CmUC01G004470 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G004470
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	60S ribosomal protein L36
Location	CmU531Chr01: 4466336 .. 4468920 (-)
RNA-Seq Expression	CmUC01G004470
Synteny	CmUC01G004470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTCGCTTTCGCTCTCGCTCTTACTTCCTTTCCTCGCTGACAATCAATCTTATCTCTCTTGCTCTCTCTCACTCTTGCTCATTGGAATTGGTTGCGTTGGAGTTTCGAGTATTCGTGTTGGAAAAGATGAAGAAGCTAGAGAAGATGTAGGAGAAGAAGAAAAGAAAGAAAAAAAAAAAGAACAGAAAGGGAGTCACGAAGAAGAGAAAAAAGAAAGAAAAGAAAGAAGAAGACCCAGTCGACATGGGTAAATTGTGGATCGGTCCATGATTTGCATGTCATGTGGAACATCCATGATTTTGCTACCCTACCTTTGTCAATATTTTAAATCTAACCCTATTATTGTTTAAAATAACATTATTTTTTTAACGTCCTATGACATCAATTGAATGTCAATTACTATTGTTTTAAAAAAGGGGCATTTTGGGCCTCCAAAATGGGTCAACTGTACAATTTTTTCCTCATCTACCAAAAAAGTCCCCAAACATAATTTTTTTAAAAAACGGGCCAGTTTTCCTAATTCAAAACTCAAATGACCAATTTTTACCAATTTATCGTAGTTGGTCTTAGTCAAAATGTTTTCATCACAATATAATTAATAAAACTTATTAAAATATAGATTATATAAGGTTTTAAAATGAGTCATTCAGCCCAAATTGAAGTCTGGCCCATTAACAAATAATGGCATGATATAAATTCACCTCTAAATCTCAAACCCTAATTTTTCCTATCCTAGGTCGTCAGACTCATAGAACAGGTGAGAAACCCTTTCTTTGTTGCTTTCCGAATTGTTGTTCACTGGTAAGTCTATCTTTGAGTGCTGGAATAGGGCGTAGATCTCTGTTCCCGTCGATCAAATTTTCAAGCTCGATACCCTTAATTTCTTTGTGCGTTATATTCTAAGTTATCTGTTTTTGCCGTGTTTTTAGAAGAACGATTATCCTGTTTCTGACTCCTTCTTACCAATGATATCGTTTCTTTGTGCGTTCTGTTCTACTCTTTAGTATAAGAATGTATTCTATATTTTGTATCTTGATCTCTTGTCGCTAGTTAGCTCGCGATGGCGCCATAATAATTTCAACGATATAAAAGGGGATTTTTAGTTTTATTTGTTAGAAATAATTCTATAACTGGGAAGTACTGTGCACACGTTCTGGTTCTGGGATTTTCTATTCTACTCAGAAATGTTTTATTCTTTATGGAACTTTTCAACTGTAAATGTCTGCAGCTGTACTTCGAATGTGCTTGGGGAAATAAGTTTGGATGTGGCTAGAAATTTGCATGGTTATTACTTGATTTAAGCATTCAGTTTTAGTTACGAAGATGAAATGTCTGGAGTCTGATTTCGTCTTTGCAGCCTTAGGGTTTTGCAATTAACCTTAATTTTGATGGAGTTACTAATTGGTTTTTATTGAAACAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACGTAGTCACCAAGAAGGAGTTGGCCCCACGACCCTCCGATCGGAAAGGAGTAAGTCAATCAACATTTTACTAGATGTTTTAAAATTCTCTCTAATGGTGAAAGTGGAAGGCGTAGGGTTTTCTCTGTTTAAACATGTTCTTGCGAGGAGGTGTGTGTTAGTTTTTTAGGAGCTTGAGGAATGAGCTTAATTTATTTCATTTGATTGGACCAGTTCTGACCTGTAGTTACATACTCTTACCATGATGCTCAGAAAGTCTTGTTATATTGTTCTTTTATCAGCATTGTCTTTCACGAAATGTAAGATTGTTTTCTCAAAATTCTCTGTTTACTAATTAATGTAGAAAACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTGAAAGTTGGAAAGGACAAGCGTGCTCTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAATGTCCAATGTTCTAAGAAAAATGAGGTAATCCTTCTGCCTTTATAGAATCATGGTTTGTTTGTGTGAGAAGTCCTTATTTTATAGTTGGATCTGTTGTGTGCAAAAGAAACCTCGGCACATTATATTGGCTAACATGTTTGTGTATAACACATGTTTGTACAGTGGGAGTGATAGGTCCAATATTTGTTACACTATGCATGACTTTTAATAACATTTGAAAACAATATGCGTCAAACTTGTATTTGAAAGAATGTAAAAGCACAAACTTATTTACTTTGAATTTTCTTGTATAAAAATGTATTTCTTTTTAGGGAACTTACATTTTAGTAAAGTCATGTGTATTACTCTGTAATCAAAATTGTTGCAATGGTAAAGGATTTTCTTTGTTATTCATAATTCACATAATATTGTTAACTAGACATTGTATTTATATGGGTCCCACTTTTCAATATATGAGGAGTGATTGTGTTTGTCGTATCTGTTCTTACCGATCTTTAAACTTGTGAGGAAGTAATTAGCATTCTGATTTCAACTGGGATATGTTGTATTTGCAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGA

mRNA sequence

ATGTTCTCTCGCTTTCGCTCTCGCTCTTACTTCCTTTCCTCGCTGACAATCAATCTTATCTCTCTTGCTCTCTCTCACTCTTGCTCATTGGAATTGGTTGCGTTGGAGTTTCGAGTCGTCAGACTCATAGAACAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACGTAGTCACCAAGAAGGAGTTGGCCCCACGACCCTCCGATCGGAAAGGAAAAACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTGAAAGTTGGAAAGGACAAGCGTGCTCTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAATGTCCAATGTTCTAAGAAAAATGAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGA

Coding sequence (CDS)

ATGTTCTCTCGCTTTCGCTCTCGCTCTTACTTCCTTTCCTCGCTGACAATCAATCTTATCTCTCTTGCTCTCTCTCACTCTTGCTCATTGGAATTGGTTGCGTTGGAGTTTCGAGTCGTCAGACTCATAGAACAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACGTAGTCACCAAGAAGGAGTTGGCCCCACGACCCTCCGATCGGAAAGGAAAAACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTGAAAGTTGGAAAGGACAAGCGTGCTCTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAATGTCCAATGTTCTAAGAAAAATGAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGA

Protein sequence

MFSRFRSRSYFLSSLTINLISLALSHSCSLELVALEFRVVRLIEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK

Homology

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BLAST of CmUC01G004470 vs. NCBI nr
Match: KAG6579388.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-52
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 41  RLIEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFA 100
           RLIEQVMAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFA
Sbjct: 44  RLIEQVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFA 103

Query: 101 PYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
           PYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 104 PYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 159

[Close]

BLAST of CmUC01G004470 vs. NCBI nr
Match: KAG6574185.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.6 bits (527), Expect = 7.7e-50
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 44   EQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYE 103
            E+ MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYE
Sbjct: 962  EKAMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYE 1021

Query: 104  KRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
            KRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGGGEKKK
Sbjct: 1022 KRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 1074

[Close]

BLAST of CmUC01G004470 vs. NCBI nr
Match: KAG6576718.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 42  LIEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAP 101
           L E+ MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK+SKRVLFVR+LIREVAGFAP
Sbjct: 643 LSEKAMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAP 702

Query: 102 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
           YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGGGEKKK
Sbjct: 703 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 757

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BLAST of CmUC01G004470 vs. NCBI nr
Match: XP_022922109.1 (60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022973014.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023549776.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >KAG7016868.1 60S ribosomal protein L36-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-49
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of CmUC01G004470 vs. NCBI nr
Match: KAF3946989.1 (hypothetical protein CMV_026816, partial [Castanea mollissima])

HSP 1 Score: 206.1 bits (523), Expect = 2.3e-49
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 45  QVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEK 104
           +VMAPKQPNTGLFVG N+GH+VTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEK
Sbjct: 9   KVMAPKQPNTGLFVGANRGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEK 68

Query: 105 RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
           RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR+GGGGEKKK
Sbjct: 69  RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSGGGGEKKK 120

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BLAST of CmUC01G004470 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.2e-42
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           M   Q  TGLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 157
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of CmUC01G004470 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.8e-40
Identity = 88/105 (83.81%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 54  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 113
           TGLFVGLNKGHVVTK+E  PRP++RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 114 KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 157
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

[Close]

BLAST of CmUC01G004470 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-39
Identity = 88/105 (83.81%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 54  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 113
           TGLFVGLNKGHVVT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 114 KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG---GEKK 156
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]

BLAST of CmUC01G004470 vs. ExPASy Swiss-Prot
Match: P52866 (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-33
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGKTSKR  FVR+LIREVAGF PYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 138
           TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61  TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]

BLAST of CmUC01G004470 vs. ExPASy Swiss-Prot
Match: Q9LRB8 (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 58  VGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 117
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 118 ALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGE 154
           ALK+ KRKLGTH R KKKREEM+ VLRKM+A   GE
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

[Close]

BLAST of CmUC01G004470 vs. ExPASy TrEMBL
Match: A0A6J1IDA3 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111471531 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.3e-50
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of CmUC01G004470 vs. ExPASy TrEMBL
Match: A0A6J1E2F7 (60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430179 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.3e-50
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of CmUC01G004470 vs. ExPASy TrEMBL
Match: W9SA20 (60S ribosomal protein L36 OS=Morus notabilis OX=981085 GN=L484_006508 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of CmUC01G004470 vs. ExPASy TrEMBL
Match: A0A6J1CID5 (60S ribosomal protein L36 OS=Momordica charantia OX=3673 GN=LOC111011461 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.9e-49
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           MAPKQPN+GLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of CmUC01G004470 vs. ExPASy TrEMBL
Match: A0A4V6A9C3 (60S ribosomal protein L36 OS=Populus alba OX=43335 GN=D5086_0000141610 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.9e-49
Identity = 107/114 (93.86%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 43  IEQVMAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPY 102
           + Q MAPKQPNTGLFVGLNKGHVVTKK+LAPRPSDRKGK+SKRVLFVRSLIREVAGFAPY
Sbjct: 26  LSQAMAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPY 85

Query: 103 EKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 157
           EKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSNVLRKMRA GGGEKKK
Sbjct: 86  EKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAAGGGEKKK 139

[Close]

BLAST of CmUC01G004470 vs. TAIR 10
Match: AT3G53740.2 (Ribosomal protein L36e family protein )

HSP 1 Score: 171.8 bits (434), Expect = 4.4e-43
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           M   Q  TGLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 157
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of CmUC01G004470 vs. TAIR 10
Match: AT3G53740.3 (Ribosomal protein L36e family protein )

HSP 1 Score: 171.8 bits (434), Expect = 4.4e-43
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           M   Q  TGLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 157
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of CmUC01G004470 vs. TAIR 10
Match: AT3G53740.4 (Ribosomal protein L36e family protein )

HSP 1 Score: 171.8 bits (434), Expect = 4.4e-43
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 47  MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 106
           M   Q  TGLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 107 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 157
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of CmUC01G004470 vs. TAIR 10
Match: AT5G02450.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 165.2 bits (417), Expect = 4.1e-41
Identity = 88/105 (83.81%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 54  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 113
           TGLFVGLNKGHVVTK+E  PRP++RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 114 KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 157
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

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BLAST of CmUC01G004470 vs. TAIR 10
Match: AT2G37600.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 164.1 bits (414), Expect = 9.1e-41
Identity = 88/105 (83.81%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 54  TGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 113
           TGLFVGLNKGHVVT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 114 KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG---GEKK 156
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

The following BLAST results are available for this feature:

BLAST of CmUC01G004470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579388.1	1.3e-52	98.28	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6574185.1	7.7e-50	95.58	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6576718.1	1.3e-49	93.91	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022922109.1	1.7e-49	98.18	60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022973014.1 60S riboso...	[more]
KAF3946989.1	2.3e-49	95.54	hypothetical protein CMV_026816, partial [Castanea mollissima]	[more]

BLAST of CmUC01G004470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M352	6.2e-42	82.14	60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1	[more]
Q9LZ57	5.8e-40	83.81	60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1	[more]
O80929	1.3e-39	83.81	60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1	[more]
P52866	1.4e-33	82.42	60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2	[more]
Q9LRB8	1.0e-28	71.88	60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1	[more]

BLAST of CmUC01G004470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IDA3	8.3e-50	98.18	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111471531 PE=3 SV=1	[more]
A0A6J1E2F7	8.3e-50	98.18	60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430179 PE=3 SV=...	[more]
W9SA20	1.1e-49	99.09	60S ribosomal protein L36 OS=Morus notabilis OX=981085 GN=L484_006508 PE=3 SV=1	[more]
A0A6J1CID5	1.9e-49	98.18	60S ribosomal protein L36 OS=Momordica charantia OX=3673 GN=LOC111011461 PE=3 SV...	[more]
A0A4V6A9C3	1.9e-49	93.86	60S ribosomal protein L36 OS=Populus alba OX=43335 GN=D5086_0000141610 PE=3 SV=1	[more]

BLAST of CmUC01G004470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53740.2	4.4e-43	82.14	Ribosomal protein L36e family protein	[more]
AT3G53740.3	4.4e-43	82.14	Ribosomal protein L36e family protein	[more]
AT3G53740.4	4.4e-43	82.14	Ribosomal protein L36e family protein	[more]
AT5G02450.1	4.1e-41	83.81	Ribosomal protein L36e family protein	[more]
AT2G37600.1	9.1e-41	83.81	Ribosomal protein L36e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000509	Ribosomal protein L36e	PFAM	PF01158	Ribosomal_L36e	coord: 54..147 e-value: 1.2E-42 score: 144.1
IPR000509	Ribosomal protein L36e	PANTHER	PTHR10114	60S RIBOSOMAL PROTEIN L36	coord: 37..156
IPR000509	Ribosomal protein L36e	PROSITE	PS01190	RIBOSOMAL_L36E	coord: 101..111
IPR038097	Ribosomal protein L36e domain superfamily	GENE3D	1.10.10.1760	60S ribosomal protein L36	coord: 46..151 e-value: 1.8E-44 score: 152.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..156
None	No IPR available	PANTHER	PTHR10114:SF21	60S RIBOSOMAL PROTEIN L36	coord: 37..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G004470.1	CmUC01G004470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome