTAGGTCTCATTCAGTTTAATATTTATAACCCCAGATGTGTAAAAATCTTGAATAAGGCGGATCATGTCAGATTTAATGGTGGACCAAAAGAATTTGAAAAATTCAATAGTGAAACCATCAGGGCCAAGAGGTTTATTTGTGCCAAGGGAGGAGACCGCCAAGAAAACCTCCTCTTCCGTAAAAGAGCGCTCCAAATCAGTAGCTTGAGAGGCTGATATAGGGCTCCAATCAAGGTTTGTTGGAAGAAAACGCTGATTATCGTCTTTAGTATAAAAGTTTGAATAAAAACCCAAGAATTCAATCTCAATGTCCTTGTCGCTTAGGAGACTAGTACCATTTCTGGAGAGAATTTCTGTGATCGTACTTTTTCGACGTCGAGCTACAACAAATCTGTGAAAAAAACAAGTATTTTCAACCCCTTCAACAAGCCATTTCAGTTTACAATGTTGCTGCCAATGAATATGATCTTGAACAGTCAAATTTTCAATTTGCTCTCGAATCAATCGACGCCTAATAATCTGATCTTCAGTAACAGAACCTCTATCCTTAGAATCATCTAACTATGCCAATTGTGTGATAAGAGATGGAAGTTTTGAAGCTTCTGTATGTTGAGTATTGTGCCACTCTCGGATAACTAATTTCAAACCTTGCAATTTCGTCATAAAACCATGTTCAGGCTAGTCAGTAATAGGATGGAGGTTCCGCCAATCCTCCACTAAAGTGCAGAAACCTGGAACTTTAAGCCAAGAGTTTTCAAATCAAAAGAGACATGGACCCCATGCAATGTTTCTCGTAGCAAGGCTAAAGGATAATGGTCAGATGTGACACGCTCCAGCCTCTAGAGATTAACAACCCCAAATTTGCGAAGGCAATTCTATGTGAGGAGAAAATGGTCTAGAAGAGAGAGATATTGGGGGGGGGGGGGTCTATAGCTAGACCAAGTAAAACATCCATTGGACAATGAAATATCTCGCAATTGGTAAGTAGAAATCGATTGGTTGAAAGAGCGCATACTAGCAGAGATAGAATTATCGTGTGATTTCTCCCATGACCACCTAGTAACATTGAAATCTCCACCAATAACCTAGTTATCACCACCCAAACCAGCCAGGACATCAAGCTCTTGCCCAAAATCAGCATGGGAAGCATTATCCGACAGGCCGTAGACTGCAGAAAGCCAAAATGAATAGCCATCAGTCAAGGATACATGGACCGACACTGTGTAGTGGCCATGGATGACTTCCTGAATTGTAAAATCAAGTTCACTCCACATGATAAGGATCCCCCTGAAGTATCTATGGCATCCAAAGCAGTCCATCCAATGAAAGAGGAACTCTAGATAGATTTGATCAAAAAGGTGTCAACAAATGGTAACTTTGTTTCTTGGAGGAGGACAATGCTAGGGTTGTGTTGCTGAATAAGCTTTTTAACCAAAGTTCATTTCCTCCAAGAGTTTATTCCTCAAACATTCCAAGAGAGAAGCTTGATTGATAGTCGGATGGGCCCTCCTTAATAGCCAAGGTGGCTGTTTTGTCATAATTGATTGATGATTGAAGACCAAGAAGCTATCTCTGGAGTTTAGTGTTTTTGCTGACGGAGGAGTATGGCTTCTTGGCTTTATTTGTAGGTGGATTAGCGGATGCCATAACACACAAACCATGTTTTTCAAGTAAGGAAGCCAAATTGTTAAGGCTGAAAGGAAGAGGAGAAGATGATTGAGGTTGCTGTTGATTGTAAAAAGAGGAGATAGGTGTTGGAGGATAAATTATTGATGTAGACGGGTTCAAAACCGGATCATTTGAGCCACGGTTAAGGTCAGATGGGATGGGAGGGAGGGAATAAAGAGGAAGTTGATTTGTTTTAGATGATCCCCAAAAACAGCCAGGGCGATTTGGTAAATTCCATGTCAATAGTAGGGCTAGAGGTATCCTTCTGTGTCAGAACCAACAAAGGAGACATTGGGTTTATTTGCTGATGTGGAGAAGGATGTGCCAGCGTGTAGATTGGTGGGCCCCTCACGGAATGTAATAGCAGATAGCGAAGGTTGAGAAGGTTGAGAAGGTTGAGAAAAAGATGGGGAAGCAGATTTGGAAGGGCTAGGATTTTGTATTTGGAAGGTAAAAGAGTGAGGAGAATTGGTGGGATTATGGGGGGAATTGGATAAGATGTATTCGGACTAATGGATGGTTCAGATTGTGGCGAGGGATAGGGAGCTCTTCTTTGGTTGATCACTGATTCATTATTAACAAGTAGATTGTTAGAGTCTAGATTGGAATCAATGTCTAACAATTAATCATAAACCTCGTGTGTGTTTCATTTTTTTTTTTTTTTTTGGCTACTCTTACAACATCGTCTTCTTGAAATATGTGTTGATTTCATTTTGGTTTATGTCTCTCAACCCTTTAGCCTACTATATTGCCTCTTAAGCATGATTAGTAATACTTATCACTTGCATGCATTTCAGTACATCCATAATTTTGCCTTTATCACCTTATGGAATTCTAGAATATTAATAACCAACTAAGAAATCAATAATATCTACGATAATGTTTCAACAATACCTACAAGTGTCAGATGATGGCTACTTTTAAACTGTTGGGTTTTTGACTCTTGAATGAAAAATTCCTCTGAGCTTCTTTCGTCAATTGAAGCACTTTCACAAAATTCCGTGATCAATGTATCTGCAATCTTCTAAATGTTTGTTCTTGATGAGGAAAAGCAGTTAAAGTAGATACGACTTATTTAAAAGAAATATGCACGTCTTTTTGTTATAAGTTTGTAGTTTCTGTTTAGTTTATTGATTTATAATCAAAACATTAAAAGAGATTTTAAACATCTACGAGTTAAAACATTCTCAAATACATGGATCTAAATAATTGTTGTGATTTTTCATTTGTTCTATGCAATACGACTTTTCACATAGATGCCCATTTGATTTTTCATGTTCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAGTTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATATTGACGTTCCTTTGGACGTTTTATGTAAAGATGACCTCAAACTTGAGCAAGCATTGACTAGAGAATTTCACATAAGTTTGTCAAGAACAATGGCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGGTAAGTTTAAACCGTCCATTTAGTACGATTAGTAATTTCCAAGTCGTTTTTGTATTTAACTTGTGTTTTTTTAAACAGTTATTGGATTGATTTTAGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGGACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGGTACGTCACATTTGAGGGATTTCCATTTCCGTTGTCTTTGCATTTTTAGCGTAAACGTGCTTTTCTTCATTCACAATTTTTGGGCCAATAATATGGGATGTTCCACTTCTGTTAAAGTTTCTTAGTTAGATTGTAGTTAACCCTTTACTTCACTTGTGGGTTTGATTTATGCATCTGATGCATAGATCAAAAGTTTTGACTTAGAATATCAGACAATAATTTTTACGTAGAATCTTGTAGGATGAGACAATTTTTTTATAGAATTTGTTGAGATTTGCTGAAATTTGATTACAAATGCATACACATACATGCAGGCATGTGCATAGATGTGTTTTGCATTCATGTTATTCAAAAATTAAATATTGGTAAATTAGGATTAAGTTGCCAACCCAACATGCGACTGTGACAATAATTTGTTGTACGCATTTAGTATTGTTATTCTCTCTAACACACGTTTTTGATATTACAAGTTGTTTATAAATGTAAACTCAAGAACAAACTTGTTTGTTAGGCCATCTTTGTTTGAGATCTTTCGACATAGATCATGATGATTTCTTGAGTTTTACATGGTTGAGGTTGACAATATTACATGGATTAAAGAGTGGTCCCTTTGTTTTCAATTGTCTGCAGATCAGAAGACAAATCCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGTTAATTGCATTAATTTTTTTCCCCCCTTCATCTTTATTCAATTATTAATGAAGAAGATGACCTCCTAGACTCTATTTTTGTAGGAAGCAAGACCACATATATCTTTTGTCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCAAGCAGTTCATAATGAATTGAAAAGGTCCGCAGTTAAGGAATCATTGAAGAGGTGTATTTTCAGCACCAAATTCAACGGTATCGAATGTAAGATTGGTAAAAAATTGTATAAAATATGTAAATTTCCTGATGAATAAAAAGATCATCGTGAAACGTGTCCTATTGTTTTCATATGTGCCCATGAAGTTCTTTTTATTTATTTCAGCTTTACTAACAAAATCACTTTTAGTTTTATAGATATTGCACTTTTTATTATCGTTAATTTAAGGTTCTTGATTTGTGAGGC

mRNA sequence

ATGGATGCTCTGAGGGTTTCGTATGGAGGAAGCTCATCAGATGAAGAAGTGGATACAGTCTCCCCTTCATCAGGATCAACGTCAACATCAACATCAACACCACAACCCTTCGATGAGATTGTGAGCTTTTTACCTCTGCCTCCACCACCTCTCTCACTTCTCCATTTTCCAAATTCCTCCTGTAGTGCCCTTTTTCCTCCTTACATTTGCATTCTTTATTTTTTTCTCTTTGTAACATTGCTCATCAACTCTTTCACTATTTCTTGTTTAGCTGTTTTGGATGAGTTGCCAATTGATCAAGTGACTAGGGTTCGAAGCTTTCCTCATGTTCAAGGAAACTATGCCCTACACCTTTACATCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAGTTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATATTGACGTTCCTTTGGACGTTTTATGTAAAGATGACCTCAAACTTGAGCAAGCATTGACTAGAGAATTTCACATAAGTTTGTCAAGAACAATGGCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGTTATTGGATTGATTTTAGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGGACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGATCAGAAGACAAATCCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAAGCAAGACCACATATATCTTTTGTCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCAAGCAGTTCATAATGAATTGAAAAGGTCCGCAGTTAAGGAATCATTGAAGAGGTGTATTTTCAGCACCAAATTCAACGGTATCGAATGTAAGATTGGTAAAAAATTGTATAAAATATGTAAATTTCCTGATGAATAAAAAGATCATCGTGAAACGTGTCCTATTGTTTTCATATGTGCCCATGAAGTTCTTTTTATTTATTTCAGCTTTACTAACAAAATCACTTTTAGTTTTATAGATATTGCACTTTTTATTATCGTTAATTTAAGGTTCTTGATTTGTGAGGC

Coding sequence (CDS)

ATGGATGCTCTGAGGGTTTCGTATGGAGGAAGCTCATCAGATGAAGAAGTGGATACAGTCTCCCCTTCATCAGGATCAACGTCAACATCAACATCAACACCACAACCCTTCGATGAGATTGTGAGCTTTTTACCTCTGCCTCCACCACCTCTCTCACTTCTCCATTTTCCAAATTCCTCCTGTAGTGCCCTTTTTCCTCCTTACATTTGCATTCTTTATTTTTTTCTCTTTGTAACATTGCTCATCAACTCTTTCACTATTTCTTGTTTAGCTGTTTTGGATGAGTTGCCAATTGATCAAGTGACTAGGGTTCGAAGCTTTCCTCATGTTCAAGGAAACTATGCCCTACACCTTTACATCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAGTTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATATTGACGTTCCTTTGGACGTTTTATGTAAAGATGACCTCAAACTTGAGCAAGCATTGACTAGAGAATTTCACATAAGTTTGTCAAGAACAATGGCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGTTATTGGATTGATTTTAGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGGACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGATCAGAAGACAAATCCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAAGCAAGACCACATATATCTTTTGTCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCAAGCAGTTCATAATGAATTGAAAAGGTCCGCAGTTAAGGAATCATTGAAGAGGTGTATTTTCAGCACCAAATTCAACGGTATCGAATGTAAGATTGGTAAAAAATTGTATAAAATATGTAAATTTCCTGATGAATAA

Protein sequence

MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSSCSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE

Homology

[Close]

BLAST of CmUC01G004800 vs. NCBI nr
Match: XP_008467330.1 (PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo])

HSP 1 Score: 496.9 bits (1278), Expect = 1.3e-136
Identity = 259/323 (80.19%), Postives = 273/323 (84.52%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDALR SYGGSSSDEEVDTVSPS    S STSTPQ FDE VS LPLPPPPLSLL+FPNS+
Sbjct: 1   MDALRASYGGSSSDEEVDTVSPS----SASTSTPQFFDETVSSLPLPPPPLSLLNFPNST 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
           C                              VLD+LPIDQ TRVRSFPHVQGNYALH+YI
Sbjct: 61  C------------------------------VLDDLPIDQATRVRSFPHVQGNYALHVYI 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PVYVPTNARKEVALF+KK+SSLVPALHLVDID+PLDVLCKDD KLEQAL REFHISLSRT
Sbjct: 121 PVYVPTNARKEVALFMKKISSLVPALHLVDIDIPLDVLCKDDHKLEQALAREFHISLSRT 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + IRVHQIDSIVTMLRQKLQS RRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR+Q
Sbjct: 181 VPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQ 240

Query: 241 IQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFS 300
           IQVVNEVYKLHNLPEFYKEARPHIS  WALGD+S++ SQAVHNELKRSAVKE  KRCIF+
Sbjct: 241 IQVVNEVYKLHNLPEFYKEARPHISLAWALGDVSQISSQAVHNELKRSAVKEPFKRCIFT 289

Query: 301 TKFNGIECKIGKKLYKICKFPDE 324
           TKFNGIECKIGKK+YKICKF DE
Sbjct: 301 TKFNGIECKIGKKMYKICKFADE 289

[Close]

BLAST of CmUC01G004800 vs. NCBI nr
Match: XP_038875354.1 (U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida])

HSP 1 Score: 495.7 bits (1275), Expect = 2.9e-136
Identity = 258/323 (79.88%), Postives = 272/323 (84.21%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDALR SYGGSSSDEE DTVSPS  S STS STPQ  DE VSFLPLPPP  SLLHFPNS+
Sbjct: 1   MDALRASYGGSSSDEEADTVSPS--SASTSASTPQLSDETVSFLPLPPPSPSLLHFPNST 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
                                         ++LD+LPIDQ TRVRSFPHVQGNYALHLYI
Sbjct: 61  ------------------------------SILDDLPIDQATRVRSFPHVQGNYALHLYI 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PVYVPTN RKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDD KLEQAL REFH+SLSRT
Sbjct: 121 PVYVPTNGRKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDHKLEQALAREFHVSLSRT 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + IRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR+Q
Sbjct: 181 VPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQ 240

Query: 241 IQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFS 300
           IQ+VNEVYKLHNLPEFYKEARPHIS  WA+GDLSKLLSQAVHNE+K SAV ++LKRCIF+
Sbjct: 241 IQIVNEVYKLHNLPEFYKEARPHISLAWAIGDLSKLLSQAVHNEMKSSAVMQTLKRCIFT 291

Query: 301 TKFNGIECKIGKKLYKICKFPDE 324
           TKF GIECKIGKK+YKICKFPDE
Sbjct: 301 TKFKGIECKIGKKIYKICKFPDE 291

[Close]

BLAST of CmUC01G004800 vs. NCBI nr
Match: XP_004143673.1 (U6 snRNA phosphodiesterase [Cucumis sativus] >KGN50332.1 hypothetical protein Csa_000253 [Cucumis sativus])

HSP 1 Score: 494.6 bits (1272), Expect = 6.6e-136
Identity = 257/323 (79.57%), Postives = 271/323 (83.90%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDALR SYGGSSSDEEVDTVSP     S STS PQ  DE V+FLPLPPPPLSLL+FPNS+
Sbjct: 1   MDALRASYGGSSSDEEVDTVSP----PSASTSAPQFLDETVTFLPLPPPPLSLLNFPNST 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
           C                              VLD+LPIDQ TRVRSFPHVQGNYALH+YI
Sbjct: 61  C------------------------------VLDDLPIDQATRVRSFPHVQGNYALHVYI 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PVYVPTNARKEVALF+KK+SSLVPALHLVDID+PLDVLCKDD KLEQA  REFHISLSRT
Sbjct: 121 PVYVPTNARKEVALFMKKISSLVPALHLVDIDIPLDVLCKDDQKLEQAWAREFHISLSRT 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + IRVHQIDSIVTMLRQKLQS RRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR+Q
Sbjct: 181 VPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQ 240

Query: 241 IQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFS 300
           IQVVNEVYKLHNLPEFYKEARPHIS  WALGD+S+L SQAVHNELKRSAVKE  KRCIF+
Sbjct: 241 IQVVNEVYKLHNLPEFYKEARPHISVAWALGDVSQLSSQAVHNELKRSAVKEPFKRCIFT 289

Query: 301 TKFNGIECKIGKKLYKICKFPDE 324
           TKFNGIECKIGKK+YKICKFPDE
Sbjct: 301 TKFNGIECKIGKKMYKICKFPDE 289

[Close]

BLAST of CmUC01G004800 vs. NCBI nr
Match: XP_023549871.1 (U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 476.9 bits (1226), Expect = 1.4e-130
Identity = 245/323 (75.85%), Postives = 264/323 (81.73%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           M+AL  SYGGSSSDE+VDTVSPSS S S S S PQ  DE  SFLPLPPPPLSLL FPNS+
Sbjct: 1   MEALMASYGGSSSDEDVDTVSPSSASASASASLPQLSDETESFLPLPPPPLSLLDFPNST 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
                                         + LD+LPI Q  RVRSFPHVQGNYA+HLYI
Sbjct: 61  ------------------------------SALDDLPIGQAARVRSFPHVQGNYAVHLYI 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PVY+PTNARKEVALFLKK+S LVPALHLVDID+PLD+LCKDD KLEQAL REFHISLSRT
Sbjct: 121 PVYIPTNARKEVALFLKKLSKLVPALHLVDIDIPLDILCKDDHKLEQALAREFHISLSRT 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + IRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEII GGLMEIR+ 
Sbjct: 181 VPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKH 240

Query: 241 IQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFS 300
           IQVVNEVYKLHNLPEFYKE RPHIS  WALGDLSKLLSQ+VH+E+K+S VKE  KRCIF+
Sbjct: 241 IQVVNEVYKLHNLPEFYKEGRPHISLAWALGDLSKLLSQSVHDEMKKSMVKEKSKRCIFT 293

Query: 301 TKFNGIECKIGKKLYKICKFPDE 324
            KFNGIECKIGKK++KICKFPDE
Sbjct: 301 AKFNGIECKIGKKMFKICKFPDE 293

[Close]

BLAST of CmUC01G004800 vs. NCBI nr
Match: XP_022969741.1 (U6 snRNA phosphodiesterase [Cucurbita maxima])

HSP 1 Score: 474.6 bits (1220), Expect = 7.0e-130
Identity = 246/327 (75.23%), Postives = 266/327 (81.35%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTST----PQPFDEIVSFLPLPPPPLSLLHF 60
           M+AL  SYGGSSSDE+ DTVSPSS S S S S     PQ  DE  SFLPLPPPPLSLL F
Sbjct: 1   MEALMASYGGSSSDEDADTVSPSSASASASASASASLPQLSDETESFLPLPPPPLSLLDF 60

Query: 61  PNSSCSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYAL 120
           PNS+                              + LD+LPI Q  RVRSFPHVQGNYA+
Sbjct: 61  PNST------------------------------SALDDLPIGQAARVRSFPHVQGNYAV 120

Query: 121 HLYIPVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHIS 180
           HLYIPVY+PTNARKEVALFLKK+S LVPALHLVDID+PLD+LCKDDLKLEQAL REFHIS
Sbjct: 121 HLYIPVYIPTNARKEVALFLKKLSKLVPALHLVDIDIPLDILCKDDLKLEQALAREFHIS 180

Query: 181 LSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLME 240
           LSRT+ IRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEII GGLME
Sbjct: 181 LSRTVPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLME 240

Query: 241 IRRQIQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKR 300
           IR++IQVVNEVYKLHNLPEFYKEARPHIS  WALGDLSKLLSQ+VH+E+K+S VKE  KR
Sbjct: 241 IRKRIQVVNEVYKLHNLPEFYKEARPHISLAWALGDLSKLLSQSVHDEMKKSMVKEKSKR 297

Query: 301 CIFSTKFNGIECKIGKKLYKICKFPDE 324
           CIF+ KFNGIECKIGKK++KICKFPDE
Sbjct: 301 CIFTAKFNGIECKIGKKMFKICKFPDE 297

[Close]

BLAST of CmUC01G004800 vs. ExPASy Swiss-Prot
Match: Q91W78 (U6 snRNA phosphodiesterase OS=Mus musculus OX=10090 GN=Usb1 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-18
Identity = 57/215 (26.51%), Postives = 102/215 (47.44%), Query Frame = 0


Query: 103 RVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDD 162
           R+R+FPH +GN+A H+YIP     + R  +   L +    VP L L++            
Sbjct: 72  RIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLME------------ 131

Query: 163 LKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSR 222
                    EFH+SLS+++ +R H I   V +L+ ++ S +R++   ++ + + N + +R
Sbjct: 132 ---------EFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTR 191

Query: 223 TFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVH 282
           TF+ +E ++ G  +    +  V+   K  +L  FY++   HIS  W +GD S  L     
Sbjct: 192 TFIGLE-VSSGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHISLAWCVGDASLQLEGQCL 251

Query: 283 NELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKI 318
            EL+    +      +     N + CK G K + +
Sbjct: 252 QELQEIVDEFEDSEMLLRVLANQVRCKSGNKFFSM 264

[Close]

BLAST of CmUC01G004800 vs. ExPASy Swiss-Prot
Match: Q6DEF6 (U6 snRNA phosphodiesterase OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-17
Identity = 68/215 (31.63%), Postives = 107/215 (49.77%), Query Frame = 0


Query: 103 RVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDD 162
           R+RSF H +GN+A +++ P Y P  A  EV   L K+ +   A      D+PL V     
Sbjct: 81  RLRSFQHERGNWATYVFFP-YDPEEAFLEV---LNKMMAAAEA-----HDIPLTV----- 140

Query: 163 LKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSR 222
                  + EFH+SLS+T+ +R H I   V  +R  L   ++++    K + + N + +R
Sbjct: 141 -------SEEFHLSLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEKTR 200

Query: 223 TFLSMEIITG--GLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQA 282
           TFL ME+ TG   L+E+ +   +V+E  K  NL  FY++   HIS  W +GD ++ L +A
Sbjct: 201 TFLGMEVSTGTPHLLELSK---IVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKKA 260

Query: 283 VHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLY 316
              EL+                 N + CK G K++
Sbjct: 261 CLLELQGLIDAHEDGPFHARLNCNELRCKTGNKVF 271

[Close]

BLAST of CmUC01G004800 vs. ExPASy Swiss-Prot
Match: Q5I0I5 (U6 snRNA phosphodiesterase OS=Rattus norvegicus OX=10116 GN=Usb1 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-16
Identity = 53/215 (24.65%), Postives = 101/215 (46.98%), Query Frame = 0


Query: 103 RVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDD 162
           R+R+FPH +GN+A H+YIP       +  + + L +     P L                
Sbjct: 72  RIRTFPHERGNWATHIYIPYEANEEFQDLLDVLLPRAQMFAPRL---------------- 131

Query: 163 LKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSR 222
           +++E     EFH+SLS+++ +R H I   V +L+ ++ S +R++   ++ + + N + +R
Sbjct: 132 VQME-----EFHLSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTR 191

Query: 223 TFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVH 282
           TF+ +E ++ G  +    +  V+ V K  +L  FY++   H+S  W +GD    L     
Sbjct: 192 TFIGLE-VSSGHAQFLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQCQ 251

Query: 283 NELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKI 318
            EL+    +      +       + CK G K + +
Sbjct: 252 QELQEIVDEFEDSEMLLRVLAEQVRCKSGNKFFSM 264

[Close]

BLAST of CmUC01G004800 vs. ExPASy Swiss-Prot
Match: Q9BQ65 (U6 snRNA phosphodiesterase OS=Homo sapiens OX=9606 GN=USB1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-15
Identity = 65/228 (28.51%), Postives = 105/228 (46.05%), Query Frame = 0


Query: 94  DELPIDQVT----RVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLV 153
           +E P D  T    RVR+FPH +GN+A H    VYVP  A++E   FL  +  L+P     
Sbjct: 57  EEGPEDDSTKHGGRVRTFPHERGNWATH----VYVPYEAKEE---FLDLLDVLLPHAQTY 116

Query: 154 DIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDF 213
              VP  V  K            FH+SLS+++ +R H I   V  L+ ++ S  R++   
Sbjct: 117 ---VPRLVRMK-----------VFHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTA 176

Query: 214 SKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWA 273
           ++ + + N + +RTF+ +E +T G  +    +  V+ V +  NL  FY++   H+S  W 
Sbjct: 177 NQVKIYTNQEKTRTFIGLE-VTSGHAQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWC 236

Query: 274 LGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKI 318
           +GD    L      EL+           +       + CK G K + +
Sbjct: 237 VGDARLQLEGQCLQELQAIVDGFEDAEVLLRVHTEQVRCKSGNKFFSM 262

[Close]

BLAST of CmUC01G004800 vs. ExPASy Swiss-Prot
Match: Q54W16 (U6 snRNA phosphodiesterase OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279967 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.6e-15
Identity = 51/169 (30.18%), Postives = 84/169 (49.70%), Query Frame = 0


Query: 103 RVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDD 162
           + R F HV+GNY   +Y    VPT +R ++   +++V  +                  ++
Sbjct: 70  KTRLFEHVEGNYPTFIYFK--VPTKSRNDIKELIEQVKEI-----------------GNE 129

Query: 163 LKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDFSK-WETFVNDDLS 222
           + ++Q     FHIS+SRT  IR H I++    L++ L++QR   I  SK    F+ND+ S
Sbjct: 130 INIKQDTETCFHISISRTFPIREHHIETFTQELKKTLKNQRSIDIQLSKECCVFINDNQS 189

Query: 223 RTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWAL 271
           R FLS+ I       I + I+ ++    L   P++Y    PH+S  W+L
Sbjct: 190 RIFLSIPINQSFKSNILKLIERIDSCLSLFKFPKYYDNPEPHLSISWSL 219

[Close]

BLAST of CmUC01G004800 vs. ExPASy TrEMBL
Match: A0A1S3CTB0 (U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 6.4e-137
Identity = 259/323 (80.19%), Postives = 273/323 (84.52%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDALR SYGGSSSDEEVDTVSPS    S STSTPQ FDE VS LPLPPPPLSLL+FPNS+
Sbjct: 1   MDALRASYGGSSSDEEVDTVSPS----SASTSTPQFFDETVSSLPLPPPPLSLLNFPNST 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
           C                              VLD+LPIDQ TRVRSFPHVQGNYALH+YI
Sbjct: 61  C------------------------------VLDDLPIDQATRVRSFPHVQGNYALHVYI 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PVYVPTNARKEVALF+KK+SSLVPALHLVDID+PLDVLCKDD KLEQAL REFHISLSRT
Sbjct: 121 PVYVPTNARKEVALFMKKISSLVPALHLVDIDIPLDVLCKDDHKLEQALAREFHISLSRT 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + IRVHQIDSIVTMLRQKLQS RRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR+Q
Sbjct: 181 VPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQ 240

Query: 241 IQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFS 300
           IQVVNEVYKLHNLPEFYKEARPHIS  WALGD+S++ SQAVHNELKRSAVKE  KRCIF+
Sbjct: 241 IQVVNEVYKLHNLPEFYKEARPHISLAWALGDVSQISSQAVHNELKRSAVKEPFKRCIFT 289

Query: 301 TKFNGIECKIGKKLYKICKFPDE 324
           TKFNGIECKIGKK+YKICKF DE
Sbjct: 301 TKFNGIECKIGKKMYKICKFADE 289

[Close]

BLAST of CmUC01G004800 vs. ExPASy TrEMBL
Match: A0A0A0KPH5 (U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.2e-136
Identity = 257/323 (79.57%), Postives = 271/323 (83.90%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDALR SYGGSSSDEEVDTVSP     S STS PQ  DE V+FLPLPPPPLSLL+FPNS+
Sbjct: 1   MDALRASYGGSSSDEEVDTVSP----PSASTSAPQFLDETVTFLPLPPPPLSLLNFPNST 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
           C                              VLD+LPIDQ TRVRSFPHVQGNYALH+YI
Sbjct: 61  C------------------------------VLDDLPIDQATRVRSFPHVQGNYALHVYI 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PVYVPTNARKEVALF+KK+SSLVPALHLVDID+PLDVLCKDD KLEQA  REFHISLSRT
Sbjct: 121 PVYVPTNARKEVALFMKKISSLVPALHLVDIDIPLDVLCKDDQKLEQAWAREFHISLSRT 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + IRVHQIDSIVTMLRQKLQS RRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR+Q
Sbjct: 181 VPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQ 240

Query: 241 IQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFS 300
           IQVVNEVYKLHNLPEFYKEARPHIS  WALGD+S+L SQAVHNELKRSAVKE  KRCIF+
Sbjct: 241 IQVVNEVYKLHNLPEFYKEARPHISVAWALGDVSQLSSQAVHNELKRSAVKEPFKRCIFT 289

Query: 301 TKFNGIECKIGKKLYKICKFPDE 324
           TKFNGIECKIGKK+YKICKFPDE
Sbjct: 301 TKFNGIECKIGKKMYKICKFPDE 289

[Close]

BLAST of CmUC01G004800 vs. ExPASy TrEMBL
Match: A0A6J1HYN3 (U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 3.4e-130
Identity = 246/327 (75.23%), Postives = 266/327 (81.35%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTST----PQPFDEIVSFLPLPPPPLSLLHF 60
           M+AL  SYGGSSSDE+ DTVSPSS S S S S     PQ  DE  SFLPLPPPPLSLL F
Sbjct: 1   MEALMASYGGSSSDEDADTVSPSSASASASASASASLPQLSDETESFLPLPPPPLSLLDF 60

Query: 61  PNSSCSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYAL 120
           PNS+                              + LD+LPI Q  RVRSFPHVQGNYA+
Sbjct: 61  PNST------------------------------SALDDLPIGQAARVRSFPHVQGNYAV 120

Query: 121 HLYIPVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHIS 180
           HLYIPVY+PTNARKEVALFLKK+S LVPALHLVDID+PLD+LCKDDLKLEQAL REFHIS
Sbjct: 121 HLYIPVYIPTNARKEVALFLKKLSKLVPALHLVDIDIPLDILCKDDLKLEQALAREFHIS 180

Query: 181 LSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLME 240
           LSRT+ IRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEII GGLME
Sbjct: 181 LSRTVPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLME 240

Query: 241 IRRQIQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKR 300
           IR++IQVVNEVYKLHNLPEFYKEARPHIS  WALGDLSKLLSQ+VH+E+K+S VKE  KR
Sbjct: 241 IRKRIQVVNEVYKLHNLPEFYKEARPHISLAWALGDLSKLLSQSVHDEMKKSMVKEKSKR 297

Query: 301 CIFSTKFNGIECKIGKKLYKICKFPDE 324
           CIF+ KFNGIECKIGKK++KICKFPDE
Sbjct: 301 CIFTAKFNGIECKIGKKMFKICKFPDE 297

[Close]

BLAST of CmUC01G004800 vs. ExPASy TrEMBL
Match: A0A6J1EQH7 (U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.7e-127
Identity = 243/323 (75.23%), Postives = 261/323 (80.80%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           M+AL  SYGGSSSDE+VDTVSPS  S S S S PQ  DE  SFLPLPPPPLSLL FPNS+
Sbjct: 1   MEALMASYGGSSSDEDVDTVSPS--SASASASLPQLSDETESFLPLPPPPLSLLDFPNST 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
                                         + LD+LPI Q  RVRSFPHVQGNYALHLYI
Sbjct: 61  ------------------------------SALDDLPIGQAARVRSFPHVQGNYALHLYI 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PVY+ TNARKEVALFLKK+S LVPALHLVDID+PLD+LCKDD KLEQAL REFHISLSRT
Sbjct: 121 PVYITTNARKEVALFLKKLSKLVPALHLVDIDIPLDILCKDDHKLEQALAREFHISLSRT 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + IRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEII GGLMEIR+ 
Sbjct: 181 VPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKH 240

Query: 241 IQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFS 300
           IQVVNEVYKLHNLPEFYKE RPHIS  WALGDLSKLLSQ+VH+E+K+S VKE  KR IF+
Sbjct: 241 IQVVNEVYKLHNLPEFYKEGRPHISLAWALGDLSKLLSQSVHDEMKKSMVKEKSKRSIFT 291

Query: 301 TKFNGIECKIGKKLYKICKFPDE 324
            KFNGIECKIGKK++KICKFPDE
Sbjct: 301 AKFNGIECKIGKKMFKICKFPDE 291

[Close]

BLAST of CmUC01G004800 vs. ExPASy TrEMBL
Match: A0A6J1DNL4 (U6 snRNA phosphodiesterase OS=Momordica charantia OX=3673 GN=LOC111022878 PE=3 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.5e-109
Identity = 219/323 (67.80%), Postives = 242/323 (74.92%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDAL+ SY GSSSDEE D VS +    S     P           LPPPPLSLL FPNS 
Sbjct: 1   MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS----------LPPPPLSLLDFPNS- 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
                                        ++ L +LPI Q TR RSFPHV+GNYALH+YI
Sbjct: 61  -----------------------------ISALHDLPIAQPTRFRSFPHVEGNYALHVYI 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PVY+PT ++KEV LFLKKVSSLVP+LHLVDIDVPL  LCKD+ KLEQAL REFHISLSRT
Sbjct: 121 PVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRT 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + IRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLSMEII GGLMEIR+Q
Sbjct: 181 VPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ 240

Query: 241 IQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFS 300
           IQVVNEVYK HNLPEFYKE RPHIS  WALGDLSKLLS+ V +++KRS++  S KRCIF+
Sbjct: 241 IQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPS-KRCIFT 282

Query: 301 TKFNGIECKIGKKLYKICKFPDE 324
           TKF+GIECKIGKK YKICK PDE
Sbjct: 301 TKFSGIECKIGKKTYKICKSPDE 282

[Close]

BLAST of CmUC01G004800 vs. TAIR 10
Match: AT5G51170.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 312.8 bits (800), Expect = 3.3e-85
Identity = 170/323 (52.63%), Postives = 211/323 (65.33%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           M+ALR SYG SSSD + D +SP+S  T+ S             + LPPPPL+LL      
Sbjct: 1   MEALRASYGDSSSDSDTDDLSPASPVTANSGEKDS--------ISLPPPPLALLD----- 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
                                    +I     LD    +   RVR+FPHV GNYALH+Y+
Sbjct: 61  -------------------------SIVSTGSLDFFSTEPGVRVRNFPHVDGNYALHVYV 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PV +P   +KE+  FLKKV+S+VP LHLV+ DVPL +LCKDD K E+AL REFHISL R 
Sbjct: 121 PVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSILCKDDQKFERALGREFHISLGRN 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + +RVHQI+S+++MLRQKLQ Q+RY IDF+KWE FVNDD +R+FLS+EI T GL EI +Q
Sbjct: 181 VPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITTSGLSEISKQ 240

Query: 241 IQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFS 300
           I  VNEVYKLHNLPEFYK+ RPHIS VWALGD+   L  AV  EL++      ++  IF+
Sbjct: 241 IDAVNEVYKLHNLPEFYKDPRPHISLVWALGDIRTSLKGAVDVELRKLRAGGCVQNRIFT 285

Query: 301 TKFNGIECKIGKKLYKICKFPDE 324
           +KF GIECKIG K +KICK PDE
Sbjct: 301 SKFCGIECKIGNKTHKICKLPDE 285

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BLAST of CmUC01G004800 vs. TAIR 10
Match: AT5G51170.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 166 Blast hits to 166 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 19; Plants - 35; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 207.6 bits (527), Expect = 1.5e-53
Identity = 117/244 (47.95%), Postives = 153/244 (62.70%), Query Frame = 0


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           M+ALR SYG SSSD + D +SP+S  T+ S             + LPPPPL+LL      
Sbjct: 1   MEALRASYGDSSSDSDTDDLSPASPVTANSGEKDS--------ISLPPPPLALLD----- 60

Query: 61  CSALFPPYICILYFFLFVTLLINSFTISCLAVLDELPIDQVTRVRSFPHVQGNYALHLYI 120
                                    +I     LD    +   RVR+FPHV GNYALH+Y+
Sbjct: 61  -------------------------SIVSTGSLDFFSTEPGVRVRNFPHVDGNYALHVYV 120

Query: 121 PVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRT 180
           PV +P   +KE+  FLKKV+S+VP LHLV+ DVPL +LCKDD K E+AL REFHISL R 
Sbjct: 121 PVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSILCKDDQKFERALGREFHISLGRN 180

Query: 181 MAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQ 240
           + +RVHQI+S+++MLRQKLQ Q+RY IDF+KWE FVNDD +R+FLS+EI T GL E+  +
Sbjct: 181 VPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITTSGLSEVLSK 206

Query: 241 IQVV 245
           + ++
Sbjct: 241 LMLL 206

The following BLAST results are available for this feature:

BLAST of CmUC01G004800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467330.1	1.3e-136	80.19	PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]	[more]
XP_038875354.1	2.9e-136	79.88	U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]	[more]
XP_004143673.1	6.6e-136	79.57	U6 snRNA phosphodiesterase [Cucumis sativus] >KGN50332.1 hypothetical protein Cs...	[more]
XP_023549871.1	1.4e-130	75.85	U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo]	[more]
XP_022969741.1	7.0e-130	75.23	U6 snRNA phosphodiesterase [Cucurbita maxima]	[more]

BLAST of CmUC01G004800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91W78	1.5e-18	26.51	U6 snRNA phosphodiesterase OS=Mus musculus OX=10090 GN=Usb1 PE=2 SV=1	[more]
Q6DEF6	1.7e-17	31.63	U6 snRNA phosphodiesterase OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1	[more]
Q5I0I5	1.9e-16	24.65	U6 snRNA phosphodiesterase OS=Rattus norvegicus OX=10116 GN=Usb1 PE=2 SV=1	[more]
Q9BQ65	3.5e-15	28.51	U6 snRNA phosphodiesterase OS=Homo sapiens OX=9606 GN=USB1 PE=1 SV=1	[more]
Q54W16	4.6e-15	30.18	U6 snRNA phosphodiesterase OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279967 ...	[more]

BLAST of CmUC01G004800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CTB0	6.4e-137	80.19	U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1	[more]
A0A0A0KPH5	3.2e-136	79.57	U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1	[more]
A0A6J1HYN3	3.4e-130	75.23	U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1	[more]
A0A6J1EQH7	2.7e-127	75.23	U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV...	[more]
A0A6J1DNL4	1.5e-109	67.80	U6 snRNA phosphodiesterase OS=Momordica charantia OX=3673 GN=LOC111022878 PE=3 S...	[more]

BLAST of CmUC01G004800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51170.1	3.3e-85	52.63	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]
AT5G51170.2	1.5e-53	47.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027521	U6 snRNA phosphodiesterase Usb1	PFAM	PF09749	HVSL	coord: 98..318 e-value: 5.7E-54 score: 183.1
IPR027521	U6 snRNA phosphodiesterase Usb1	PANTHER	PTHR13522	UNCHARACTERIZED	coord: 1..322
IPR027521	U6 snRNA phosphodiesterase Usb1	HAMAP	MF_03040	USB1	coord: 3..320 score: 25.98634
None	No IPR available	GENE3D	3.90.1140.10	Cyclic phosphodiesterase	coord: 106..318 e-value: 8.8E-54 score: 183.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G004800.1	CmUC01G004800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0034477	U6 snRNA 3'-end processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends
molecular_function	GO:0004518	nuclease activity