Clc11G09820 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G09820
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr11: 12641524 .. 12642792 (-)
RNA-Seq ExpressionClc11G09820
SyntenyClc11G09820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTTCTTTGGTGATCGGCCTTTAGGTTTGTTTTTCTTCGTGGATGATCAGCCTTTGGGCCTGTTGATCTTCTTGGATGATCAGCCTTTGGGTTTGTTGATGTTGATCTTCTTGGATGATCGCCTTTGGGTTTGTTGATCTTCTTGGGTTCTTGGGTGATCGGCCTTTGGGCTTGATAATCTTCTTGGGTGATCAGTCTTTAGGCTTGTTGATCGACTTTTGGAGTTTCTGACTTCAAGAGCTTCAGAGAAAGTCTTCTGAATGTCCTTTAAGCTTTTGTCTTTAAATCCTCAAGAGAGTTATACTCTTCGGAGCTTATTTTTCAGAGCTTATTTTTCAGATCTTTTGAGTTGAGGGGGTTGTGTTCTTCGGATATTTAGAGCTTGATTATAACTTCAAGGTCTTGGAATCTTCAAGATTTCGTCTTCCGAGCTTCAGAGCATTAGCGCTCCATTGTCAATGCTTCCAAATCCCCCCAAATGAAGAGATAAATGGGCCTTCATGGGCTTGGGCCCAATATCTTCTTTGGCAAAAAGAAAAAAAATCACAATGTACTTAAATTGGGTTAGGTTTTTGACCTGAGCGACTTTAATTACTCGGCCCAATTTGATTTATAAATTCCACAATGCATTTGGACTTTGTTATGATGACATAGTAAAATTTGGTTGGCCGAAATTTCTCATTCAACATGGTGTTTATAGGCTTAATTAAAAAAAAAACAAAAAACAAAAATTGAAATGATTACGAAATTTAAAATTTTGGAAACTGAGATCAACCAAATATTAAAGTTCAGTAACCAAATTAATTTTAATCCACATGAAATCACTTTTGAGTTTAATAATAATTGAAGTGGATCCATCTAAAGAAAATAATGTATGAGGTGGAGAATTAAAGTATTTAACCAAATAATTGATGATGCATATTGTATGTCAATGGTAAACTATGCTCGATTTAATCCAATATTTATTATTTATTGAAATGACTAAAACTAAATTATTAAATTTAACGTAATATTTGGTTTGAAAGTGAATTAAAAAAGAAAAGAAAAAAACTAAAAAACTGCAGTTTGCCATCACATACATAACGAAATATTAATTTCTTGGGAAAACACGAAGATCCAAAAATTACCGATTTGCTCAAAATCAGAGTGGAGAGGTGAGATCTAGCAGAGCTCGCTGCTGCTTTTTCCTCTCTCCTTCAATTGAATTGCGACGTGATGAAGATGGAGTTGGAGCAGAAACAATGGTTCTGCTTGAGCTGAGGTAG

mRNA sequence

ATGATCTTCTTTGGTGATCGGCCTTTAGGTTTGTTTTTCTTCGTGGATGATCAGCCTTTGGGCCTGTTGATCTTCTTGGATGATCAGCCTTTGGGTTTGTTGATGTTGATCTTCTTGGATGATCGCCTTTGGAGTGGAGAGGTGAGATCTAGCAGAGCTCGCTGCTGCTTTTTCCTCTCTCCTTCAATTGAATTGCGACGTGATGAAGATGGAGTTGGAGCAGAAACAATGGTTCTGCTTGAGCTGAGGTAG

Coding sequence (CDS)

ATGATCTTCTTTGGTGATCGGCCTTTAGGTTTGTTTTTCTTCGTGGATGATCAGCCTTTGGGCCTGTTGATCTTCTTGGATGATCAGCCTTTGGGTTTGTTGATGTTGATCTTCTTGGATGATCGCCTTTGGAGTGGAGAGGTGAGATCTAGCAGAGCTCGCTGCTGCTTTTTCCTCTCTCCTTCAATTGAATTGCGACGTGATGAAGATGGAGTTGGAGCAGAAACAATGGTTCTGCTTGAGCTGAGGTAG

Protein sequence

MIFFGDRPLGLFFFVDDQPLGLLIFLDDQPLGLLMLIFLDDRLWSGEVRSSRARCCFFLSPSIELRRDEDGVGAETMVLLELR
Homology
[Close]
BLAST of Clc11G09820 vs. NCBI nr
Match: WP_217833387.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-05
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 2  IFFGDRPLGLFFFVDDQPLGLLIFLDDQPLGLL---------MLIFLDDR 43
          IF  DRPLGL  F+DD+PLGL+IF  D+PLGLL         +LIFLDDR
Sbjct: 1  IFLDDRPLGLLIFLDDRPLGLMIFFGDRPLGLLTCLDDRPLGLLIFLDDR 50

The following BLAST results are available for this feature:
BLAST of Clc11G09820 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_217833387.13.1e-0560.00hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
BLAST of Clc11G09820 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G09820 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G09820 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G09820.1Clc11G09820.1mRNA