Clc11G07943 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07943
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L23, chloroplastic
LocationClcChr11: 7808928 .. 7809747 (-)
RNA-Seq ExpressionClc11G07943
SyntenyClc11G07943
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTGGAGTATCCTCAGGTTTCGGTATTGTTCCTCCAATGATTGTAGTACCAAGTACTTCTTGCCGAGCTCTAATATGATCAGATTTATAAGTAAGCACGGGCTCTTGCTGATACTACATCAGAGATTATTTTGTTGGGATGGTTACAACAAGATATGGGAGTCACTTTTTCTAGGCCTACTATTCTCATTTGTGACAACAAGAGTGCTATCCAAATAGCACACAATGTTGTGTTTCATGAGCGAACAAAACATATCGAAATAGCCAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCTGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

mRNA sequence

ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTGGAGTATCCTCAGGTTTCGGTAATAGCTATGAATAGTCATCGACTCCTGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

Coding sequence (CDS)

ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTGGAGTATCCTCAGGTTTCGGTAATAGCTATGAATAGTCATCGACTCCTGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

Protein sequence

MWALFLIEKGFNKKEIVGSKWTFKISMADCIPRTFLIEKVAWQGNDSVPKPKIVILERAIEKILEYPQVSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGREGVHVKYPLGIMSS
Homology
[Close]
BLAST of Clc11G07943 vs. NCBI nr
Match: KAF3946242.1 (hypothetical protein CMV_027466 [Castanea mollissima])

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-24
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGK 128
           V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQH C K
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHHCSK 104

Query: 129 GR 131
           GR
Sbjct: 105 GR 106

[Close]
BLAST of Clc11G07943 vs. NCBI nr
Match: TYI09250.1 (hypothetical protein ES332_A09G058600v1 [Gossypium tomentosum])

HSP 1 Score: 120.9 bits (302), Expect = 8.8e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 74  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]
BLAST of Clc11G07943 vs. NCBI nr
Match: TYI09266.1 (hypothetical protein ES332_A09G060200v1 [Gossypium tomentosum])

HSP 1 Score: 120.9 bits (302), Expect = 8.8e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 74  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]
BLAST of Clc11G07943 vs. NCBI nr
Match: KAG5606025.1 (hypothetical protein H5410_027517 [Solanum commersonii])

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-21
Identity = 56/62 (90.32%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGK 128
           V VIAMNSHRL GK RRMGPIMGHTMHYRRMIITLQP  DSQVKSNPRNNLIYGQ RCGK
Sbjct: 45  VKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQP--DSQVKSNPRNNLIYGQRRCGK 104

Query: 129 GR 131
           GR
Sbjct: 105 GR 104

[Close]
BLAST of Clc11G07943 vs. NCBI nr
Match: KAG4119256.1 (hypothetical protein ERO13_D11G067360v2 [Gossypium hirsutum])

HSP 1 Score: 111.7 bits (278), Expect = 5.3e-21
Identity = 56/70 (80.00%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 74  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP-------------AVDSQVKSNPRNNLI 131
           MNSHRL GKGRRMGPIMGHTMHYRRMIITLQP             AVDSQVKSNPRNNLI
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRTTRNGAVDSQVKSNPRNNLI 60

[Close]
BLAST of Clc11G07943 vs. ExPASy Swiss-Prot
Match: A0A378 (50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]
BLAST of Clc11G07943 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]
BLAST of Clc11G07943 vs. ExPASy Swiss-Prot
Match: Q06GT3 (50S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]
BLAST of Clc11G07943 vs. ExPASy Swiss-Prot
Match: A0ZZ77 (50S ribosomal protein L23, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]
BLAST of Clc11G07943 vs. ExPASy Swiss-Prot
Match: Q2L943 (50S ribosomal protein L23, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]
BLAST of Clc11G07943 vs. ExPASy TrEMBL
Match: A0A5D2P0J4 (50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES332_A09G060200v1 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 74  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]
BLAST of Clc11G07943 vs. ExPASy TrEMBL
Match: A0A5D2P3Y3 (50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES332_A09G058600v1 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 74  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]
BLAST of Clc11G07943 vs. ExPASy TrEMBL
Match: A0A5D2D6S0 (50S ribosomal protein L2, chloroplastic OS=Gossypium darwinii OX=34276 GN=ES288_D03G093400v1 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-20
Identity = 54/70 (77.14%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 74  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP-------------AVDSQVKSNPRNNLI 131
           MNSHRL GKG R+GPIMGHTMHYRRMIITLQP             AVDSQVKSNPRNNLI
Sbjct: 1   MNSHRLPGKGTRLGPIMGHTMHYRRMIITLQPGYSIPPLRTTRNGAVDSQVKSNPRNNLI 60

[Close]
BLAST of Clc11G07943 vs. ExPASy TrEMBL
Match: A0A411K5D6 (Ribosomal protein L2 OS=Rhabdodendron amazonicum OX=63102 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 59/97 (60.82%), Postives = 59/97 (60.82%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP----------------------- 128
           V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP                       
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRTEIKILNSMAIH 104

Query: 129 ------------AVDSQVKSNPRNNLIYGQHRCGKGR 131
                       AVDSQVKSNPRNNLIYGQ RCGKGR
Sbjct: 105 LYKTSTPSTRNGAVDSQVKSNPRNNLIYGQRRCGKGR 141

[Close]
BLAST of Clc11G07943 vs. ExPASy TrEMBL
Match: A0A2G9G6U0 (Mitochondrial/chloroplast ribosomal protein L2 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26471 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.1e-19
Identity = 54/75 (72.00%), Postives = 55/75 (73.33%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITL-------------QPAVDSQVKSNP 128
           V VIAMNSHRL  KGRRMGPIMGHTMHYRRMIIT+                VDSQVKSNP
Sbjct: 45  VKVIAMNSHRLPVKGRRMGPIMGHTMHYRRMIITMAIHLYKTSTPSTRNGTVDSQVKSNP 104

Query: 129 RNNLIYGQHRCGKGR 131
           RNNLIYGQH CGKGR
Sbjct: 105 RNNLIYGQHHCGKGR 119

[Close]
BLAST of Clc11G07943 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRL GK +RMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQP 81

[Close]
BLAST of Clc11G07943 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 69  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRL GK +RMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQP 81

[Close]
BLAST of Clc11G07943 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 24/29 (82.76%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 102 TLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           T   AVDSQVKSNPRNNLI GQH CGKGR
Sbjct: 13  TRNGAVDSQVKSNPRNNLICGQHHCGKGR 41

[Close]
BLAST of Clc11G07943 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 24/29 (82.76%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 102 TLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           T   AVDSQVKSNPRNNLI GQH CGKGR
Sbjct: 13  TRNGAVDSQVKSNPRNNLICGQHHCGKGR 41

The following BLAST results are available for this feature:
BLAST of Clc11G07943 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3946242.13.0e-2493.55hypothetical protein CMV_027466 [Castanea mollissima][more]
TYI09250.18.8e-2498.25hypothetical protein ES332_A09G058600v1 [Gossypium tomentosum][more]
TYI09266.18.8e-2498.25hypothetical protein ES332_A09G060200v1 [Gossypium tomentosum][more]
KAG5606025.11.8e-2190.32hypothetical protein H5410_027517 [Solanum commersonii][more]
KAG4119256.15.3e-2180.00hypothetical protein ERO13_D11G067360v2 [Gossypium hirsutum][more]
BLAST of Clc11G07943 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0A3781.6e-1294.5950S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A P... [more]
Q4VZK61.6e-1294.5950S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A P... [more]
Q06GT31.6e-1294.5950S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl2... [more]
A0ZZ771.6e-1294.5950S ribosomal protein L23, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl2... [more]
Q2L9431.6e-1294.5950S ribosomal protein L23, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl23-... [more]
BLAST of Clc11G07943 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D2P0J44.3e-2498.2550S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES33... [more]
A0A5D2P3Y34.3e-2498.2550S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES33... [more]
A0A5D2D6S02.9e-2077.1450S ribosomal protein L2, chloroplastic OS=Gossypium darwinii OX=34276 GN=ES288_... [more]
A0A411K5D61.4e-1960.82Ribosomal protein L2 OS=Rhabdodendron amazonicum OX=63102 GN=rpl2 PE=3 SV=1[more]
A0A2G9G6U04.1e-1972.00Mitochondrial/chloroplast ribosomal protein L2 OS=Handroanthus impetiginosus OX=... [more]
BLAST of Clc11G07943 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00840.16.3e-1286.49ribosomal protein L23.1 [more]
ATCG01300.16.3e-1286.49ribosomal protein L23 [more]
ATCG00830.13.6e-0782.76ribosomal protein L2 [more]
ATCG01310.13.6e-0782.76ribosomal protein L2 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 65..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07943.1Clc11G07943.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0009536 plastid
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity