Clc11G20530 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G20530
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	splicing factor U2af small subunit B-like
Location	ClcChr11: 30731686 .. 30732510 (-)
RNA-Seq Expression	Clc11G20530
Synteny	Clc11G20530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCACGGAGATCGCTGCTCTCGCCTTCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCCGGGGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTCGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCAGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGTTGCAAGGACGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCTGTGACTGATTTCCGCGAAGCAACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGTACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGGGATCGTGACTATCGGGGAAACGGACGGAGCAGGGAGCGTCAGGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCAAGACGAAGCAGAAGCCCTGTCACTGCGAGAGAAGGTAGCGAAGAGCGGCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

mRNA sequence

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCACGGAGATCGCTGCTCTCGCCTTCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCCGGGGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTCGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCAGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGTTGCAAGGACGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCTGTGACTGATTTCCGCGAAGCAACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGTACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGGGATCGTGACTATCGGGGAAACGGACGGAGCAGGGAGCGTCAGGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCAAGACGAAGCAGAAGCCCTGTCACTGCGAGAGAAGGTAGCGAAGAGCGGCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

Coding sequence (CDS)

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCACGGAGATCGCTGCTCTCGCCTTCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCCGGGGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTCGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCAGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGTTGCAAGGACGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCTGTGACTGATTTCCGCGAAGCAACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGTACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGGGATCGTGACTATCGGGGAAACGGACGGAGCAGGGAGCGTCAGGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCAAGACGAAGCAGAAGCCCTGTCACTGCGAGAGAAGGTAGCGAAGAGCGGCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ

Homology

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BLAST of Clc11G20530 vs. NCBI nr
Match: XP_038900064.1 (splicing factor U2af small subunit B-like [Benincasa hispida])

HSP 1 Score: 543.1 bits (1398), Expect = 1.4e-150
Identity = 271/274 (98.91%), Postives = 273/274 (99.64%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRH 240
           RRKLFGRYRGYRRSRSRSRSLSPRNRKE+DRRERDYRDRDYRGNGRS+ERQDRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERQDRDGGRRRH 240

Query: 241 GSPRRSRSPVTAREGSEERRARIEQWNREREEKQ 275
           GSPRRSRSPVT REGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSPVTVREGSEERRARIEQWNREREEKQ 274

[Close]

BLAST of Clc11G20530 vs. NCBI nr
Match: XP_008453027.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >KAA0064675.1 splicing factor U2af small subunit B-like [Cucumis melo var. makuwa] >TYK19916.1 splicing factor U2af small subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 531.6 bits (1368), Expect = 4.1e-147
Identity = 268/276 (97.10%), Postives = 271/276 (98.19%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLSPRNRKEYDRRERDYR+R+YRGNGRS+ER DRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240

Query: 241 GSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ 275
           GSPR  RSRSPV AREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Clc11G20530 vs. NCBI nr
Match: XP_004145565.1 (splicing factor U2af small subunit B [Cucumis sativus] >KGN55547.1 hypothetical protein Csa_012279 [Cucumis sativus])

HSP 1 Score: 528.5 bits (1360), Expect = 3.5e-146
Identity = 267/276 (96.74%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLSPRNRKE+DRRERDYRDRDYRGNGRS+ER DRDGGRRR 
Sbjct: 181 RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ 240

Query: 241 GSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ 275
           GSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Clc11G20530 vs. NCBI nr
Match: XP_022142994.1 (splicing factor U2af small subunit B-like [Momordica charantia])

HSP 1 Score: 524.6 bits (1350), Expect = 5.0e-145
Identity = 266/276 (96.38%), Postives = 270/276 (97.83%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRE---RQDRDGGR 240
           RRKLFGRYRGYRRSRSRSRSLSPRNRK+YDRRERD+RDRD+RGNGRS+E   R DRDGGR
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240

Query: 241 RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEK 274
           RRHGSPRRSRSPV  REGSEERRARIEQWNREREEK
Sbjct: 241 RRHGSPRRSRSPV--REGSEERRARIEQWNREREEK 274

[Close]

BLAST of Clc11G20530 vs. NCBI nr
Match: XP_023525325.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023525326.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023525327.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 520.4 bits (1339), Expect = 9.5e-144
Identity = 266/278 (95.68%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQ---DRDGG 240
           RRKLFG R+RGYRRSRSRSRSLSPRNRK+YDRRERDYRDRD+RGNGRS+ER    DRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRFDRDGG 240

Query: 241 RRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ 275
           RRRHGSPRRSRSPV  REGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPV--REGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Clc11G20530 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 6.4e-127
Identity = 238/281 (84.70%), Postives = 253/281 (90.04%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRY-RGYRR-SRSRSRSLSPRNRKEYDR-RER-DYRDRDYRGNGR----SRERQD 240
           RRKLFGRY R YRR SRSRSRS+SPR ++E+ R RER D RDRD  GNG+      ER D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREE 273
           RD GGRRRHGSP+RSRSP   REGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Clc11G20530 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 9.2e-126
Identity = 239/292 (81.85%), Postives = 259/292 (88.70%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRY-RGYR---RSRSRSRSLSPRNRKEYDR-----RERDYRDRD---YR-GNGR- 240
           RRKLFGRY R YR   RSRSRSRS+SPRN+++ DR     RE  +RDRD   YR G+G+ 
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 ---SRERQDRDGGR-RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ 275
                ERQ+RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of Clc11G20530 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 9.0e-113
Identity = 225/307 (73.29%), Postives = 245/307 (79.80%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNR-----KEYDRRERD-------------------- 240
           RRKL+G     RRS  RSRS SPR+R     ++  RRERD                    
Sbjct: 181 RRKLYGGRS--RRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDG 240

Query: 241 YRDRD-YRGNG-----RSRERQDR--DGGRRRHGS-PRRSRSPVTAREGSEERRARIEQW 274
           YR  D YRG G         R DR  DGGRRRHGS PRR+RSPV  RE SEERRA+IEQW
Sbjct: 241 YRGGDSYRGGGGGGRRGGGSRYDRYDDGGRRRHGSPPRRARSPV--RESSEERRAKIEQW 300

[Close]

BLAST of Clc11G20530 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.0e-108
Identity = 213/293 (72.70%), Postives = 234/293 (79.86%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           G+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL+VCDN ADHMIGNVYVQFREED
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSP---RNRKEYDR----RERDYRD------RDY------ 240
           R++LFG     RRS S  RS SP     R++YDR    R RD+ D       DY      
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGGSHDYYRGGSR 240

Query: 241 RGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ 275
           R + R R   D DG RRRH S  R+RSPV  R+GSEERRA+IEQWNRERE  Q
Sbjct: 241 RSSERHRSSYDSDGSRRRHRS--RTRSPV--RDGSEERRAQIEQWNREREAAQ 289

[Close]

BLAST of Clc11G20530 vs. ExPASy Swiss-Prot
Match: Q01081 (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-65
Identity = 130/242 (53.72%), Postives = 170/242 (70.25%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLNVCDNLADHMIGNVYVQFREE 120
             D     +   ++QEH+++F+E+++ E+  K+GE+E +NVCDNL DH++GNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 180
           + A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRR 240
           LRR+L+GR R   RSRSRSR    R+R   DR           G GR R+R+ R   R R
Sbjct: 181 LRRELYGRRRKKHRSRSRSRERRSRSR---DRGRGGGGGGGGGGGGRERDRR-RSRDRER 238

Query: 241 HG 242
            G
Sbjct: 241 SG 238

[Close]

BLAST of Clc11G20530 vs. ExPASy TrEMBL
Match: A0A5A7VFL1 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00280 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.0e-147
Identity = 268/276 (97.10%), Postives = 271/276 (98.19%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLSPRNRKEYDRRERDYR+R+YRGNGRS+ER DRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240

Query: 241 GSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ 275
           GSPR  RSRSPV AREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Clc11G20530 vs. ExPASy TrEMBL
Match: A0A1S3BUN6 (splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC103493856 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.0e-147
Identity = 268/276 (97.10%), Postives = 271/276 (98.19%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLSPRNRKEYDRRERDYR+R+YRGNGRS+ER DRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240

Query: 241 GSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ 275
           GSPR  RSRSPV AREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Clc11G20530 vs. ExPASy TrEMBL
Match: A0A0A0L4P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664540 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.7e-146
Identity = 267/276 (96.74%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLSPRNRKE+DRRERDYRDRDYRGNGRS+ER DRDGGRRR 
Sbjct: 181 RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ 240

Query: 241 GSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ 275
           GSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Clc11G20530 vs. ExPASy TrEMBL
Match: A0A6J1CN17 (splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC111012985 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.4e-145
Identity = 266/276 (96.38%), Postives = 270/276 (97.83%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRE---RQDRDGGR 240
           RRKLFGRYRGYRRSRSRSRSLSPRNRK+YDRRERD+RDRD+RGNGRS+E   R DRDGGR
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240

Query: 241 RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEK 274
           RRHGSPRRSRSPV  REGSEERRARIEQWNREREEK
Sbjct: 241 RRHGSPRRSRSPV--REGSEERRARIEQWNREREEK 274

[Close]

BLAST of Clc11G20530 vs. ExPASy TrEMBL
Match: A0A6J1IV82 (splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111480904 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 4.6e-144
Identity = 266/278 (95.68%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRE---RQDRDGG 240
           RRKLFG R+RGYRRSRSRSRSLSPRNRK+YDRRERDYRDRD+RGNGRS+E   R DRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ 275
           RRRHGSPRRSRSPV  REGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPV--REGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Clc11G20530 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 454.9 bits (1169), Expect = 4.6e-128
Identity = 238/281 (84.70%), Postives = 253/281 (90.04%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRY-RGYRR-SRSRSRSLSPRNRKEYDR-RER-DYRDRDYRGNGR----SRERQD 240
           RRKLFGRY R YRR SRSRSRS+SPR ++E+ R RER D RDRD  GNG+      ER D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREE 273
           RD GGRRRHGSP+RSRSP   REGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Clc11G20530 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 454.9 bits (1169), Expect = 4.6e-128
Identity = 238/281 (84.70%), Postives = 253/281 (90.04%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRY-RGYRR-SRSRSRSLSPRNRKEYDR-RER-DYRDRDYRGNGR----SRERQD 240
           RRKLFGRY R YRR SRSRSRS+SPR ++E+ R RER D RDRD  GNG+      ER D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREE 273
           RD GGRRRHGSP+RSRSP   REGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Clc11G20530 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 451.1 bits (1159), Expect = 6.6e-127
Identity = 239/292 (81.85%), Postives = 259/292 (88.70%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRY-RGYR---RSRSRSRSLSPRNRKEYDR-----RERDYRDRD---YR-GNGR- 240
           RRKLFGRY R YR   RSRSRSRS+SPRN+++ DR     RE  +RDRD   YR G+G+ 
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 ---SRERQDRDGGR-RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ 275
                ERQ+RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of Clc11G20530 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 342.4 bits (877), Expect = 3.3e-94
Identity = 189/242 (78.10%), Postives = 209/242 (86.36%), Query Frame = 0


Query: 51  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIG 110
           MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIG
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
           NVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKEYDR-----RERDYRDRD- 230
           MHVK++ ++LRRKLFGRY R YR   RSRSRSRS+SPRN+++ DR     RE  +RDRD 
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180

Query: 231 --YR-GNGR----SRERQDRDGGR-RRHGSPRRSRSPVTAREGSEERRARIEQWNREREE 275
             YR G+G+      ERQ+RDG R RR  SP+R  SP   REGSEERRARIEQWNREREE
Sbjct: 181 EFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREE 240

[Close]

BLAST of Clc11G20530 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 125.9 bits (315), Expect = 4.8e-29
Identity = 96/291 (32.99%), Postives = 147/291 (50.52%), Query Frame = 0


Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQA 128
               + +  +E+FYED++ E  K+GE+ +  VC N + H+ GNVYV +R  + A  A Q+
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR--- 188
           + GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D     
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWAD 416

Query: 189 -------------RKLFG----RYRGYRRSRSRSRS---LSPRNRKEYDRRER------- 248
                          LFG    ++  +  S S + S   LS  + ++  RR R       
Sbjct: 417 HDRPPPRFWIHKMTSLFGYSDEKHMEHESSGSLNDSISDLSTDSHRQPSRRSRSRDHDHA 476

Query: 249 ------DYRDRDYRGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEER 260
                  YR R Y G+ +   R+D+    RRH           +R+GS ER
Sbjct: 477 NVGSTPSYRSRKYHGDTQDSTREDK---LRRHAENCHDGDDSPSRDGSLER 522

The following BLAST results are available for this feature:

BLAST of Clc11G20530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900064.1	1.4e-150	98.91	splicing factor U2af small subunit B-like [Benincasa hispida]	[more]
XP_008453027.1	4.1e-147	97.10	PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >KAA0064675....	[more]
XP_004145565.1	3.5e-146	96.74	splicing factor U2af small subunit B [Cucumis sativus] >KGN55547.1 hypothetical ...	[more]
XP_022142994.1	5.0e-145	96.38	splicing factor U2af small subunit B-like [Momordica charantia]	[more]
XP_023525325.1	9.5e-144	95.68	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_02352...	[more]

BLAST of Clc11G20530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMY5	6.4e-127	84.70	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q9S709	9.2e-126	81.85	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q6AUG0	9.0e-113	73.29	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9ZQW8	1.0e-108	72.70	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q01081	1.1e-65	53.72	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF1 PE=1 SV=3	[more]

BLAST of Clc11G20530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFL1	2.0e-147	97.10	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BUN6	2.0e-147	97.10	splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC10349385...	[more]
A0A0A0L4P8	1.7e-146	96.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664540 PE=4 SV=1	[more]
A0A6J1CN17	2.4e-145	96.38	splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1IV82	4.6e-144	95.68	splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of Clc11G20530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42820.2	4.6e-128	84.70	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	4.6e-128	84.70	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	6.6e-127	81.85	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G27650.2	3.3e-94	78.10	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	4.8e-29	32.99	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 256..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..239
None	No IPR available	PANTHER	PTHR12620:SF35	SPLICING FACTOR U2AF SMALL SUBUNIT A	coord: 1..274
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 4.36089E-61 score: 186.416
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 18..37 score: 85.68 coord: 165..177 score: 63.29 coord: 103..125 score: 65.61 coord: 37..57 score: 62.34 coord: 75..90 score: 54.26 coord: 130..154 score: 63.64
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..274
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.0087 score: 25.3 coord: 13..39 e-value: 0.0068 score: 25.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 150..174 e-value: 1.4E-4 score: 21.7 coord: 14..38 e-value: 2.8E-7 score: 30.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 11.413015
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 13.065497
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 73..142 e-value: 1.5E-4 score: 31.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..139 e-value: 1.2E-7 score: 31.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..146 score: 11.05946
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 8.1E-31 score: 108.4
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 77..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G20530.1	Clc11G20530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0030628	pre-mRNA 3'-splice site binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding