Clc11G07680 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07680
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionS4 RNA-binding domain-containing protein
LocationClcChr11: 7724079 .. 7726484 (+)
RNA-Seq ExpressionClc11G07680
SyntenyClc11G07680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGAGCGTATTAGTTAACCTCTCTTTGTTTAGGGTCAGCTCTCTTCTTTCGACATAAGACCATAGTAAAAAAAGAGTGTTTGTTCTTGTATTTAAGGTCAATCCTTGGATACTAAGACTAAGCGTACTTCCAATTATCTTCACTGCAGATAATAAAGAAAAACGGCTGCTGCAACTACAGGTGAAAGTGGCACGGGTCTTGTATGATGGAGACAAAATTACCAGAATCAAAAGGTAGAAAGCTACGGTTTAGTAGTGAGGTGGGGAAGTTCTTCCATTCCAAGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGTAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCCCCGGTCAGCCATACGGCGGTGAATTCGGCGCAGGCAGGGAACCCTATCCAAGGCCAAGGTGCTGGTCTCGATCTCGCTTGGTGGTGCCCCTCTCGATGATTGTTGACTCAACATTGATTTCGTGCTTAAGTTGGGGGGCCCTCCCTCCATCCATTGAGTCAAGTAATTCGCTATCGGAAATTTGTCCGTCCTCAGGGTATGCGACTAGACCTGCAAGCCTCTTTTATTCTTGTTCTGAGGGAAAATAGTTCATAATAGGCAACCTCCATCCGTCATTAGTAATCTCAATCCGCTTTTCCTATTCACTAGTACACTGCGCGCTAAAACAAAACGGGAAGCCCCTCCTTTCTTATTATATTATTAGGTTGATTGGTTTGGAACCCTATACAAGGGGCTGCTTGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGTGAAACAAGATAAAATCGTATATCGAAACGACTTCTGGCATCACCGGAAGGATCGAAACCACATTCATAGGCCGACAATTTTTCTGGATAGGTTGAACTATTAGAAGCAAATGGAAAAGGAACACCGAGTGGGATCAAAGAAACTAGCGGAAGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGTATAAAAATTTGGATATTTGTAGACGAACAATAATAAGCCCTTACTCAACTTGTGTTTACGTTTTAGTCAATGATCGACCAAGAAATGACAAATCAGTCTTTTTCGTTTAAATAAAAAATGAGCAATTCTATAAGGTTAAATAAAAATGAAATTAATCATTTGAGATAATTGCTATGCTTAGTGTGCGACTCGTCGGTTTTTTTAAGGTTAGGATTAAAACCAAAAAGAAGGATCAGCTCATACATAATCTGAACTAATAATTATAAAACTAATAACCAACTCATCGCTTCGCATTATCTGGATCTAAAAAACCAACCAGTCAAGATATGTTATATTGGTCATATCATTGTAGCAACTGAAATCTTTTTTGCATAAAAAAAAAAAACAATCCGATTATGAGTTGTGAAGCAATAAAAGTATGCGGATAAATGGAAGGGTGAAAGAAAGAGAGAAAAAGAATATGAATGATATATGATTCCAATATGTAATATGTAAGGTCTATGGGTCATCTCATAAAAGGTAGTGTAATAAAGCATTAAGACTGATGGATTCATAATTAGATGAATCTGTTCATAGAACAAAAAAGCCAAGAGCCCCGAGACAATAAAGACTGAGAAGATTGACTCAAAAACAAATTTTATTACGGGCTCCATTGTAGAATTAAGACCTAACCATTAATCGAGAGGCGATGGGAACGAGGGAACCCGTGAATACATAATATTCTATTGAAAACGAATCCTAATAATTCATTGGGTAGGATGGCAGAAGGAACCCAAGAAGCCAAAACCGAACAAGCAAGGCCAAAGCCAAATGCCGACCTAAGAAGGACGCTTGCGGGAGAGTTTCGAGTTTCCCGACAGGTCGATGTACAACCGACAGGTGAATGCTTTACCAAACTCGTGTACAACTCCTTGAATGTGTATTGATTTTCGCCCCCGAGCTTGTGGTCCTCCTTTTAGTGTGGGTTCAATTGGATGAATCTGTTAAGTCAAGGTCAACGTACGTAGCTGCAAGGATGGTGCATCGCCTATTTCTCGTTCTCGCTCGGGAGCCAAAACGAAAACGCCTGCTACCTACTGTACTGGACCTTCGACCAGGTATTCGACCCTTGTCGAATCGGAACCAACCACCCCACTCTAATAATAGGAGAAAGGAAAACGCTCGAACAGTTGAGCGGCCGCCCGTCTCGAAGATGATAGAGGGCCAATTATCGTTGCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATCTGA

mRNA sequence

ATGGTCGAGCATAATAAAGAAAAACGGCTGCTGCAACTACAGGTGAAAGTGGCACGGGTCTTGTATGATGGAGACAAAATTACCAGAATCAAAAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCCCCGGTCAGCCATACGGCGGTGAATTCGGCGCAGGCAGGGAACCCTATCCAAGGCCAAGGTGCTGGTCTCGATCTCGCTTGGTGGTGCCCCTCTCGATGATTGTTGACTCAACATTGATTTCGTGCTTAAGTTGGGGGGCCCTCCCTCCATCCATTGAGTCAAGTAATTCGCTATCGGAAATTTGTCCGTCCTCAGGGATGGCAGAAGGAACCCAAGAAGCCAAAACCGAACAAGCAAGGCCAAAGCCAAATGCCGACCTAAGAAGGACGCTTGCGGGAGAGTTTCGAGTTTCCCGACAGGTCGATGTACAACCGACAGTGTGGGTTCAATTGGATGAATCTGTTAAGTCAAGGTCAACGTACGTAGCTGCAAGGATGGTGCATCGCCTATTTCTCGTTCTCGCTCGGGAGCCAAAACGAAAACGCCTGCTACCTACTGTACTGGACCTTCGACCAGGTATTCGACCCTTGTCGAATCGGAACCAACCACCCCACTCTAATAATAGGAGAAAGGAAAACGCTCGAACAGTTGAGCGGCCGCCCGTCTCGAAGATGATAGAGGGCCAATTATCGTTGCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATCTGA

Coding sequence (CDS)

ATGGTCGAGCATAATAAAGAAAAACGGCTGCTGCAACTACAGGTGAAAGTGGCACGGGTCTTGTATGATGGAGACAAAATTACCAGAATCAAAAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCCCCGGTCAGCCATACGGCGGTGAATTCGGCGCAGGCAGGGAACCCTATCCAAGGCCAAGGTGCTGGTCTCGATCTCGCTTGGTGGTGCCCCTCTCGATGATTGTTGACTCAACATTGATTTCGTGCTTAAGTTGGGGGGCCCTCCCTCCATCCATTGAGTCAAGTAATTCGCTATCGGAAATTTGTCCGTCCTCAGGGATGGCAGAAGGAACCCAAGAAGCCAAAACCGAACAAGCAAGGCCAAAGCCAAATGCCGACCTAAGAAGGACGCTTGCGGGAGAGTTTCGAGTTTCCCGACAGGTCGATGTACAACCGACAGTGTGGGTTCAATTGGATGAATCTGTTAAGTCAAGGTCAACGTACGTAGCTGCAAGGATGGTGCATCGCCTATTTCTCGTTCTCGCTCGGGAGCCAAAACGAAAACGCCTGCTACCTACTGTACTGGACCTTCGACCAGGTATTCGACCCTTGTCGAATCGGAACCAACCACCCCACTCTAATAATAGGAGAAAGGAAAACGCTCGAACAGTTGAGCGGCCGCCCGTCTCGAAGATGATAGAGGGCCAATTATCGTTGCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATCTGA

Protein sequence

MVEHNKEKRLLQLQVKVARVLYDGDKITRIKRLQLACMKPESLVIPGQPYGGEFGAGREPYPRPRCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSEICPSSGMAEGTQEAKTEQARPKPNADLRRTLAGEFRVSRQVDVQPTVWVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPVSKMIEGQLSLRCTRRCRLTSSAFLRSQI
Homology
[Close]
BLAST of Clc11G07680 vs. NCBI nr
Match: QHN95475.1 (ATP synthase protein [Arachis hypogaea])

HSP 1 Score: 105.1 bits (261), Expect = 8.8e-19
Identity = 59/77 (76.62%), Postives = 61/77 (79.22%), Query Frame = 0 

Query: 152 VWVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHS 211
           VWV LDES+KSR TY+AARMV RLFLVLAREPKR RLLPTVLD RPGI PLSNRNQPP  
Sbjct: 38  VWVPLDESLKSRFTYIAARMVQRLFLVLAREPKRTRLLPTVLDPRPGILPLSNRNQPP-- 97

Query: 212 NNRRKENARTVERPPVS 229
                  ARTVERPP S
Sbjct: 98  ----LYCARTVERPPAS 108

[Close]
BLAST of Clc11G07680 vs. NCBI nr
Match: GEU50674.1 (putative reverse transcriptase domain, ribonuclease H-like domain protein [Tanacetum cinerariifolium])

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-14
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 153  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS 204
            WVQLDES+KSRSTYVAARMVHRLFLVLA EPK+ RLLPTVLDLRPGI P S
Sbjct: 1343 WVQLDESIKSRSTYVAARMVHRLFLVLAWEPKQTRLLPTVLDLRPGILPFS 1393

[Close]
BLAST of Clc11G07680 vs. NCBI nr
Match: KAB8477456.1 (hypothetical protein FH972_025322 [Carpinus fangiana])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 57/109 (52.29%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 56  AGREPYPR------PRCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSE---- 115
           AG EPY R       RCWSRSRLVVPLSMIVDSTLISCLSW ALPPSIESSNSLSE    
Sbjct: 245 AGLEPYTRDFSPTYTRCWSRSRLVVPLSMIVDSTLISCLSWRALPPSIESSNSLSEKFPP 304

Query: 116 --ICPSSGMAEGTQEAKTEQARPKPNADLRRTLAGEFRVSRQVDVQPTV 153
              C +S  +E        +   K    L   L G  R SR   V  ++
Sbjct: 305 RISCHASSFSESVPSVSQSRFAIKRGKSLYFRLLGRSRHSRNSPVHRSI 353

[Close]
BLAST of Clc11G07680 vs. NCBI nr
Match: EXB45754.1 (hypothetical protein L484_003838 [Morus notabilis])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-11
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 171 MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPVSKM 230
           MVHRLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP         ARTVERPP S  
Sbjct: 1   MVHRLFIVLAREPKRTRLLPTVLDLRPGILPLSNRNQPP------LYCARTVERPPASNF 56

Query: 231 IE 233
           ++
Sbjct: 61  LQ 56

[Close]
BLAST of Clc11G07680 vs. NCBI nr
Match: GEV65044.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-10
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 65  RCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSEICP 109
           R WSRSRLVVPL +IVDSTLISCLSW ALPPSIESSNSLSEI P
Sbjct: 191 RGWSRSRLVVPLWIIVDSTLISCLSWRALPPSIESSNSLSEILP 234

[Close]
BLAST of Clc11G07680 vs. ExPASy TrEMBL
Match: A0A6L2KRZ9 (Putative reverse transcriptase domain, ribonuclease H-like domain protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_022652 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-14
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 153  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS 204
            WVQLDES+KSRSTYVAARMVHRLFLVLA EPK+ RLLPTVLDLRPGI P S
Sbjct: 1343 WVQLDESIKSRSTYVAARMVHRLFLVLAWEPKQTRLLPTVLDLRPGILPFS 1393

[Close]
BLAST of Clc11G07680 vs. ExPASy TrEMBL
Match: A0A5N6L0P7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025322 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.4e-14
Identity = 57/109 (52.29%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 56  AGREPYPR------PRCWSRSRLVVPLSMIVDSTLISCLSWGALPPSIESSNSLSE---- 115
           AG EPY R       RCWSRSRLVVPLSMIVDSTLISCLSW ALPPSIESSNSLSE    
Sbjct: 245 AGLEPYTRDFSPTYTRCWSRSRLVVPLSMIVDSTLISCLSWRALPPSIESSNSLSEKFPP 304

Query: 116 --ICPSSGMAEGTQEAKTEQARPKPNADLRRTLAGEFRVSRQVDVQPTV 153
              C +S  +E        +   K    L   L G  R SR   V  ++
Sbjct: 305 RISCHASSFSESVPSVSQSRFAIKRGKSLYFRLLGRSRHSRNSPVHRSI 353

[Close]
BLAST of Clc11G07680 vs. ExPASy TrEMBL
Match: W9QPI5 (Probable purine permease OS=Morus notabilis OX=981085 GN=L484_003838 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.1e-12
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 171 MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPVSKM 230
           MVHRLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP         ARTVERPP S  
Sbjct: 1   MVHRLFIVLAREPKRTRLLPTVLDLRPGILPLSNRNQPP------LYCARTVERPPASNF 56

Query: 231 IE 233
           ++
Sbjct: 61  LQ 56

[Close]
BLAST of Clc11G07680 vs. ExPASy TrEMBL
Match: A0A385G2D1 (Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp27 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-08
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 171 MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPP 210
           MV RLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP
Sbjct: 1   MVQRLFIVLAREPKRTRLLPTVLDLRPGILPLSNRNQPP 39

[Close]
BLAST of Clc11G07680 vs. ExPASy TrEMBL
Match: A0A6S7L336 (S4 RNA-binding domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS3414 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 171 MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQ 208
           MVHRLFLVLAREPKR RLLPTVLDLRPGI PLSNRNQ
Sbjct: 1   MVHRLFLVLAREPKRTRLLPTVLDLRPGILPLSNRNQ 37

The following BLAST results are available for this feature:
BLAST of Clc11G07680 vs. NCBI nr
Match NameE-valueIdentityDescription
QHN95475.18.8e-1976.62ATP synthase protein [Arachis hypogaea][more]
GEU50674.13.8e-1488.24putative reverse transcriptase domain, ribonuclease H-like domain protein [Tanac... [more]
KAB8477456.11.1e-1352.29hypothetical protein FH972_025322 [Carpinus fangiana][more]
EXB45754.11.0e-1172.58hypothetical protein L484_003838 [Morus notabilis][more]
GEV65044.14.4e-1088.64hypothetical protein [Tanacetum cinerariifolium][more]
BLAST of Clc11G07680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G07680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6L2KRZ91.9e-1488.24Putative reverse transcriptase domain, ribonuclease H-like domain protein OS=Tan... [more]
A0A5N6L0P75.4e-1452.29Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025322 PE=4 SV=1[more]
W9QPI55.1e-1272.58Probable purine permease OS=Morus notabilis OX=981085 GN=L484_003838 PE=3 SV=1[more]
A0A385G2D12.0e-0889.74Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp27 PE=4 S... [more]
A0A6S7L3363.4e-0894.59S4 RNA-binding domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOC... [more]
BLAST of Clc11G07680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..226

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07680.1Clc11G07680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0072530 purine-containing compound transmembrane transport
biological_process GO:0006863 purine nucleobase transport
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003723 RNA binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0022857 transmembrane transporter activity