Clc11G09090 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAGGAATCGACAATGGAAGAAGAAGGGAGAAAGAAGGGACCAAATCGAGAACGGAAGAAGAAGGGAGGAAGAAGAAGGGACGGAATCAAAGAGGTGAGCTTTTTTAATTGAATTTTTGTAGAAAAATTGAAAATGGGCTTGATGGGAGAAGAAGGGATGGAATTGAGAATGCGGTTTGAGTCAGAAAGAAAATGGGTCGGATGTCATTTTTAGTCTTTTCAGACATTTGGGCCTAAATTTGTTCTATATTTGCAATTATTTTTCCTTGGTTTTATAAATCCTAATATTTTTGGGTTGATGGCTATCTATGCAAGCAGCCCATCTTTCTTTGGTCAGTAAATTATTGTAATAAAGCCAATGGGGCAATTGTTGATTTCGAATCTTTATAAAACTTTACTTTTGTAGCATCTGGCTTAGCCACACAACACATGATTATCTTAGCTTTCATTTTAATAAATAAAAACTAGTTTGATTAAGGAAAATTTGTATGGATAACTAAAAAATATGGCCTAAAATGCTAAATGGTCTAGATTTTCAAAAAATGTCAACTGATCCTTTGCTGGCATAAGAAGGAAAGAGAAAAAAAAATTCGCTGAGATTGGTTTGTCGGAGAAGTTGTGCCATCACCGGAGAAGAAGAAGGAACAAAGAAGAAAGAAATAAATAACAAATTAATAGTTTGACTCATTGGGCTATATTAAAAAAAAAAAAAAACATTATTCCTTTGATTTTATTCATAAGTTTATGCTTAACCATAGTTAACTCCATCGCCGTAAACTGTCAATTTATGTAGTTGCCTCCTCCGGAGTCAGTTCAATATCCTTCTACTTATGGCTGAATCTTTATCATCATCGTCGTTTCAACCCATTTCTACTCCGATCAATAATATTGCAGTTCAATATGATGTGTTCGTGAGTTTTCGAGGCGAAGATGTAAGAAATAATTTTGTTAGTCATCTTCAGGCAGCATTCGAACGCAAAGGAACCGCAACTTTTTTCGATGAAGAGCTCAAGAGAGGACAGCAAATTGCTCCCGCTCTTCTTAAAGCTATACACAACAATCTTCCATTTCATCGTCGTTTTCTCTGA ATGGAAAGGAATCGACAATGGAAGAAGAAGGGAGAAAGAAGGGACCAAATCGAGAACGGAAGAAGAAGGGAGGAAGAAGAAGGGACGGAATCAAAGAGTTGCCTCCTCCGGAGTCAGTTCAATATCCTTCTACTTATGGCTGAATCTTTATCATCATCGTCGTTTCAACCCATTTCTACTCCGATCAATAATATTGCAGTTCAATATGATGTGTTCGTGAGTTTTCGAGGCGAAGATGTAAGAAATAATTTTGTTAGTCATCTTCAGGCAGCATTCGAACGCAAAGGAACCGCAACTTTTTTCGATGAAGAGCTCAAGAGAGGACAGCAAATTGCTCCCGCTCTTCTTAAAGCTATACACAACAATCTTCCATTTCATCGTCGTTTTCTCTGA ATGGAAAGGAATCGACAATGGAAGAAGAAGGGAGAAAGAAGGGACCAAATCGAGAACGGAAGAAGAAGGGAGGAAGAAGAAGGGACGGAATCAAAGAGTTGCCTCCTCCGGAGTCAGTTCAATATCCTTCTACTTATGGCTGAATCTTTATCATCATCGTCGTTTCAACCCATTTCTACTCCGATCAATAATATTGCAGTTCAATATGATGTGTTCGTGAGTTTTCGAGGCGAAGATGTAAGAAATAATTTTGTTAGTCATCTTCAGGCAGCATTCGAACGCAAAGGAACCGCAACTTTTTTCGATGAAGAGCTCAAGAGAGGACAGCAAATTGCTCCCGCTCTTCTTAAAGCTATACACAACAATCTTCCATTTCATCGTCGTTTTCTCTGA MERNRQWKKKGERRDQIENGRRREEEEGTESKSCLLRSQFNILLLMAESLSSSSFQPISTPINNIAVQYDVFVSFRGEDVRNNFVSHLQAAFERKGTATFFDEELKRGQQIAPALLKAIHNNLPFHRRFL Homology
BLAST of Clc11G09090 vs. NCBI nr
Match: XP_038876489.1 (disease resistance protein RLM3-like [Benincasa hispida] >XP_038876490.1 disease resistance protein RLM3-like [Benincasa hispida]) HSP 1 Score: 128.3 bits (321), Expect = 5.0e-26 Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0
BLAST of Clc11G09090 vs. NCBI nr
Match: RVW15031.1 (TMV resistance protein N [Vitis vinifera]) HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0
BLAST of Clc11G09090 vs. NCBI nr
Match: XP_024177746.1 (uncharacterized protein LOC112183608 [Rosa chinensis]) HSP 1 Score: 79.3 bits (194), Expect = 2.6e-11 Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 0
BLAST of Clc11G09090 vs. NCBI nr
Match: PRQ38442.1 (putative TIR domain-containing protein [Rosa chinensis]) HSP 1 Score: 78.2 bits (191), Expect = 5.9e-11 Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 0
BLAST of Clc11G09090 vs. NCBI nr
Match: PON48345.1 (LOW QUALITY PROTEIN: TIR domain containing protein [Trema orientale]) HSP 1 Score: 78.2 bits (191), Expect = 5.9e-11 Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy Swiss-Prot
Match: V9M398 (Disease resistance protein RUN1 OS=Vitis rotundifolia OX=103349 GN=RUN1 PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.8e-13 Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy Swiss-Prot
Match: V9M2S5 (Disease resistance protein RPV1 OS=Vitis rotundifolia OX=103349 GN=RPV1 PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 4.2e-12 Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy Swiss-Prot
Match: F4JWM0 (Disease resistance-like protein DSC2 OS=Arabidopsis thaliana OX=3702 GN=DSC2 PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.0e-10 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy Swiss-Prot
Match: Q9FI14 (Disease resistance protein TAO1 OS=Arabidopsis thaliana OX=3702 GN=TAO1 PE=3 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 8.8e-10 Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy Swiss-Prot
Match: O82500 (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana OX=3702 GN=At4g11170 PE=2 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09 Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy TrEMBL
Match: A0A438BVL8 (TMV resistance protein N OS=Vitis vinifera OX=29760 GN=N_6 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 7.5e-12 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy TrEMBL
Match: A0A2P6QW67 (Putative TIR domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0413961 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11 Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy TrEMBL
Match: A0A2P5BHT4 (TIR domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_320860 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11 Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy TrEMBL
Match: A0A2P6Q5H1 (Putative winged helix-turn-helix DNA-binding domain, toll-like receptor OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0013881 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 3.7e-11 Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0
BLAST of Clc11G09090 vs. ExPASy TrEMBL
Match: A0A6P5TE95 (TMV resistance protein N-like OS=Prunus avium OX=42229 GN=LOC110766460 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 3.7e-11 Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0
BLAST of Clc11G09090 vs. TAIR 10
Match: AT3G04220.1 (Disease resistance protein (TIR-NBS-LRR class) family ) HSP 1 Score: 75.1 bits (183), Expect = 4.7e-14 Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 0
BLAST of Clc11G09090 vs. TAIR 10
Match: AT5G18370.1 (Disease resistance protein (TIR-NBS-LRR class) family ) HSP 1 Score: 67.8 bits (164), Expect = 7.4e-12 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0
BLAST of Clc11G09090 vs. TAIR 10
Match: AT1G69550.1 (disease resistance protein (TIR-NBS-LRR class) ) HSP 1 Score: 67.4 bits (163), Expect = 9.7e-12 Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 0
BLAST of Clc11G09090 vs. TAIR 10
Match: AT5G11250.1 (Disease resistance protein (TIR-NBS-LRR class) ) HSP 1 Score: 67.4 bits (163), Expect = 9.7e-12 Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of Clc11G09090 vs. TAIR 10
Match: AT5G44510.1 (target of AVRB operation1 ) HSP 1 Score: 64.7 bits (156), Expect = 6.3e-11 Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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