Clc11G06260 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G06260
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	HIG1 domain-containing protein
Location	ClcChr11: 6135005 .. 6135908 (+)
RNA-Seq Expression	Clc11G06260
Synteny	Clc11G06260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAAACCAAGGTCTATCCAAGGGCTGAGAATGGATGGGGGAAATTTTGAGAAGAAACCGGAAACGGAAAAGCCTCTTGTTTCCAAGAAAAACAGAGGAATGCTCCGTTGAATCAAGGGGCTGATGCCGATCTCTAATATTTCTATATATATATAAATAATGTTCTTGTCTTCATGCTTCCCTCCTCACTTCAAATCTTCACCTAATTTTTTCTTCTAGTAAACAACAACAACAACAATGGAAGCTATTCAAGCCTGGGTTTCAGATCACAAACTCACCACCGTTGGTTAGTATTACTACTCTTCTTCTTATCATCATCATCATCATCATCATCATCATTTTCCATTCTTTTTCTTTGCTCTCTTTTTAAAATGCCTTTTTCCTTATACATAGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCTTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCTAGGTAACTCTAAGAATTATAGGAACTCGACCAAGAATGAAGAAATGTATTTTTGGGTTTTCTAATTCTAATTCATAAATATTAATTTGGTTTGTAATAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCTGCCGTCTACCACTACTACGAGAACAAACTCGCCGGCGACCGATCGGAAGCTCCCGCTTCCCCTGGAGGGAAATGAAATGGATAAGCCGAGAATGGTATTCTAAAGGGATGAATCATTTTATGTAAATTAAATCAAGGATCTCGGTTACTCTGTGTTTTGCTACTCCTACTTAAGTAGTAGCATATATTTCACAAAATATTCAGAGGCCAATCTTAAAGCTAATTAAAGAGACTATGCAAAATTTCTAATACTATGCCGGTCGTGTGATTTTTTTTTTAA

mRNA sequence

GCAGAAACCAAGGTCTATCCAAGGGCTGAGAATGGATGGGGGAAATTTTGAGAAGAAACCGGAAACGGAAAAGCCTCTTGTTTCCAAGAAAAACAGAGGAATGCTCCGTTGAATCAAGGGGCTGATGCCGATCTCTAATATTTCTATATATATATAAATAATGTTCTTGTCTTCATGCTTCCCTCCTCACTTCAAATCTTCACCTAATTTTTTCTTCTAGTAAACAACAACAACAACAATGGAAGCTATTCAAGCCTGGGTTTCAGATCACAAACTCACCACCGTTGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCTTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCTAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCTGCCGTCTACCACTACTACGAGAACAAACTCGCCGGCGACCGATCGGAAGCTCCCGCTTCCCCTGGAGGGAAATGAAATGGATAAGCCGAGAATGGTATTCTAAAGGGATGAATCATTTTATGTAAATTAAATCAAGGATCTCGGTTACTCTGTGTTTTGCTACTCCTACTTAAGTAGTAGCATATATTTCACAAAATATTCAGAGGCCAATCTTAAAGCTAATTAAAGAGACTATGCAAAATTTCTAATACTATGCCGGTCGTGTGATTTTTTTTTTAA

Coding sequence (CDS)

ATGGAAGCTATTCAAGCCTGGGTTTCAGATCACAAACTCACCACCGTTGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCTTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCTAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCTGCCGTCTACCACTACTACGAGAACAAACTCGCCGGCGACCGATCGGAAGCTCCCGCTTCCCCTGGAGGGAAATGA

Protein sequence

MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASPGGK

Homology

[Close]

BLAST of Clc11G06260 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida])

HSP 1 Score: 157.5 bits (397), Expect = 5.0e-35
Identity = 79/85 (92.94%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVS+HKLTT+GALWASGIGASLAYTRSRT LKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQVWVSEHKLTTIGALWASGIGASLAYTRSRTLLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEAPASPGGK 86
          AAVYHYYE+KLAG RSEAPASPGGK
Sbjct: 61 AAVYHYYEDKLAGGRSEAPASPGGK 85

[Close]

BLAST of Clc11G06260 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-33
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLTT+GALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEAPASPGG 85
          AAVYHYY+NK+  DRSEAP   GG
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGG 84

[Close]

BLAST of Clc11G06260 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 8.0e-33
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLTT+GALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEA-PASPGGK 86
          AAVYHYY+NK   DRSEA P S GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of Clc11G06260 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-32
Identity = 77/88 (87.50%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS HKLT++GALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEAPAS---PGGK 86
          AAVYHYYENK AG RSEAP S   PGG+
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSAVVPGGQ 88

[Close]

BLAST of Clc11G06260 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 8.8e-32
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS HKLT++GALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEAPAS 82
          AAVYHYYENK AG RSEAP S
Sbjct: 61 AAVYHYYENKSAGVRSEAPTS 81

[Close]

BLAST of Clc11G06260 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLTT+GALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEAPASPGG 85
          AAVYHYY+NK+  DRSEAP   GG
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGG 84

[Close]

BLAST of Clc11G06260 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.9e-33
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLTT+GALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEA-PASPGGK 86
          AAVYHYY+NK   DRSEA P S GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of Clc11G06260 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.1e-27
Identity = 63/77 (81.82%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1   MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+WVS+HKLT++G LWASGIGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYENKLAGDRSE 78
           AAVYHYYE +L G+ SE
Sbjct: 98  AAVYHYYEKRL-GEPSE 113

[Close]

BLAST of Clc11G06260 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+Q+WVS+HKLT++G LWAS IGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSEHKLTSIGTLWASAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEAPASP 83
          AA YHYYE K AG++ +  ASP
Sbjct: 61 AAAYHYYE-KRAGEQGD-NASP 80

[Close]

BLAST of Clc11G06260 vs. ExPASy TrEMBL
Match: W9QXG0 (BTB/POZ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_012295 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAY-TRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVS+HKLT++GALWASGIGASLAY + SR+P KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYNSGSRSPTKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYENKLAGDRSEAPASP 83
          GAA+YHYYE ++    +E  ASP
Sbjct: 61 GAAIYHYYEKRVGEKDAENIASP 83

[Close]

BLAST of Clc11G06260 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 90.5 bits (223), Expect = 7.0e-19
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 2  EAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVSDHKL TVG LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYENK 71
          AV  YY++K
Sbjct: 69 AVVEYYDHK 77

[Close]

BLAST of Clc11G06260 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-17
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4  IQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ +HKL TVG LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYENK 71
            YY++K
Sbjct: 71 VEYYDHK 77

The following BLAST results are available for this feature:

BLAST of Clc11G06260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886475.1	5.0e-35	92.94	uncharacterized protein LOC120076661 [Benincasa hispida]	[more]
XP_004138401.1	2.7e-33	89.29	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
KAA0052029.1	8.0e-33	88.37	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]
KAG6578469.1	2.3e-32	87.50	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	8.8e-32	91.36	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc11G06260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G06260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	1.3e-33	89.29	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	3.9e-33	88.37	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A7J7I509	7.1e-27	81.82	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A5J5AU49	3.0e-25	76.83	HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 ...	[more]
W9QXG0	3.0e-25	75.90	BTB/POZ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_012295 PE...	[more]

BLAST of Clc11G06260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	7.0e-19	62.32	Hypoxia-responsive family protein	[more]
AT5G27760.1	2.9e-17	58.21	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 11..59 e-value: 2.2E-8 score: 34.1
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 19.233475
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..71 e-value: 2.0E-6 score: 29.5
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..70
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G06260.1	Clc11G06260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome