Clc11G04520 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G04520
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pentatricopeptide repeat-containing protein
Location	ClcChr11: 4285901 .. 4288323 (+)
RNA-Seq Expression	Clc11G04520
Synteny	Clc11G04520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAAAAGAGAAATGGGTTTGAAGGCGGAGATATAAAATTGGTGAAAAACACGGCGGAAACTGGGATTACAGCGACGGAGGAAGAACCTGAGAAGATGGGTTGGCAACGAAGGTAATGGGACGGTGGGAAATCGGCAGAAACGCGTCGGAATTTCTTAAACGGACAATAATTTGGAAGAAAAAGTTGATTGATTTAGATGATTTGATGGATTCTTTTACCTGGTTTCTTGGAAATTGATTGGTTTCCGACATGATTTTTCTCTCAATGAGTATATTCATATTTCCGATGTGTCGTTCAGCTTCGAGATTCCTCCTTCAGGCAAGTGTCGTCTGATGAAAGTCTCTCATTATTCATTAATGGATTTTTTTTTTATAAGTTTTTATTTTGTAAAATCAACCATGTTGTATACGAGTTTTGATACTTGGTTCTTGCTCTCAGTTCTCGATATTTACTACTTGCTCTTTTTCCTTCTTATGGTTGGCAGTAAACTTCTGCAAAATGTCAATTTTATAAATTCAATATTAAAATTAATGTAGGAAATTTTAACATAAAGTTTAAATTAATCTATTTATAAAAATTTATAAGTTTGATGGATATAATTATAAACTTCACCGATGATTTTCAAAACAAAATGTAGTTAAGTTATGAATTAATATAAAATTTTTAGTTACTCGGTTTTAATATGAATAATAATATGTTAGTTGCTTGTTTTTTTTAAATAACATGAGGGATAGGTTCCTCAAATTACGTGTATGCATGTGTTTTTTTTTTACAACACGTACAATTAAGGAATCAAATATGAGAGTTTTTTAGCATAAATTTATGTAAGCTATACTCATATGGACAAATAATATGTATTTTAATTTGCTTAAAAGTAAGAATATGTTCATTTAATAATTTTTTTTCAAAAATATTGATAAAATTGAGACCTAATGCCTTAAAAATAAATAATAAAATTGAAATCTAAATATTTGCATTTATTTTCATTTTAAACTAGGATTAATCTAATTGGATTCAAATACTTCCTAGATCCAATCCAATTGTTCGAGTTGTAAATTTATCCAACCGAAATAATACTTATTAACTCAAATAACTTAGCATCCTTCTCAAATTCTGTTGAAGCTCAATTTAAGAATATGTTTGGGAGTGATTTCAAATGTTGAGTAATTATGAATAAAAGAAATTGATTTTAACCGTTTAAAAATCCACAGCTTGAATCTGGTTCTATGATGAGGATCTTCCGTGTCAAAAAGATTTAGAAATCAGCAGCACCATTCAACTTCATGCACAAATTATCAAATCGGGAAGCCCAATACGTAAAGACCTCCCGCTCATCTTCCCATCAGGGACTTGACCCATATAAAATGGAAGATAGATACATGGGTTGATTCTGGAACTTGGTCTGGCATTGGTTTGTTTTCTGCAAAACTCGTTGGTACATCTTCTCGATGCTCGACAACTTGGGTCTTGCATACTAAGTGTTTGTTAAAATGTCTGTGAGAGATTTAGGTTCAATTGGACTTTTGTTACTTATGGGCTCGTTGAAAATGAGTTTTTTTTTCTGCCGAGCTCATCATCTGTTAGTTGCATTTATTGAGTTTGTTATCGGTTAGTAGAGGGCTAGATTTAACTCTGTTAGCATCTCTCGGGTGTATTATTTTATCAGCATTCAAAATGCAGTTTGGCCTTTTGGGTGAAGAAAGGTTGTTTCCTTTTAACAACTGCAAATCATGAATGGAGTTGAAACAACCAATATCCAATATTAAGGATTTATGGTGGACCTTCTTGCCAGGGCAGTGCATTTGAAAGAAACTGAAGAGCTTGTAAGAACTATTCCAGTTGAACCTGGCAATCTGCTTTGGAGAAATTTGATATGGGGATGTATTTTCTCGAATATCTTGAGCTTCTTGAGAAGAATGTTTTTGGGAGCTATGGTTGGGAAGTGGCATGATAATTAAGGCAAAGGTTAAGGATTGGTGAATATAAGATGATTAATAAAACCAGCACGGAAAGGTAGAGATTGATGGGGTAATCCACGAGTTTGCGGCAGGAGAATTAGGTCATCCTGAAGCAGAAAGTATCTGGTGGAAATGTAATGGAATATATAGTCAACCAAAACTCCCAGATATTTTGCTTGAAGTTGGCAATAATGCAGAGTTCCTCAATTGCAAGTTACAACACCACAGCGATAAACTTGCTCCAATGCAAATTCTGAGATTCAGATCCTTGAAAATCGATCTGTCCTGCGAGGACTGCCACAAGTTTATGAAACTTGTTTCAAAGATATACCAAAGAGAGATTAGAATGAATGGTAGATTCCGTTTCCACTATTTCAGGGATTGTTACTTCCTTTTCCAAGGAGCAAAGGTAGCAGGGAGATTTGTTACTTGGTTGATATTTTTCCTTAAGCAATACTGA

mRNA sequence

ATGAGGAAAAAGAGAAATGGGTTTGAAGGCGGAGATATAAAATTGGTGAAAAACACGGCGGAAACTGGGATTACAGCGACGGAGGAAGAACCTGAGAAGATGGGTTGGCAACGAAGGGCAGTGCATTTGAAAGAAACTGAAGAGCTTGTAAGAACTATTCCAGTTGAACCTGGCAATCTGCTTTGGAGAAATTTGATATGGGGATGTATTTTCTCGAATATCTTGAGCTTCTTGAGAAGAATGTTTTTGGGAGCTATGCACGGAAAGGTAGAGATTGATGGGGTAATCCACGAGTTTGCGGCAGGAGAATTAGGTCATCCTGAAGCAGAAAGTATCTGGTGGAAATGTAATGGAATATATAGTCAACCAAAACTCCCAGATATTTTGCTTGAAGTTGGCAATAATGCAGAGTTCCTCAATTGCAAGTTACAACACCACAGCGATAAACTTGCTCCAATGCAAATTCTGAGATTCAGATCCTTGAAAATCGATCTGTCCTGCGAGGACTGCCACAAGTTTATGAAACTTGTTTCAAAGATATACCAAAGAGAGATTAGAATGAATGGTAGATTCCGTTTCCACTATTTCAGGGATTGTTACTTCCTTTTCCAAGGAGCAAAGGTAGCAGGGAGATTTGTTACTTGGTTGATATTTTTCCTTAAGCAATACTGA

Coding sequence (CDS)

ATGAGGAAAAAGAGAAATGGGTTTGAAGGCGGAGATATAAAATTGGTGAAAAACACGGCGGAAACTGGGATTACAGCGACGGAGGAAGAACCTGAGAAGATGGGTTGGCAACGAAGGGCAGTGCATTTGAAAGAAACTGAAGAGCTTGTAAGAACTATTCCAGTTGAACCTGGCAATCTGCTTTGGAGAAATTTGATATGGGGATGTATTTTCTCGAATATCTTGAGCTTCTTGAGAAGAATGTTTTTGGGAGCTATGCACGGAAAGGTAGAGATTGATGGGGTAATCCACGAGTTTGCGGCAGGAGAATTAGGTCATCCTGAAGCAGAAAGTATCTGGTGGAAATGTAATGGAATATATAGTCAACCAAAACTCCCAGATATTTTGCTTGAAGTTGGCAATAATGCAGAGTTCCTCAATTGCAAGTTACAACACCACAGCGATAAACTTGCTCCAATGCAAATTCTGAGATTCAGATCCTTGAAAATCGATCTGTCCTGCGAGGACTGCCACAAGTTTATGAAACTTGTTTCAAAGATATACCAAAGAGAGATTAGAATGAATGGTAGATTCCGTTTCCACTATTTCAGGGATTGTTACTTCCTTTTCCAAGGAGCAAAGGTAGCAGGGAGATTTGTTACTTGGTTGATATTTTTCCTTAAGCAATACTGA

Protein sequence

MRKKRNGFEGGDIKLVKNTAETGITATEEEPEKMGWQRRAVHLKETEELVRTIPVEPGNLLWRNLIWGCIFSNILSFLRRMFLGAMHGKVEIDGVIHEFAAGELGHPEAESIWWKCNGIYSQPKLPDILLEVGNNAEFLNCKLQHHSDKLAPMQILRFRSLKIDLSCEDCHKFMKLVSKIYQREIRMNGRFRFHYFRDCYFLFQGAKVAGRFVTWLIFFLKQY

Homology

[Close]

BLAST of Clc11G04520 vs. NCBI nr
Match: XP_015869041.1 (pentatricopeptide repeat-containing protein At4g21065-like [Ziziphus jujuba] >XP_015872313.2 pentatricopeptide repeat-containing protein At4g21065-like [Ziziphus jujuba])

HSP 1 Score: 122.1 bits (305), Expect = 6.1e-24
Identity = 79/219 (36.07%), Postives = 107/219 (48.86%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCIFSNILSFLRRM----------------- 98
           RA  L+E EEL+R +P+EP  +LWR LIW C     ++   R+                 
Sbjct: 359 RAGQLEEAEELIRKMPMEPDIVLWRTLIWACKVHKDMNRAERLIRHLEHLKMDSRDSGSL 418

Query: 99  -FLGAMHG---------------------------KVEIDGVIHEFAAGELGHPEAESIW 158
             +G ++G                           K+E+DG IHEFA G+ GHPEAE I+
Sbjct: 419 VLIGNVYGSVGKWHDKARTRKLMSKKGLVKPPGSSKIEVDGKIHEFAVGDSGHPEAERIY 478

Query: 159 WKCNGIYS-------QPKLPDILLEVGNNAEFLNCKLQHHSDKLAPMQIL-------RFR 199
            K + I         QPK+ ++LLE+ +  +    +L HHS+KLA    L         R
Sbjct: 479 TKLDEIEEQLSKKGYQPKVSEVLLEIEDEEKAF--QLSHHSEKLAFAYGLIKIGVESEIR 538

[Close]

BLAST of Clc11G04520 vs. NCBI nr
Match: XP_015872293.1 (pentatricopeptide repeat-containing protein At4g21065-like [Ziziphus jujuba])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-23
Identity = 78/219 (35.62%), Postives = 107/219 (48.86%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCIFSNILSFLRRM----------------- 98
           RA  L+E EEL+R +P+EP  +LWR LIW C     ++   R+                 
Sbjct: 359 RAGQLEEAEELIRKMPIEPDIVLWRTLIWACKVHKDMNRAERLIRHLEHLKMDSRDSGSL 418

Query: 99  -FLGAMHG---------------------------KVEIDGVIHEFAAGELGHPEAESIW 158
             +G ++G                           K+E+DG IHEFA G+ GHPEAE I+
Sbjct: 419 VLIGNVYGSVGKWHDKARTRKLMSKKGLVKPPGSSKIEVDGKIHEFAVGDSGHPEAERIY 478

Query: 159 WKCNGIYS-------QPKLPDILLEVGNNAEFLNCKLQHHSDKLAPMQIL-------RFR 199
            K + I         QPK+ ++LLE+ +  +    +L HHS+KLA    L         R
Sbjct: 479 TKLDEIEEQLSKKGYQPKVSEVLLEIEDKEKAF--QLSHHSEKLAFAYGLIKIGVESEIR 538

[Close]

BLAST of Clc11G04520 vs. NCBI nr
Match: XP_008236936.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Prunus mume])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-23
Identity = 78/222 (35.14%), Postives = 111/222 (50.00%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCIF-------SNILSFLRRMFLGAM----- 98
           RA HLKE EE +R +P+EP  ++ RNLIW C           ++  LR++ +G+      
Sbjct: 346 RAGHLKEAEEFIRKMPIEPDVVMCRNLIWACKVHKDNERAERLIIHLRQLKMGSNDSGSY 405

Query: 99  ---------------------------------HGKVEIDGVIHEFAAGELGHPEAESIW 158
                                            + ++E+DG IHEFA G+ GHPEAE+I+
Sbjct: 406 VLIGNVYASAGKWHDKARVRELMKQKGLVKPPGYSRIELDGEIHEFAVGDSGHPEAETIY 465

Query: 159 WKCNGIYS-------QPKLPDILLEVGNNAEFLNCKLQHHSDKLA-PMQILR------FR 200
            K   I          PKL ++LLE+ +  +    +L HHS+KLA    ++R       R
Sbjct: 466 RKLEEIEDNLRKEGYDPKLSEVLLEIDDEEKAF--QLSHHSEKLALAFGLIRTSPGSEIR 525

[Close]

BLAST of Clc11G04520 vs. NCBI nr
Match: PON77386.1 (DYW domain containing protein [Trema orientale])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-23
Identity = 78/219 (35.62%), Postives = 104/219 (47.49%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCIFSNILSFLRRMF---------------- 98
           RA HL + EEL+R +P+E   +LWR LIW C     ++   R+                 
Sbjct: 351 RAGHLSDAEELIRKMPIEADRVLWRTLIWACKLHKDMNRAERLIKHLESLKMDSNDDCGS 410

Query: 99  ----------LGAMH--------------------GKVEIDGVIHEFAAGELGHPEAESI 158
                      G  H                     K+EIDG +HEF  G+ GHPE+E I
Sbjct: 411 LVLIGNVYASAGKWHDKARTRELMNKRGLVKSPGSSKIEIDGAVHEFIVGDSGHPESERI 470

Query: 159 WWKCNGIYS------QPKLPDILLEVGNNAEFLNCKLQHHSDKLAPMQIL-------RFR 199
           + K + I        QPKL ++LLEV +  E    +L HHS+KLA    L         R
Sbjct: 471 YAKLDEIEEKLKEEYQPKLYEVLLEVDD--EEKTFQLSHHSEKLALAFGLIKTGPRTEIR 530

[Close]

BLAST of Clc11G04520 vs. NCBI nr
Match: XP_030523087.1 (pentatricopeptide repeat-containing protein At4g21065-like [Rhodamnia argentea])

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-23
Identity = 79/218 (36.24%), Postives = 105/218 (48.17%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGC----------------------------- 98
           RA  L+E EE +R +P+EP   +WRNLIW C                             
Sbjct: 351 RAGQLEEAEEFIRKMPIEPDAAMWRNLIWACKVHGDIERGERLMKHLQLFETNADDCGSY 410

Query: 99  -IFSNILSFLRRMFLGAM---------------HGKVEIDGVIHEFAAGELGHPEAESIW 158
            + SN+ +   +    A                  ++E+DG+IHEFAAG+  HPEAE I+
Sbjct: 411 VLISNVYASAGKWCDKARVRELMDKKGLRKPPGSSRIEVDGLIHEFAAGDSSHPEAEKIY 470

Query: 159 WKCNGIYSQ-------PKLPDILLEVGNNAEFLNCKLQHHSDKLAPMQIL-------RFR 198
            K + I  +       PKL  +LLE+ +  +    +L+HHS+KLA    L         R
Sbjct: 471 EKLDEIEEKLIAERYSPKLSQVLLEIDDEDKAF--QLRHHSEKLAVAFGLIKTNPDSEIR 530

[Close]

BLAST of Clc11G04520 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-13
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 90  VEIDGVIHEFAAGELGHPEAESIWWKCNGIYSQPKL----PDI--LLEVGNNAEFLNCKL 149
           +EIDG+IHEF +G+  HP +E ++ K + +  + K     P+I  +L++    E     L
Sbjct: 608 IEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSL 667

Query: 150 QHHSDKL----------APMQILRFRSLKIDLSCEDCHKFMKLVSKIYQREIRMNGRFRF 199
             HS+KL          AP  I   ++L++   C DCH   KL+S++Y REI +  R+RF
Sbjct: 668 NLHSEKLAICYGLISTEAPKVIRVIKNLRV---CGDCHSVAKLISQLYDREIIVRDRYRF 727

[Close]

BLAST of Clc11G04520 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-13
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 90  VEIDGVIHEFAAGELGHPEAESIW--WKC-------NGIYSQPKLPDILLEVGNNAEFLN 149
           + ++G  HEF AG+  HPE E I   W+        NG    P+L ++LL++ ++ E   
Sbjct: 490 ISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYV--PELEEMLLDLVDDDE-RE 549

Query: 150 CKLQHHSDKLA---------PMQILR-FRSLKIDLSCEDCHKFMKLVSKIYQREIRMNGR 199
             +  HS+KLA         P  I+R  ++L++   C+DCHK  KL+SKIY+R+I M  R
Sbjct: 550 AIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRV---CKDCHKVTKLISKIYKRDIVMRDR 609

[Close]

BLAST of Clc11G04520 vs. ExPASy Swiss-Prot
Match: Q9FI49 (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-12
Identity = 58/214 (27.10%), Postives = 90/214 (42.06%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWG-------------------------CIFSN 98
           RA  +KE  EL+ ++P+EP  ++WR+L+                            + SN
Sbjct: 314 RAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAKSGDYVLLSN 373

Query: 99  ILS-------------FLRRMFLGAMHGK--VEIDGVIHEFAAGELGHPEAESIWWKCNG 158
           I S              + +  +    GK  +E  G+IH F AG+  H E ++I+    G
Sbjct: 374 IYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEG 433

Query: 159 IYSQPKLPD-------ILLEVGNNAEFLNCKLQHHSDKLAPMQIL-------RFRSLKID 199
           +  + K          +L++V    +  N  L +HS+KLA   ++         R  K  
Sbjct: 434 LIQKTKSQGFVSDTDLVLMDVSEEEKEEN--LNYHSEKLALAYVILKSSPGTEIRIQKNI 493

[Close]

BLAST of Clc11G04520 vs. ExPASy Swiss-Prot
Match: Q9ZVF4 (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H37 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 53/175 (30.29%), Postives = 87/175 (49.71%), Query Frame = 0


Query: 44  KETEELVRTIP-VEPGNLLWRNLI-----WGCIFSNILSFLRRMFLG--AMHGKVEIDGV 103
           K  + LV T P +   ++L  N+      W C+   + S +R++     A +  VE +G 
Sbjct: 402 KVADVLVETAPDIGSYHVLLSNIYAAAGKWDCV-DKVRSKMRKLGTKKVAAYSSVEFEGK 461

Query: 104 IHEFAAGELGHPEAESIWWKCNGIYSQPK----LPDILLEVGN-NAEFLNCKLQHHSDKL 163
           IH F  G+  HP++++I+ K + I  + +    +PD      +   E   C L HHS+KL
Sbjct: 462 IHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKL 521

Query: 164 A-PMQILR------FRSLKIDLSCEDCHKFMKLVSKIYQREIRMNGRFRFHYFRD 199
           A    +++       R +K   +C+DCH F K VS +   EI M  + RFH+FR+
Sbjct: 522 AIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRN 575

[Close]

BLAST of Clc11G04520 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-11
Identity = 50/222 (22.52%), Postives = 100/222 (45.05%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCI---------------------------- 98
           RA  +K+  E ++++P++P  ++WR L+  C                             
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVL 431

Query: 99  ----------FSNILSFLRRMFLGAM-----HGKVEIDGVIHEFAAGELGHPEAESIWWK 158
                     +S++    ++M    +     H  VE+   +HEF  G+  HP++++I+ K
Sbjct: 432 LSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAK 491

Query: 159 CNGIYSQ-------PKLPDILLEVGNNAEFLNCKLQHHSDKLA------------PMQIL 199
              +  +       P++ ++ ++V    E     + +HS+K+A            P+ ++
Sbjct: 492 LKEMTGRLRSEGYVPQISNVYVDV--EEEEKENAVVYHSEKIAIAFMLISTPERSPITVV 551

[Close]

BLAST of Clc11G04520 vs. ExPASy TrEMBL
Match: A0A6P3YYC4 (pentatricopeptide repeat-containing protein At4g21065-like OS=Ziziphus jujuba OX=326968 GN=LOC107406435 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.0e-24
Identity = 79/219 (36.07%), Postives = 107/219 (48.86%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCIFSNILSFLRRM----------------- 98
           RA  L+E EEL+R +P+EP  +LWR LIW C     ++   R+                 
Sbjct: 359 RAGQLEEAEELIRKMPMEPDIVLWRTLIWACKVHKDMNRAERLIRHLEHLKMDSRDSGSL 418

Query: 99  -FLGAMHG---------------------------KVEIDGVIHEFAAGELGHPEAESIW 158
             +G ++G                           K+E+DG IHEFA G+ GHPEAE I+
Sbjct: 419 VLIGNVYGSVGKWHDKARTRKLMSKKGLVKPPGSSKIEVDGKIHEFAVGDSGHPEAERIY 478

Query: 159 WKCNGIYS-------QPKLPDILLEVGNNAEFLNCKLQHHSDKLAPMQIL-------RFR 199
            K + I         QPK+ ++LLE+ +  +    +L HHS+KLA    L         R
Sbjct: 479 TKLDEIEEQLSKKGYQPKVSEVLLEIEDEEKAF--QLSHHSEKLAFAYGLIKIGVESEIR 538

[Close]

BLAST of Clc11G04520 vs. ExPASy TrEMBL
Match: A0A6P3Z5D3 (pentatricopeptide repeat-containing protein At4g21065-like OS=Ziziphus jujuba OX=326968 GN=LOC107409374 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 78/219 (35.62%), Postives = 107/219 (48.86%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCIFSNILSFLRRM----------------- 98
           RA  L+E EEL+R +P+EP  +LWR LIW C     ++   R+                 
Sbjct: 359 RAGQLEEAEELIRKMPIEPDIVLWRTLIWACKVHKDMNRAERLIRHLEHLKMDSRDSGSL 418

Query: 99  -FLGAMHG---------------------------KVEIDGVIHEFAAGELGHPEAESIW 158
             +G ++G                           K+E+DG IHEFA G+ GHPEAE I+
Sbjct: 419 VLIGNVYGSVGKWHDKARTRKLMSKKGLVKPPGSSKIEVDGKIHEFAVGDSGHPEAERIY 478

Query: 159 WKCNGIYS-------QPKLPDILLEVGNNAEFLNCKLQHHSDKLAPMQIL-------RFR 199
            K + I         QPK+ ++LLE+ +  +    +L HHS+KLA    L         R
Sbjct: 479 TKLDEIEEQLSKKGYQPKVSEVLLEIEDKEKAF--QLSHHSEKLAFAYGLIKIGVESEIR 538

[Close]

BLAST of Clc11G04520 vs. ExPASy TrEMBL
Match: A0A2P5DVS4 (DYW domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_240350 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 78/219 (35.62%), Postives = 104/219 (47.49%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCIFSNILSFLRRMF---------------- 98
           RA HL + EEL+R +P+E   +LWR LIW C     ++   R+                 
Sbjct: 351 RAGHLSDAEELIRKMPIEADRVLWRTLIWACKLHKDMNRAERLIKHLESLKMDSNDDCGS 410

Query: 99  ----------LGAMH--------------------GKVEIDGVIHEFAAGELGHPEAESI 158
                      G  H                     K+EIDG +HEF  G+ GHPE+E I
Sbjct: 411 LVLIGNVYASAGKWHDKARTRELMNKRGLVKSPGSSKIEIDGAVHEFIVGDSGHPESERI 470

Query: 159 WWKCNGIYS------QPKLPDILLEVGNNAEFLNCKLQHHSDKLAPMQIL-------RFR 199
           + K + I        QPKL ++LLEV +  E    +L HHS+KLA    L         R
Sbjct: 471 YAKLDEIEEKLKEEYQPKLYEVLLEVDD--EEKTFQLSHHSEKLALAFGLIKTGPRTEIR 530

[Close]

BLAST of Clc11G04520 vs. ExPASy TrEMBL
Match: A0A5N5I7Y2 (Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_038116 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 78/222 (35.14%), Postives = 112/222 (50.45%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCIFSN-------ILSFLRRM---------- 98
           RA HLK+ EE +R +P+EP  +L+RN+IW C   N       ++ +L+++          
Sbjct: 349 RAGHLKDAEEFIRKMPMEPDAVLFRNMIWACKVHNDTNRAERLIKYLQQLKTNSNDSGSF 408

Query: 99  --------FLGAMHGK--------------------VEIDGVIHEFAAGELGHPEAESIW 158
                     G  H K                    +E+DG IHEFA G+ GHPEAE+I+
Sbjct: 409 VLIGNVYASAGKWHDKAKVRDLMKQKGLVKPPGFSRIEVDGEIHEFAVGDSGHPEAETIY 468

Query: 159 WKCNGIYS-------QPKLPDILLEVGNNAEFLNCKLQHHSDKLA-PMQILR------FR 200
            K   I          PKL ++LLE+ +  +    +L HHS+KLA    ++R       R
Sbjct: 469 RKLEEIEDYLRKEGYSPKLSEVLLEIDDEEKAF--QLSHHSEKLALAFGLIRTRPGSEIR 528

[Close]

BLAST of Clc11G04520 vs. ExPASy TrEMBL
Match: M5VNU1 (DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_8G091500 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 79/222 (35.59%), Postives = 106/222 (47.75%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCIFSNILSFLRRMFL--------------- 98
           RA HLKE EE +R +P+EP  ++ RNLIW C          R+ +               
Sbjct: 346 RAGHLKEAEEFIRKMPIEPDVVMCRNLIWACKVHKDTERAERLIIHLRQPKMGSNDSGSY 405

Query: 99  ----------GAMHGK--------------------VEIDGVIHEFAAGELGHPEAESIW 158
                     G  H K                    +E+DG IHEFA G+ GHPEAE+I+
Sbjct: 406 VLIGNVYASAGKWHDKARVRELMKQKGLVKPPGFSRIELDGEIHEFAVGDSGHPEAETIY 465

Query: 159 WKCNGIYS-------QPKLPDILLEVGNNAEFLNCKLQHHSDKLA-PMQILR------FR 200
            K   I          PKL ++LLE+ +  +    +L HHS+KLA    ++R       R
Sbjct: 466 RKLEEIEDNLRKEGYDPKLSEVLLEIDDEEKAF--QLSHHSEKLALAFGLIRTSPGSEIR 525

[Close]

BLAST of Clc11G04520 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-14
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 90  VEIDGVIHEFAAGELGHPEAESIWWKCNGIYSQPKL----PDI--LLEVGNNAEFLNCKL 149
           +EIDG+IHEF +G+  HP +E ++ K + +  + K     P+I  +L++    E     L
Sbjct: 608 IEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSL 667

Query: 150 QHHSDKL----------APMQILRFRSLKIDLSCEDCHKFMKLVSKIYQREIRMNGRFRF 199
             HS+KL          AP  I   ++L++   C DCH   KL+S++Y REI +  R+RF
Sbjct: 668 NLHSEKLAICYGLISTEAPKVIRVIKNLRV---CGDCHSVAKLISQLYDREIIVRDRYRF 727

[Close]

BLAST of Clc11G04520 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-14
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 90  VEIDGVIHEFAAGELGHPEAESIW--WKC-------NGIYSQPKLPDILLEVGNNAEFLN 149
           + ++G  HEF AG+  HPE E I   W+        NG    P+L ++LL++ ++ E   
Sbjct: 490 ISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYV--PELEEMLLDLVDDDE-RE 549

Query: 150 CKLQHHSDKLA---------PMQILR-FRSLKIDLSCEDCHKFMKLVSKIYQREIRMNGR 199
             +  HS+KLA         P  I+R  ++L++   C+DCHK  KL+SKIY+R+I M  R
Sbjct: 550 AIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRV---CKDCHKVTKLISKIYKRDIVMRDR 609

[Close]

BLAST of Clc11G04520 vs. TAIR 10
Match: AT5G50990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-13
Identity = 58/214 (27.10%), Postives = 90/214 (42.06%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWG-------------------------CIFSN 98
           RA  +KE  EL+ ++P+EP  ++WR+L+                            + SN
Sbjct: 314 RAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAKSGDYVLLSN 373

Query: 99  ILS-------------FLRRMFLGAMHGK--VEIDGVIHEFAAGELGHPEAESIWWKCNG 158
           I S              + +  +    GK  +E  G+IH F AG+  H E ++I+    G
Sbjct: 374 IYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEG 433

Query: 159 IYSQPKLPD-------ILLEVGNNAEFLNCKLQHHSDKLAPMQIL-------RFRSLKID 199
           +  + K          +L++V    +  N  L +HS+KLA   ++         R  K  
Sbjct: 434 LIQKTKSQGFVSDTDLVLMDVSEEEKEEN--LNYHSEKLALAYVILKSSPGTEIRIQKNI 493

[Close]

BLAST of Clc11G04520 vs. TAIR 10
Match: AT2G01510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-12
Identity = 53/175 (30.29%), Postives = 87/175 (49.71%), Query Frame = 0


Query: 44  KETEELVRTIP-VEPGNLLWRNLI-----WGCIFSNILSFLRRMFLG--AMHGKVEIDGV 103
           K  + LV T P +   ++L  N+      W C+   + S +R++     A +  VE +G 
Sbjct: 402 KVADVLVETAPDIGSYHVLLSNIYAAAGKWDCV-DKVRSKMRKLGTKKVAAYSSVEFEGK 461

Query: 104 IHEFAAGELGHPEAESIWWKCNGIYSQPK----LPDILLEVGN-NAEFLNCKLQHHSDKL 163
           IH F  G+  HP++++I+ K + I  + +    +PD      +   E   C L HHS+KL
Sbjct: 462 IHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKL 521

Query: 164 A-PMQILR------FRSLKIDLSCEDCHKFMKLVSKIYQREIRMNGRFRFHYFRD 199
           A    +++       R +K   +C+DCH F K VS +   EI M  + RFH+FR+
Sbjct: 522 AIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRN 575

[Close]

BLAST of Clc11G04520 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-12
Identity = 50/222 (22.52%), Postives = 100/222 (45.05%), Query Frame = 0


Query: 39  RAVHLKETEELVRTIPVEPGNLLWRNLIWGCI---------------------------- 98
           RA  +K+  E ++++P++P  ++WR L+  C                             
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVL 431

Query: 99  ----------FSNILSFLRRMFLGAM-----HGKVEIDGVIHEFAAGELGHPEAESIWWK 158
                     +S++    ++M    +     H  VE+   +HEF  G+  HP++++I+ K
Sbjct: 432 LSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAK 491

Query: 159 CNGIYSQ-------PKLPDILLEVGNNAEFLNCKLQHHSDKLA------------PMQIL 199
              +  +       P++ ++ ++V    E     + +HS+K+A            P+ ++
Sbjct: 492 LKEMTGRLRSEGYVPQISNVYVDV--EEEEKENAVVYHSEKIAIAFMLISTPERSPITVV 551

The following BLAST results are available for this feature:

BLAST of Clc11G04520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015869041.1	6.1e-24	36.07	pentatricopeptide repeat-containing protein At4g21065-like [Ziziphus jujuba] >XP...	[more]
XP_015872293.1	1.0e-23	35.62	pentatricopeptide repeat-containing protein At4g21065-like [Ziziphus jujuba]	[more]
XP_008236936.1	1.0e-23	35.14	PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Prunus mu...	[more]
PON77386.1	1.0e-23	35.62	DYW domain containing protein [Trema orientale]	[more]
XP_030523087.1	1.8e-23	36.24	pentatricopeptide repeat-containing protein At4g21065-like [Rhodamnia argentea]	[more]

BLAST of Clc11G04520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82380	1.7e-13	35.20	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9FJY7	2.3e-13	38.28	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
Q9FI49	4.3e-12	27.10	Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana OX...	[more]
Q9ZVF4	1.6e-11	30.29	Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidop...	[more]
A8MQA3	2.1e-11	22.52	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]

BLAST of Clc11G04520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P3YYC4	3.0e-24	36.07	pentatricopeptide repeat-containing protein At4g21065-like OS=Ziziphus jujuba OX...	[more]
A0A6P3Z5D3	5.0e-24	35.62	pentatricopeptide repeat-containing protein At4g21065-like OS=Ziziphus jujuba OX...	[more]
A0A2P5DVS4	5.0e-24	35.62	DYW domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_240350 P...	[more]
A0A5N5I7Y2	1.1e-23	35.14	Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communi...	[more]
M5VNU1	1.9e-23	35.59	DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_8G091...	[more]

BLAST of Clc11G04520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29760.1	1.2e-14	35.20	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G66520.1	1.6e-14	38.28	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G50990.1	3.0e-13	27.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G01510.1	1.2e-12	30.29	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	1.5e-12	22.52	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 90..197 e-value: 2.2E-8 score: 34.1
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 89..201
None	No IPR available	PANTHER	PTHR47924:SF41	BNAC07G48870D PROTEIN	coord: 89..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G04520.1	Clc11G04520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding