Clc11G04900 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G04900
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Mediator of RNA polymerase II transcription subunit 32
Location	ClcChr11: 4696897 .. 4702787 (+)
RNA-Seq Expression	Clc11G04900
Synteny	Clc11G04900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAGCTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTGTACTACTCTTACATATTTGCCCAAGGCCCAACTGGCCGGCCCATGTTTCAAATATTTGTTTCTGTTTTTTTGAGGGTTTCCGACCTAATAGTATTTAAAATAAGGGTTATATTAAGTTACAACGGTCTATTTCGCTTTGTTTCTCTCTCATCCACGCATGGGCTTAGGGCGTCATGGCCATTGATATATCTTTTTAAAAAATTAAGAAAATATTGGAATTCTTCCACTTCCTCTTTCTTTTTCTTCTATTTTCTTATTCCTCATCCCTTTCTTTTCTCCTTCTCGTTGGTGTGAGTTGCAGGCCGGTGATGGACGCACGTGGCAAGCATCTTCCGACGCGGGGTGATCAGATCTTGTGCATCTTCCAGCACGAGGCAAGCAGATTCAACACATCTCTAGCGCAAGGAGAGCAGATTCGGCGCGAGACGAATCAACGATGTGGGGTTCTGGATGTTAACGATCAACGACGCTGGATGGTTTATATTATACATGGACACAGTTATATTGAAACTACTTTATTTTTTTTCATATATATATCTATTCATTTTCGATATATTGGGTAATTTTTTGATATAAATATATATCTTCAATTTTTATTGAGGCTTTTTGTTTTATGATCTATATATATTGAACATTAAATTCATAATTTACGATTTATATACGATGGTAGATAACTTTGTTGATTTCAAAATCATGAGGTTTAAATTGAATTTGAAACAATCACATTAATTGAGAATTACATATTTATGTTAAGAAGCTTCTGTAAAATTTACTTCAATGTAATTTAGTCAATCTTACTAGTATATTTCATATATTGATTAGAATACTTGCAAACATTTGAGACAAATGTTCTAATGTATATTTAAAAATAACCACAATCTAAACTATGGTATATATAAGATAATAACGCAAAATATAAACAAACTCAAAATAAACAACAAACTATAATAGACAAACTCAAATAAGTTAGATCATCATATAAACAATAAGTCCATACATATCATAATACCTCAAACCTATGTCAAATAAACAGTGAAATATATTATATTAGAACAAATATTACTCAAACAAACAATGTAATATAAATGCATTTATGGGAAAAAAATATACTATATGAGAACAAATACGTTAGAACATTTATTTTATCTCTCCATAATAAATGTGTTTTCTCTTTTCATAAGCCTGGTAAATAGAGGAATATATATCTAAATCGGACAAAAAATAATAAAAAAGGGGCAAATTAAATGCATTTTCTATCTCCGTAATAAATTAATTTTCTCTTCCTATTATTAAGAGAGCTTCGTAAATAAGAAAATATATATAAAAATAGGACAAGAAAGTAATAAAAATGACAAATTTGTCAAAAAAAAAAAAAATAATACCAAAAGCCTTTATTGAAAAAATTCAAAATTAAAGACATTTTTAAAAATATATGGCCAAATATAGTTTTTTTTAATGTAAAAATCTCTTTTTTTAATGTTTATCTGTGTGCTAGTCGTCCATAGATTATATTTTATAGATTAGAAATAGTCTATCATACATATATATATATATATAAATTATCTCTAATTAACATAAAAATAATTTATTAGGAAAATAAATCTATCAAGTCTACCTATCACCTATAGACATATAAATGGAGATAAAATCATATAAATTTTCTATTAGTGGTATACATCTTATAATTTGGATTGATTTAAGAAATAAATGTTTTTTAAAAATTGATTTTCATTTTAACACTTTTGATAAGAACAATTTATAATAAATACACTATGACTTTTAAAGTTAATTTTGAGTGGTTGCCAAAATATTCTATTTATTTTAAAATGACTTATTTTTTAAATTAAATATTTGAAAAGATATTCCAAACATATCAATAAATTAGACCCTCCAAAAGAATAAAAAGTTGTCATATTTGCAAATTATTTATTTATGTGACATGACCATAAATTTTGGCATTTAATAAAAGTGTCCCATATTTAATTTTGAAATTTTAATTTGGGGAGAAATGTCTTGTTTTAGCTCACACGTGTCAAGGGTATCCAATTTTACTCTAAATTTTTAATTTCAATGAAATATGAGATGTGAATATATTTTTAAATTTTATAACAAAAATAGTAATAAATAACAAAAGAAATTTTTTTTTGAAAAACCAACAATAAACTAATATTAGGAACTAAGTTTAAGATTATTTAAAATACAAGACTAAAATTTATTAACTAAAAAAATTAAAATATAAAAGAGATAAAACCAAATAAATTATATATCTATCCTCCGTTTGAATAATAATAAAAAAAAAGTTTAAAAAATGATTTTAAAGTGTGTGATTTGAAATCTGAAAAAATAATTTTAAATTAATTATTTCATTTGTAAGAAGAAAAATTTTAAATGAAGATATTTAAAATTTTGTGTTTGGCTGATAGACTACAAAAAAATAAAATTAGGATTTTGTTGAAAGATAATTGATTAAAAGACCAATCTTTCAAGTCCATTATGAGTTTTGCCCCGTAAACTTAATGACCGACTCCTTAAATCATTTTCAACCAATTTTACAAAATCACCTTACTTCTTTTTTATATTCTGCATCTTCTACGTTTTCCTTTCCTTTTTTATTTTCTTCTTCTTCTTCGACTAGATTCCACGAGGTTCTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTCTTTCCTTTTTCACTCTTCTTCTTCTCTGACTAGTTCCGACGAGTCGAAACAATCAACTTCTTGTTCTTTCCCGCGTTTCAGTTTGTGATGAATGAGACCGATCATCGGAGAGTAAGAGAGTGAGAATGTGGGAGTGCAAGAAAGTGAGAAAGAGAAGGAAAATCAACAGGACAAGGAAGTTGAAAGCGAAGAGTAAAGAGTCAAGTCTTTACTCAAGTCTAATGCACGTGTTTTCATTTTAGTAATTTTACCTAAATAGGACGTGAGCCAAATTATTATTTAAAAAAATAAATAAATAAACTTAAATTCAAAGGGTACTTCAATTTTCATTTATTTAAATTAGATCTCAGTCGTCTTCCTCGATATCTCTCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGGTGAGTCCTCTTCCATCTCTATCTTTCTTTCTTTCTCTCTCTAAGATCTGTTTTCTGCATAGTGTTTCCGCCGCGCTGGTCATGAATTTTGGAAAAAAGAAAAAAAAAATTAAAGAGGAGCAAGAATGTTAACTTAGGAGGTATAAAGTTTAAGGTTGAATGCGATGGAAATTGAAATCGAGAGAATTTGGAGCTATAAATTTGATTTTTCACCTTACTTTAAAAATTAAATTTGGTTCCAACTTTCTCCCAAAAGAGTAAACTGCTGACGCTATTGATCTCTCCCAATTCTCCTCCTCGCTTGATAACCTCTCTTTCAGTTTTCACGCTTGCCTTAGCTTCGAGCAAGTGACAAGTAGATCGATTGCAGATTTGCAGTTTCTCTGAGCCCTTTACTCTCCATTGCGGTCTGCTACTTGTCCCACTTTCTGTTTCGGTATTGTAATCGTTTCTTTTAAAGATTGAACCGTACCACAAGGAAGGAAACTGATACGCTTTTCAAATTTGTTTTTCTCAACTTTGGTGGGTTGAATTCAGAGGATTCGATGGGTTTCCCTGCCAATCTTCTTCCTCCTCCGCTGGGATCTTTTCAATTTCCCCCTCTCTTTTCCATTTTCGTAGATTATTGTCTTCTTTGTTGATTCTGGTTTTGTTCCTCTTTTTCTGGCTCAGTTTTATCCTCTTCCTCTGCCCCGGCAGTATGAGATTCTCTTTTCCCCCAATTTGCTACTTCCCCATTCTCTAAAAGAGAGAGACAGATGGCTTGAATAACCCTCTGTGTACAGTACCTTTTTGGAGGCCGAACTTTGAACAGGTTTCTCCCCTCATTAACAGAAGACTTTCATCTTTCAGAGTGCCATCGCTGTTGCAATCTTTCACTTTTTGGGTTCAAAGCTTTTAACTCATGAACAAATTATTGATGGTCTGCATTTCTTAATTTGTTTTCCATTTTTATTTCCTTGAATCTTTGCATATTTTGCTGCTAAATCATCTTGAAAAGCATTAGTCCTGTGAGTTTTCCCCCCGTAGCTGTTTGGTATCCCGATGTATATATGTATGTATATCTATGTATCTATGTATCTATCTATATATATATATATATCCTTTTTCTTTTTTTTTTTTTGAGAAGAGAAACGATTTCGTTTCATTGACAGGAAGGGAGAGAACCCTAACACATCTGTAGGTGAATTACATGACGTTCTCCAATGAGAAATTAACAAAGATAGGCTATATGTATTTAAAGGGTGTTCACATTTACACCGATGCATAACATGAAAAAGAATTAAATTCATAAAGTTATTAAAGGAAGAGAAAAGATCCCTGAAAATTCTATCAAGAGCCAACTATAAAGTCTTCTTTGCCCCATGGAAAGGGTGACCCGTCAAAATTGAAGTGAGGAAATCAAAGATGGTGTTAGGCTAAGGTATGGACCAATCGAAAGTAGCAAGAATAATGTCCCAGTATCTAGAAGCAAAAGGACAGTGAGCAAATAGGTGATTAGGAATTTCTGAAGCTATACAACACATAACACACCAAGATGGAGAAAGGTGTTTATGTGTAGGAGTAGTATGGTATTAGTAAGGGCATTGGGGTAATTAGTTAGGGAGTTGGTTAGGGTATTTGGTTATTAAATAGAGGGAGGGGGGTTGAGGAAAGGAAGCAATTGTTGAGTGATTTAGAGCTTGGGTTAGCATACTCAAGAGGAGAGGTTCTAAGTGCCTAATACTTGGTTTATCTTGTTTTTCTTGATCATTTATATTTCAATATATTTCAGTTCTTGATTCCTGGTAGGTGGTACTGTAACAAAAGGTTGATAAATGGCATTCTCCTTTGTAGTCAATTGGTTGCGTTAACAACAACTTCAAGGCTAAGTTCCCAAAGAAAGATTTTAATCTTCCTAAGCATCTTGCCAAATCACTGTCCCTTTGTTTTTCTGTCTTGGTAGGCTAAAGTGGAATATGAAAGTTTAGGAACCAAAGTGCAATCGATATGAAAGTTCAAGATCTTGATTGTTTTCTCATGCATTTTAGCATTTCACAAGAGACTAGACTCTAGGTACTTACTTTCTTGGTTGTCATATATTTAGGTACTTGATATGGACAGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG

mRNA sequence

ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAGCTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTATCTCAGTCGTCTTCCTCGATATCTCTCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG

Coding sequence (CDS)

ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAGCTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTATCTCAGTCGTCTTCCTCGATATCTCTCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG

Protein sequence

MDDVRLCEETEKLRDAVKAEATTILSEACENGAVLSSFTVKPKETNGNYNNIDEAPKFTKLAPHLSQSSSSISLTLSPRQATAPPPSDLRRSAAAPPSDVRPAAEVSRRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

Homology

[Close]

BLAST of Clc11G04900 vs. NCBI nr
Match: XP_038902813.1 (mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_038902814.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida])

HSP 1 Score: 265.4 bits (677), Expect = 5.0e-67
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQA TTG+PPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQAATTGIPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDATQ 146

[Close]

BLAST of Clc11G04900 vs. NCBI nr
Match: KAA0045925.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-66
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDATQ 150

[Close]

BLAST of Clc11G04900 vs. NCBI nr
Match: XP_008457936.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTED TQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDTTQ 146

[Close]

BLAST of Clc11G04900 vs. NCBI nr
Match: XP_004148855.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031736355.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >KGN61780.1 hypothetical protein Csa_006151 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDATQ 146

[Close]

BLAST of Clc11G04900 vs. NCBI nr
Match: TYK13665.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTED TQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDTTQ 150

[Close]

BLAST of Clc11G04900 vs. ExPASy Swiss-Prot
Match: Q84VW5 (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.8e-43
Identity = 101/150 (67.33%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEEFVE
Sbjct: 4   IVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPPISAVRLEQMSKAVRWLVIEL 229
           SVKQRIGSECLVDEATG   + AG    A  TG    LPPISAVRLEQMS+AVRWLV+EL
Sbjct: 64  SVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLVLEL 123

Query: 230 QHGSGAAASASAHSHPSAPFDARFTEDATQ 253
           Q GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 124 QRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

[Close]

BLAST of Clc11G04900 vs. ExPASy TrEMBL
Match: A0A5A7TWZ7 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004640 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 5.4e-67
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDATQ 150

[Close]

BLAST of Clc11G04900 vs. ExPASy TrEMBL
Match: A0A5D3CQ46 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001830 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTED TQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDTTQ 150

[Close]

BLAST of Clc11G04900 vs. ExPASy TrEMBL
Match: A0A0A0LIN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDATQ 146

[Close]

BLAST of Clc11G04900 vs. ExPASy TrEMBL
Match: A0A1S3C6T6 (mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 GN=LOC103497499 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTED TQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDTTQ 146

[Close]

BLAST of Clc11G04900 vs. ExPASy TrEMBL
Match: A0A6J1JH28 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484308 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.0e-65
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLPPISAVRLEQMSKAVRWLVIELQHGSG 229
           SVKQRIGSECLVDEATGSLAGKSGQ  ATTTGLPPISA+RLEQMSKAVRWLVIELQHGSG
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAIRLEQMSKAVRWLVIELQHGSG 123

Query: 230 -AAASASAHSHPSAPFDARFTEDATQ 253
            AAASASAHSHPSAPFDARFTEDATQ
Sbjct: 124 AAAASASAHSHPSAPFDARFTEDATQ 149

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BLAST of Clc11G04900 vs. TAIR 10
Match: AT1G11760.1 (MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-44
Identity = 101/150 (67.33%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEEFVE
Sbjct: 4   IVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPPISAVRLEQMSKAVRWLVIEL 229
           SVKQRIGSECLVDEATG   + AG    A  TG    LPPISAVRLEQMS+AVRWLV+EL
Sbjct: 64  SVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLVLEL 123

Query: 230 QHGSGAAASASAHSHPSAPFDARFTEDATQ 253
           Q GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 124 QRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

The following BLAST results are available for this feature:

BLAST of Clc11G04900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902813.1	5.0e-67	97.20	mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_0...	[more]
KAA0045925.1	1.1e-66	97.20	mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa...	[more]
XP_008457936.1	3.3e-66	96.50	PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]	[more]
XP_004148855.1	3.3e-66	96.50	mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031...	[more]
TYK13665.1	3.3e-66	96.50	mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa...	[more]

BLAST of Clc11G04900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84VW5	1.8e-43	67.33	Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana O...	[more]

BLAST of Clc11G04900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWZ7	5.4e-67	97.20	Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku...	[more]
A0A5D3CQ46	1.6e-66	96.50	Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku...	[more]
A0A0A0LIN7	1.6e-66	96.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1	[more]
A0A1S3C6T6	1.6e-66	96.50	mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JH28	1.0e-65	95.89	mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurb...	[more]

BLAST of Clc11G04900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11760.1	1.3e-44	67.33	MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0;...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..252
None	No IPR available	PANTHER	PTHR35989:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32	coord: 110..252
IPR033244	Mediator of RNA polymerase II transcription subunit 32	PANTHER	PTHR35989	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32	coord: 110..252

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G04900.2	Clc11G04900.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009631	cold acclimation
biological_process	GO:0010150	leaf senescence
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048364	root development
cellular_component	GO:0016592	mediator complex