Clc11G06110 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G06110
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionChalcone-flavonone isomerase family protein
LocationClcChr11: 5999575 .. 6002698 (+)
RNA-Seq ExpressionClc11G06110
SyntenyClc11G06110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCCGTTTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAACCAGGTATCTATACATCGAACGTGAAATCCGTGGTTACATTTGGGGAGTACTTTGATTTTCTCACCGGTGATGAAATCTCCAAGGCAGATAGGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGCGCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCTCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCGGCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCGCCGTCGTATCGGCGTCGAGGAGGAGGCGGTGGGGACGGTCACGGTGGTGATCGGACTCCATCGTCATAGGAGCTGCTAACTACTTCAAAACAACAACAGGACTGATTCTGTCAGGTAATTTACTTTTAGATCTTGAACCTGTTTGATGAAATTCCACAGTGAAACTTGATAATTCAGAACTCTATAATTCGTTGAGGAGTGAATCGATCCACGAGAAAGATTGAAAGTAGAAAGTTCATATCCACTCATGTACCAATCAAACCCTTGTGTTCTCTGTTCCCACCTTCTAGCTTTCTCTTCTCTGGACCTTAATCAAAGCTCAACTGTAAAAGGGGGGGGCTTTGTTTTGATTCTGCCTGATCTGCCTTCAACTAGAAAGGACGATGAATGATGATTCTTTGAGAGTTAAATCAAACAGCTTTTAGGATTCCAACGAAGTTTCAAAGCATCTTACTAGTCACTCAAAAACCCAAAATACAAGAGCAGGTCAAAGAATAGTATCCATGGCTGCAAAAAGCTTGGTTTCCCATGGCAGACCTTCTGAGAGGAACCAGGATGAAACATCAAAAGAATAGAAAATCTCTTAGCCTCACAAAACCCAAGTCCCTTGTTAGAAACTGAGAACTCCCAGAAAGAATTTTCTTCTGGCCAAACAAGAGAGGAAGAAGAAAATTATAGAGGGGAAGTGGGGTTATTTGAATAGAAGTAAAAGAGAGAATTGAGTAGAATTAGAATATGGACAAGAAAATTAACAGCAAAAAAATGGGTATATTATACTGATACATAAAGTCTAAAGAGGGTGAGATGGGCAGGGCTAGACAATAATTAGAAAGAAATGGGTTGCATAATTAATTGAGAAGAAAAGAACAGAGACAAAAAACTAACCTGTAATGGTACCTGATCCCCGACTAATCAAAGATTAGACAATATAAATAAATGCTGATTCTGAGCACAAAATCCTTCTCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCTTTCAGCTTCAAAAGTTAAAGTAAGCTGTCACTTTGGGTTTGGACCAGTGGCAAATGTTCCAGCCAAAAGCTTTGTCTAGGTAAGATTTGATGTCCTAGGTTGGTTCGTAAGGTTTTAAGATTACAATACCTTCCCTTCCCCCCACATTAGTCGTTAATGGGTTAAGTTACAAAGTATTTTAGTTCAAATGGTCAAATTTAGTCGTTTACTTTCAATAAATCTTAAATTTAGGTTTTTTTTACAGTGATTATGTTTACAAAACTTATAGACATGATATAGACCGATTATGTTTACAAAACTTATAAACATAATATAGACCAAAGCATTTTATAGTATGGTAGGTTTGGCTTCACTTTCTTGAAATTAAAGGTTCTCAATAGATGAAGAATTCTTACCTGTCATTATAAAAAGAAAAAAGGATGATGTAACTGATTTTCTTAGAAGTTAACTATTACTTTATTGGAGAATATAAAACTTGTATAAAATAGTTGAATTTATGATGCTATGCAACTTTCTCTGTGATGTGTTTATTTTGAACAAGGTGGTATGTGTTCTTGGGAGTGATAATTCATTTGCGCGTTATATATCGATTTTCCTAGTTGGTTGTTAGAGGCTTACAAATTTGATTGTTCTGTTATTGCCTAAGAACTTAGTTCTAGTTCTAATCAGTAAAATTTTCTTGGCCATTCTTGGCCAAATTGACTAACGGTGGCAGTTGCAATTATATTATTAAGCTTTCAATTTTAAAAATTAAGCCCTCAAACTTATATAAGTATTAAAATTGGGTCAAATTGGACTTTTAAATTTATATATTTGTATAAATTGTAACATTTGTATAAGTTTGAGGGTTCAATTTTTTATCATTTGTGTGTTCAAATTCTACCATTATTGTAAGCTTGAGGATCCAATTTTAACACTTAGAAGTTTAGTGACCCAATTTTTACAATTGAAACCAATCTTTGGAAGTTTAGGGACCCAATTTTTACAATTGAAACCAATCTTTGGAAGTTTAGTGACCCATACTTCATGGTGATTTTTGCAATTAATTCTATTTTTTTCGTTTACAAAATAAATAAATAAAACAAAAACAAACAAACAAAAACAAGTGGTATCAGTCGGACAAGCTCGGAGTCATACTCATTGATTGATTGTCTTAATTTAACTATTAGACATTGGAGTGAAATTTTCCATAGAAGGGCAGTTTAGAATTTCTAGAAATTTTAAGATTTTACTTTATTTTGCAGCAAATTTTTTTCCATTGATGGTTAAACCTTTTTACTTTATTTTGCAGCAAATTGTGAGACGCAATTTTAGAGAGGAAGGATGAATTAGAATCTTCTCTCTAAATCTAAATTTGTATATGAAAAACATGTTTCTAAAAAAAGATCAATAATGATAGCGTTGGTAAAATCAATATGCCAATGAATATAGATGGAATTTTTTGTAATATAGAAGTATATAATATGATGACGGCTTAATTGATAAATTGTTAATTGTAAATTCTATTATAATTCAATTGATTAAGACATTATATGTTATTGACTAAGAGATTGACTATCTCATTTGTTAAAAATTAATTTTTTTTTTAATAGTTTGAATTAAAGTTAAAATTGATCCGTTTAAATTTATT

mRNA sequence

ATGGATTTCCGTTTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAACCAGGCAGATAGGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGCGCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCTCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCGGCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCGCCGTCGTATCGGCGTCGAGGAGGAGGCGGTGGGGACGGTCACGGTGGTGATCGGACTCCATCGTCATAGGAGCTGCTAACTACTTCAAAACAACAACAGGACTGATTCTGTCAGCAAATTGTGAGACGCAATTTTAGAGAGGAAGGATGAATTAGAATCTTCTCTCTAAATCTAAATTTGTATATGAAAAACATGTTTCTAAAAAAAGATCAATAATGATAGCGTTGGTAAAATCAATATGCCAATGAATATAGATGGAATTTTTTGTAATATAGAAGTATATAATATGATGACGGCTTAATTGATAAATTGTTAATTGTAAATTCTATTATAATTCAATTGATTAAGACATTATATGTTATTGACTAAGAGATTGACTATCTCATTTGTTAAAAATTAATTTTTTTTTTAATAGTTTGAATTAAAGTTAAAATTGATCCGTTTAAATTTATT

Coding sequence (CDS)

ATGGATTTCCGTTTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAACCAGGCAGATAGGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGCGCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCTCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCGGCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCGCCGTCGTATCGGCGTCGAGGAGGAGGCGGTGGGGACGGTCACGGTGGTGA

Protein sequence

MDFRLVGFRLQLPPILKPTVVRAVIDDMLDTTNGKPTRQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLPLDGAAVVSASRRRRWGRSRW
Homology
[Close]
BLAST of Clc11G06110 vs. NCBI nr
Match: KCW47523.1 (hypothetical protein EUGRSUZ_K01285 [Eucalyptus grandis])

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-18
Identity = 66/121 (54.55%), Postives = 75/121 (61.98%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANLRLQRRAHRTIE 97
           RQIG SV+ I    +DPYTATGIWR +   +PV A   A    VS  NLRLQR A RT+E
Sbjct: 25  RQIGHSVAGIFAAAADPYTATGIWRRSRLLSPVVASLAAACSGVSAPNLRLQRSAQRTME 84

Query: 98  LSPRAQINAQSNAARIITMFVSKLASLLYE-FRVLLPLD-----GAAVVSASR--RRRWG 151
           LSPRAQI+A S AAR+ITM VSKL SL+YE     +P       G    SASR  R RW 
Sbjct: 85  LSPRAQISAHSRAARMITMLVSKLVSLMYESVAAAVPFSPDASGGGPPRSASRNLRFRWS 144

[Close]
BLAST of Clc11G06110 vs. NCBI nr
Match: KAF7830868.1 (hypothetical protein G2W53_013201 [Senna tora])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-07
Identity = 39/57 (68.42%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 68  NPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASL 125
           NP AA   A    VSKANL L  RAH TIE +PRA I+AQS AA IITMFVSKLASL
Sbjct: 61  NPFAANLAAASSGVSKANLLLHLRAHLTIEFNPRAHISAQSKAASIITMFVSKLASL 117

[Close]
BLAST of Clc11G06110 vs. NCBI nr
Match: KXG33623.1 (hypothetical protein SORBI_3003G338600 [Sorghum bicolor])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-05
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKANL-RLQRRAHR 97
           RQ+ Q+ +  + P +   PYT+TG+ R+A F +P A    A  PP S ++  R QR   R
Sbjct: 67  RQMAQTSASTAAPSAPHAPYTSTGMLRSARFLSPPA---PAPAPPSSPSDARRAQRMRQR 126

Query: 98  TIELSPRAQINAQSNAARIITMFVSKLASLL 126
             EL P A+ +A S+AAR++TM VSKLASLL
Sbjct: 127 ASELRPSAKRSANSSAARMMTMLVSKLASLL 154

[Close]
BLAST of Clc11G06110 vs. NCBI nr
Match: KAF8716856.1 (hypothetical protein HU200_025955 [Digitaria exilis])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-05
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPV----SKANLRLQRRAH 97
           RQ+ Q+ +  +   S PYT+TG+ R        +ARR + PPP     S+A  R QR   
Sbjct: 76  RQMAQTSAATAGAPSAPYTSTGMLR--------SARRLSPPPPAAASRSEAARRAQRMRQ 135

Query: 98  RTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLPLDGAAVVSAS 144
           R  EL P A+  A+S+AAR++TM VSKL SL+     LL L      SA+
Sbjct: 136 RASELRPSAKRRAKSSAARMMTMLVSKLPSLVLPGPGLLLLSACCAASAA 177

[Close]
BLAST of Clc11G06110 vs. NCBI nr
Match: CAB3478694.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-05
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPV----SKANLRLQRRAH 97
           RQ+ Q+ +  +   S PYT+TG+ R        +ARR + PPP     S+A  R QR   
Sbjct: 66  RQMAQTSAATAGAPSAPYTSTGMLR--------SARRLSPPPPAAASRSEAARRAQRMRQ 125

Query: 98  RTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLPLDGAAVVSAS 144
           R  EL P A+  A+S+AAR++TM VSKL SL+     LL L      SA+
Sbjct: 126 RASELRPSAKRRAKSSAARMMTMLVSKLPSLVLPGPGLLLLSACCAASAA 167

[Close]
BLAST of Clc11G06110 vs. ExPASy TrEMBL
Match: A0A059A153 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01285 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 66/121 (54.55%), Postives = 75/121 (61.98%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANLRLQRRAHRTIE 97
           RQIG SV+ I    +DPYTATGIWR +   +PV A   A    VS  NLRLQR A RT+E
Sbjct: 25  RQIGHSVAGIFAAAADPYTATGIWRRSRLLSPVVASLAAACSGVSAPNLRLQRSAQRTME 84

Query: 98  LSPRAQINAQSNAARIITMFVSKLASLLYE-FRVLLPLD-----GAAVVSASR--RRRWG 151
           LSPRAQI+A S AAR+ITM VSKL SL+YE     +P       G    SASR  R RW 
Sbjct: 85  LSPRAQISAHSRAARMITMLVSKLVSLMYESVAAAVPFSPDASGGGPPRSASRNLRFRWS 144

[Close]
BLAST of Clc11G06110 vs. ExPASy TrEMBL
Match: A0A1B6Q6S2 (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G338600 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.3e-06
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKANL-RLQRRAHR 97
           RQ+ Q+ +  + P +   PYT+TG+ R+A F +P A    A  PP S ++  R QR   R
Sbjct: 67  RQMAQTSASTAAPSAPHAPYTSTGMLRSARFLSPPA---PAPAPPSSPSDARRAQRMRQR 126

Query: 98  TIELSPRAQINAQSNAARIITMFVSKLASLL 126
             EL P A+ +A S+AAR++TM VSKLASLL
Sbjct: 127 ASELRPSAKRSANSSAARMMTMLVSKLASLL 154

[Close]
BLAST of Clc11G06110 vs. ExPASy TrEMBL
Match: A0A6A6MZC8 (Chalcone-flavonone isomerase family protein OS=Hevea brasiliensis OX=3981 GN=GH714_014347 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 67  FNPVAARREAVPPPVSKANLRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLL 126
           F PVAA+R A    VSKANL +  +A RT+E S  A INAQS A  +ITMFVSKLASL+
Sbjct: 253 FKPVAAKRAAASSGVSKANLLIHLKAQRTVEFSLSAHINAQSRA--MITMFVSKLASLV 309

[Close]
BLAST of Clc11G06110 vs. ExPASy TrEMBL
Match: A0A368QGZ0 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_3G204600v2 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 0 

Query: 48  SRPDSDPYTATGIWRNALFFNPVAA-------RREAVPPPVSKANLRLQRRAHRTIELSP 107
           S P   PYT+TG+ R+A F  P A          +A  PP   A     R AHR  ELSP
Sbjct: 92  SPPPPPPYTSTGMLRSARFLIPPAQDAPRVDDDADAPSPPPPAAPRIPHRSAHRASELSP 151

Query: 108 RAQINAQSNAARIITMFVSKLAS 124
            A  +A+ +AAR+ITM VSKLAS
Sbjct: 152 MANSSAKKSAARMITMLVSKLAS 174

[Close]
BLAST of Clc11G06110 vs. ExPASy TrEMBL
Match: A0A287LWU2 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 41/93 (44.09%), Postives = 48/93 (51.61%), Query Frame = 0 

Query: 54  PYTATGIWRNALFFNPV--------AARREAVPPPVSKANLRLQRRAHRTIELSPRAQIN 113
           PYT+ G   +  F +P         AA      PP S A  R  R  HR  ELSP A+  
Sbjct: 88  PYTSMGRLLSVSFLSPPRPPADADDAASSSPPAPPASSAERRAHRMRHRASELSPSAKSR 147

Query: 114 AQSNAARIITMFVSKLASLLYEFRVL-LPLDGA 138
           A+S+AAR+ITM VSKLAS L   R     LDGA
Sbjct: 148 AKSSAARMITMLVSKLASPLLRARCAPSALDGA 180

The following BLAST results are available for this feature:
BLAST of Clc11G06110 vs. NCBI nr
Match NameE-valueIdentityDescription
KCW47523.13.4e-1854.55hypothetical protein EUGRSUZ_K01285 [Eucalyptus grandis][more]
KAF7830868.13.6e-0768.42hypothetical protein G2W53_013201 [Senna tora][more]
KXG33623.11.5e-0545.05hypothetical protein SORBI_3003G338600 [Sorghum bicolor][more]
KAF8716856.12.6e-0540.00hypothetical protein HU200_025955 [Digitaria exilis][more]
CAB3478694.12.6e-0540.00unnamed protein product [Digitaria exilis][more]
BLAST of Clc11G06110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G06110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A059A1531.7e-1854.55Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01285 PE=4 SV... [more]
A0A1B6Q6S27.3e-0645.05Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G338600 PE=4 SV=... [more]
A0A6A6MZC82.8e-0561.02Chalcone-flavonone isomerase family protein OS=Hevea brasiliensis OX=3981 GN=GH7... [more]
A0A368QGZ01.4e-0445.78Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_3G204600v2 PE=4 SV=1[more]
A0A287LWU21.4e-0444.09Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
BLAST of Clc11G06110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G06110.1Clc11G06110.1mRNA