
Clc11G06460 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAACCATCACCACCGAGAATGGTGCACTGTGGTCATTCGTGGCGGCTCAACTGGGGTGGCTACTTCTAGTCCTCCTCTGCAAGCTAGACACAAAAGCAAAGTCTTACATAGACGTATCATTATCGTATCCATTCTTAGCGAATAACTTGAATTTCACTGTCAAGATAGTGGTGAAGATGAATCTGAAGGTGCAAATTGGCAGCTACTGGGTGGCACACTACAGGTTTACCACGGCAAATCAAAGTAATGAACTCCTTGTCCGAGCTGGAAATAGCCTATTCAAGTTTTCAATTTTCAAAACTAGCATTTTTGTAAAAAAATTAGTTACAATAATTTTTCTTGGTTACCTAACTTTTTTTTATGTTATCTCGGTTGTTTTTGCTTTTTGGTGAAATCTACAATATTAACATGTAGATTTTGCCATTTTTTTCAAATATTAAATAGGGTAATTGGCAACATAGGCTCCTATCAGATAGAATCCTATAATCTATTACCAATAGACTCTACTATTGATTTGGTCTATTCTATAAATATTTTGCAACTACCTTTATTAAACAATCTTTCCAAAATCTATATCAAATCTTACTTAATTTTTCAAATCTTCTCCAAATTTGACTATCTCTATCAAATCTTACATAATTTTTCAAAATTTTAACCTAATTTGTGCGTTCCATAATTATATGAATTTCTAAATTTTCAAATTTATGAGTGAATTTACTAATTATAATTTTTCAAGTGGATCTCAAGTGCACTCTAATTTTTAAATTTTAGAAAAAATCAAAGTTTGTGAAAAGATTTGGAAAAATATAAAGAGTCTCGATATTAATCTGCCTAAGATTTCACTGAGAATCCAAATATATAGAATCTCGCTATTAATTCGACCCGCAAAATTAGATAAGATTTGATACAAATTTTGGAAAGATTATGGAAAGGTTGATAACAATAGAAAAAAAATAGATTTTTAAATAAATGTAGATGGTCAGAGTAAAAAAGTTAGTTTCACGAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTGAGGAGGCTATTTCTTGAAAATTTTCGGTGAGTTTCTGCCCGATTGAGTTGTCTTTCCTCGAAGCTTCAACGGATTCTATCCAACAAAGACACGAGGGAGTAGAGTCGCGGGAGAATGGGTAGAGGGAAATAGAGTCAAGAGAATAGTAAGGGTTCAATGGAACTAAAAAGTAAGAGGCTCTAAAAGGATTCATGATTTGAAATAAGAATTTTGAGCATGGTGTTGATAGTTTCTCGAGATTGAACAAGCTGGGAAGAAAGAAGAAGAAATGTTGTGTTAGTATGATTTTGAGGCCTTATTTTCCGAAAGTACTTTAGAGGAAGCAATGAGAAAGAGAGAAGGAGTTTGATCAATTAAGAAGGCATCGATGATAAACCTTGAAAGGCAATAAGATTGATACAAAGAATATTCTCAAATGATGGATTCATATTATGGTGACTTTTACTCCAATAAATAGAAATCTCAGATGGTGGATTGGATGCATCAAATTTGAAAGCCTTGCCGGTTGCTCATAATCATGTCTACACAAAATCTCAGATGGAGTTTTTGTTCAAAGAACCAAGTAACAAATTAACTCTTATAAAGTTATGGAGAGCCATTGAAGCAACAACAGTTTTTACTTGTTTGTCTAATTGA ATGGAAACCATCACCACCGAGAATGGTGCACTGTGGTCATTCGTGGCGGCTCAACTGGGGTGGCTACTTCTAGTCCTCCTCTGCAAGCTAGACACAAAAGCAAAGTCTTACATAGACGTATCATTATCGTATCCATTCTTAGCGAATAACTTGAATTTCACTGTCAAGATAGTGGTGAAGATGAATCTGAAGGTGCAAATTGGCAGCTACTGGGTGGCACACTACAGGTTTACCACGGCAAATCAAAAAATCTCAGATGGTGGATTGGATGCATCAAATTTGAAAGCCTTGCCGGTTGCTCATAATCATGTCTACACAAAATCTCAGATGGAGTTTTTGTTCAAAGAACCAAGTAACAAATTAACTCTTATAAAGTTATGGAGAGCCATTGAAGCAACAACAGTTTTTACTTGTTTGTCTAATTGA ATGGAAACCATCACCACCGAGAATGGTGCACTGTGGTCATTCGTGGCGGCTCAACTGGGGTGGCTACTTCTAGTCCTCCTCTGCAAGCTAGACACAAAAGCAAAGTCTTACATAGACGTATCATTATCGTATCCATTCTTAGCGAATAACTTGAATTTCACTGTCAAGATAGTGGTGAAGATGAATCTGAAGGTGCAAATTGGCAGCTACTGGGTGGCACACTACAGGTTTACCACGGCAAATCAAAAAATCTCAGATGGTGGATTGGATGCATCAAATTTGAAAGCCTTGCCGGTTGCTCATAATCATGTCTACACAAAATCTCAGATGGAGTTTTTGTTCAAAGAACCAAGTAACAAATTAACTCTTATAAAGTTATGGAGAGCCATTGAAGCAACAACAGTTTTTACTTGTTTGTCTAATTGA METITTENGALWSFVAAQLGWLLLVLLCKLDTKAKSYIDVSLSYPFLANNLNFTVKIVVKMNLKVQIGSYWVAHYRFTTANQKISDGGLDASNLKALPVAHNHVYTKSQMEFLFKEPSNKLTLIKLWRAIEATTVFTCLSN Homology
BLAST of Clc11G06460 vs. NCBI nr
Match: XP_004150962.1 (exocyst complex component EXO70H1 [Cucumis sativus] >KGN50010.2 hypothetical protein Csa_000379 [Cucumis sativus]) HSP 1 Score: 96.7 bits (239), Expect = 1.7e-16 Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0
BLAST of Clc11G06460 vs. NCBI nr
Match: XP_008461614.2 (PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1 [Cucumis melo]) HSP 1 Score: 95.5 bits (236), Expect = 3.9e-16 Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Clc11G06460 vs. NCBI nr
Match: KAA0062214.1 (exocyst complex component EXO70B1 [Cucumis melo var. makuwa]) HSP 1 Score: 95.5 bits (236), Expect = 3.9e-16 Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Clc11G06460 vs. NCBI nr
Match: XP_038892797.1 (exocyst complex component EXO70H1 [Benincasa hispida]) HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15 Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 0
BLAST of Clc11G06460 vs. NCBI nr
Match: XP_022993464.1 (exocyst complex component EXO70H1-like [Cucurbita maxima]) HSP 1 Score: 92.0 bits (227), Expect = 4.3e-15 Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0
BLAST of Clc11G06460 vs. ExPASy Swiss-Prot
Match: Q8VY27 (Exocyst complex component EXO70H1 OS=Arabidopsis thaliana OX=3702 GN=EXO70H1 PE=1 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0
BLAST of Clc11G06460 vs. ExPASy TrEMBL
Match: A0A0A0KLS1 (Exocyst subunit Exo70 family protein OS=Cucumis sativus OX=3659 GN=Csa_5G178700 PE=3 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 8.4e-17 Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0
BLAST of Clc11G06460 vs. ExPASy TrEMBL
Match: A0A5A7V4I5 (Exocyst subunit Exo70 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00100 PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.9e-16 Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Clc11G06460 vs. ExPASy TrEMBL
Match: A0A1S3CGE5 (Exocyst subunit Exo70 family protein OS=Cucumis melo OX=3656 GN=LOC103500176 PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.9e-16 Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Clc11G06460 vs. ExPASy TrEMBL
Match: A0A6J1K095 (Exocyst subunit Exo70 family protein OS=Cucurbita maxima OX=3661 GN=LOC111489463 PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15 Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0
BLAST of Clc11G06460 vs. ExPASy TrEMBL
Match: A0A6J1H0K0 (Exocyst subunit Exo70 family protein OS=Cucurbita moschata OX=3662 GN=LOC111458838 PE=3 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 6.0e-15 Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 0
BLAST of Clc11G06460 vs. TAIR 10
Match: AT2G28640.1 (exocyst subunit exo70 family protein H5 ) HSP 1 Score: 68.2 bits (165), Expect = 6.2e-12 Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 0
BLAST of Clc11G06460 vs. TAIR 10
Match: AT1G07725.1 (exocyst subunit exo70 family protein H6 ) HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11 Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 0
BLAST of Clc11G06460 vs. TAIR 10
Match: AT2G39380.1 (exocyst subunit exo70 family protein H2 ) HSP 1 Score: 64.3 bits (155), Expect = 8.9e-11 Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of Clc11G06460 vs. TAIR 10
Match: AT3G55150.1 (exocyst subunit exo70 family protein H1 ) HSP 1 Score: 61.2 bits (147), Expect = 7.5e-10 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0
BLAST of Clc11G06460 vs. TAIR 10
Match: AT5G59730.1 (exocyst subunit exo70 family protein H7 ) HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09 Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|