Clc11G04120 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G04120
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pentatricopeptide repeat-containing protein
Location	ClcChr11: 3849244 .. 3850710 (+)
RNA-Seq Expression	Clc11G04120
Synteny	Clc11G04120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCTACTCCAGTTGCTTCGTCCCATTCTTTTGATGTCGAGCCCTCACCATTTTCATATTAGACGAAGTCTTAATTCCTTCGCCAGTGTCTTCCGCCATTCTTCTCAAATCAAAAATCTTAAAGCCATTAAGAAGCTTCACGCCCATTTGCTTAGAACCCACTTCCAATTTTTCTCCCCGAATCTTCATTCTAAGCTTATACTATCCTACTCCCAAATCATCCCCAATTTTGATGCGCAAAGCTTAAACAGCATCTTCAAATGCATCATCCCCAGAAGTTCTTTAACCTTCAACATAATAATTTCTGATTTTTCTCGACATGGGTTTCCGGATTTTGCGTTAATGGCGTTCTCCTTCATGCATTCTAATGGGGTTCCTATTGACACGTATGCACTCTGCAGCTCTTTGAGTGCTTGTTCTCTTGTTCAGAATGCGGTGTATGGAAAACAGATTCACGCATTCGTGGGGAAAACAGGTTGGTTATGTAGTGTTTTTGTTGGGAGTGCGATCGTTGACATGTATGCAAAAAATTCGTTGATTGATGATGCAGTTGAAGTGTTTGATGAAATTCCCATGAAGAATACTGTGTGCGCAAATGCATTGCTGGCTGGGTACGGCGAGGCTAGGATGTGGGTTGAGGGACTTGAATTGTTACGGAAGATGCAGGCTCTCGATTTGAAGTACGACCAGTTCACTTTGTCTGCTTCTTTACGTGCATGCGCTGGTTTATCTGCAATTGCACTAGGTAAGCAGGTACATGCTTATCTACTGCGAACGGTTTATGATATTACAAGTGATGTTCATCTACAAAGCACATTAATTGAAATGTATGGGAAGAGTGGCATGGTGGACAAAGCATGGAATGTCTTCAATTTCGCAGGACTTCGAGAAAAGGAAGATGGGAAAAGGGATATTATAATGTGGACTTCTATGCTTAGTGTATATGGTAGAAACGGGTGTTACAAAAGAGTAATTGAACTGTACAACCAGATGTTGATGGAAGGGAACAAACCAGATAGGGTGGCTTTTGTGACAGTCATATCAGCTTGTGGTCATACTGGCGAGGTGGATCTTGGAGTCAAGTATTTTGACTCCATGCAGACTGATTTTGGGTTGGAACCTGGTCAAGAGCACTACAGTTGTTTGGTTGACTTGCTTTGTAGAGCTGGAGAATTGGAAAAAGCATGGAAGCTCGTAAATGATATCAAAAGTTGGGATCACAATGTTTCCCTGTGGGGAGCTTTACTCCGTGCTTGCTTGGAACAGGGAAATATTAAGTTGGGTAATTTGGCAGCTCGTAAGGCACTTGAATTGGATCCTCAGAATGCTGGAATATTTGTTATGCTATCAAATCTGTATGCTGGTTTTGGCTTGTGGAATGAGATAGAGCATTTGAGGGAATTCGTGAGAAAGGAAGGGCTGTATAAAGATGTTGGATGTAGCTGGATAGAGATCACAAGTTGA

mRNA sequence

ATGCCCCTACTCCAGTTGCTTCGTCCCATTCTTTTGATGTCGAGCCCTCACCATTTTCATATTAGACGAAGTCTTAATTCCTTCGCCAGTGTCTTCCGCCATTCTTCTCAAATCAAAAATCTTAAAGCCATTAAGAAGCTTCACGCCCATTTGCTTAGAACCCACTTCCAATTTTTCTCCCCGAATCTTCATTCTAAGCTTATACTATCCTACTCCCAAATCATCCCCAATTTTGATGCGCAAAGCTTAAACAGCATCTTCAAATGCATCATCCCCAGAAGTTCTTTAACCTTCAACATAATAATTTCTGATTTTTCTCGACATGGGTTTCCGGATTTTGCGTTAATGGCGTTCTCCTTCATGCATTCTAATGGGGTTCCTATTGACACGTATGCACTCTGCAGCTCTTTGAGTGCTTGTTCTCTTGTTCAGAATGCGGTGTATGGAAAACAGATTCACGCATTCGTGGGGAAAACAGGTTGGTTATGTAGTGTTTTTGTTGGGAGTGCGATCGTTGACATGTATGCAAAAAATTCGTTGATTGATGATGCAGTTGAAGTGTTTGATGAAATTCCCATGAAGAATACTGTGTGCGCAAATGCATTGCTGGCTGGGTACGGCGAGGCTAGGATGTGGGTTGAGGGACTTGAATTGTTACGGAAGATGCAGGCTCTCGATTTGAAGTACGACCAGTTCACTTTGTCTGCTTCTTTACGTGCATGCGCTGGTTTATCTGCAATTGCACTAGGTAAGCAGGTACATGCTTATCTACTGCGAACGGTTTATGATATTACAAGTGATGTTCATCTACAAAGCACATTAATTGAAATGTATGGGAAGAGTGGCATGGTGGACAAAGCATGGAATGTCTTCAATTTCGCAGGACTTCGAGAAAAGGAAGATGGGAAAAGGGATATTATAATGTGGACTTCTATGCTTAGTGTATATGGTAGAAACGGGTGTTACAAAAGAGTAATTGAACTGTACAACCAGATGTTGATGGAAGGGAACAAACCAGATAGGGTGGCTTTTGTGACAGTCATATCAGCTTGTGGTCATACTGGCGAGGTGGATCTTGGAGTCAAGTATTTTGACTCCATGCAGACTGATTTTGGGTTGGAACCTGGTCAAGAGCACTACAGTTGTTTGGTTGACTTGCTTTGTAGAGCTGGAGAATTGGAAAAAGCATGGAAGCTCGTAAATGATATCAAAAGTTGGGATCACAATGTTTCCCTGTGGGGAGCTTTACTCCGTGCTTGCTTGGAACAGGGAAATATTAAGTTGGGTAATTTGGCAGCTCGTAAGGCACTTGAATTGGATCCTCAGAATGCTGGAATATTTGTTATGCTATCAAATCTGTATGCTGGTTTTGGCTTGTGGAATGAGATAGAGCATTTGAGGGAATTCGTGAGAAAGGAAGGGCTGTATAAAGATGTTGGATGTAGCTGGATAGAGATCACAAGTTGA

Coding sequence (CDS)

ATGCCCCTACTCCAGTTGCTTCGTCCCATTCTTTTGATGTCGAGCCCTCACCATTTTCATATTAGACGAAGTCTTAATTCCTTCGCCAGTGTCTTCCGCCATTCTTCTCAAATCAAAAATCTTAAAGCCATTAAGAAGCTTCACGCCCATTTGCTTAGAACCCACTTCCAATTTTTCTCCCCGAATCTTCATTCTAAGCTTATACTATCCTACTCCCAAATCATCCCCAATTTTGATGCGCAAAGCTTAAACAGCATCTTCAAATGCATCATCCCCAGAAGTTCTTTAACCTTCAACATAATAATTTCTGATTTTTCTCGACATGGGTTTCCGGATTTTGCGTTAATGGCGTTCTCCTTCATGCATTCTAATGGGGTTCCTATTGACACGTATGCACTCTGCAGCTCTTTGAGTGCTTGTTCTCTTGTTCAGAATGCGGTGTATGGAAAACAGATTCACGCATTCGTGGGGAAAACAGGTTGGTTATGTAGTGTTTTTGTTGGGAGTGCGATCGTTGACATGTATGCAAAAAATTCGTTGATTGATGATGCAGTTGAAGTGTTTGATGAAATTCCCATGAAGAATACTGTGTGCGCAAATGCATTGCTGGCTGGGTACGGCGAGGCTAGGATGTGGGTTGAGGGACTTGAATTGTTACGGAAGATGCAGGCTCTCGATTTGAAGTACGACCAGTTCACTTTGTCTGCTTCTTTACGTGCATGCGCTGGTTTATCTGCAATTGCACTAGGTAAGCAGGTACATGCTTATCTACTGCGAACGGTTTATGATATTACAAGTGATGTTCATCTACAAAGCACATTAATTGAAATGTATGGGAAGAGTGGCATGGTGGACAAAGCATGGAATGTCTTCAATTTCGCAGGACTTCGAGAAAAGGAAGATGGGAAAAGGGATATTATAATGTGGACTTCTATGCTTAGTGTATATGGTAGAAACGGGTGTTACAAAAGAGTAATTGAACTGTACAACCAGATGTTGATGGAAGGGAACAAACCAGATAGGGTGGCTTTTGTGACAGTCATATCAGCTTGTGGTCATACTGGCGAGGTGGATCTTGGAGTCAAGTATTTTGACTCCATGCAGACTGATTTTGGGTTGGAACCTGGTCAAGAGCACTACAGTTGTTTGGTTGACTTGCTTTGTAGAGCTGGAGAATTGGAAAAAGCATGGAAGCTCGTAAATGATATCAAAAGTTGGGATCACAATGTTTCCCTGTGGGGAGCTTTACTCCGTGCTTGCTTGGAACAGGGAAATATTAAGTTGGGTAATTTGGCAGCTCGTAAGGCACTTGAATTGGATCCTCAGAATGCTGGAATATTTGTTATGCTATCAAATCTGTATGCTGGTTTTGGCTTGTGGAATGAGATAGAGCATTTGAGGGAATTCGTGAGAAAGGAAGGGCTGTATAAAGATGTTGGATGTAGCTGGATAGAGATCACAAGTTGA

Protein sequence

MPLLQLLRPILLMSSPHHFHIRRSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQSLNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCANALLAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS

Homology

[Close]

BLAST of Clc11G04120 vs. NCBI nr
Match: XP_038901137.1 (pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901138.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901139.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901140.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901141.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901143.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 922.2 bits (2382), Expect = 1.9e-264
Identity = 449/476 (94.33%), Postives = 465/476 (97.69%), Query Frame = 0


Query: 13  MSSPHHFHIRRSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYS 72
           MSSPHHF+IRRSL+SFAS FRHS Q KNLKAIK++HAHLLRT FQFFSPNLHSKLILSYS
Sbjct: 1   MSSPHHFYIRRSLDSFASFFRHSCQSKNLKAIKRIHAHLLRTRFQFFSPNLHSKLILSYS 60

Query: 73  QIIPNFDAQSLNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYA 132
           QI PNFDAQSLNSIFKCIIPR SL FN+IISDFSRHGFPDFALMAFSFMHSNGVPIDTYA
Sbjct: 61  QINPNFDAQSLNSIFKCIIPRRSLNFNVIISDFSRHGFPDFALMAFSFMHSNGVPIDTYA 120

Query: 133 LCSSLSACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIP 192
           LCSSL++CSLVQN VYGKQIHAFVGK+GWLCSVFVGSAIVDMYAKNSLI+DAVEVFDEIP
Sbjct: 121 LCSSLTSCSLVQNGVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVEVFDEIP 180

Query: 193 MKNTVCANALLAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQ 252
           MKNTVCANALLAGYGEARMWVEGLELLR+MQALDLKYDQFTLSASLRACAGLSAIALGKQ
Sbjct: 181 MKNTVCANALLAGYGEARMWVEGLELLREMQALDLKYDQFTLSASLRACAGLSAIALGKQ 240

Query: 253 VHAYLLRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSM 312
           VHAYLLRTVYDIT DVHLQSTLIEMYGKSGMV+KAWNVFNFAGLR+KEDGKRDIIMWTSM
Sbjct: 241 VHAYLLRTVYDITCDVHLQSTLIEMYGKSGMVEKAWNVFNFAGLRQKEDGKRDIIMWTSM 300

Query: 313 LSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFG 372
           LSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEV+LGVKYFDSMQ+DFG
Sbjct: 301 LSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFG 360

Query: 373 LEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLA 432
           LEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWD+NVSLWGALLRACLEQGNIKLGNLA
Sbjct: 361 LEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDYNVSLWGALLRACLEQGNIKLGNLA 420

Query: 433 ARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 489
           A +ALELDPQNAGIFVMLSNLYAGFGLWNEIE LREFVRKEGLYKDVGCSWIEITS
Sbjct: 421 AHRALELDPQNAGIFVMLSNLYAGFGLWNEIERLREFVRKEGLYKDVGCSWIEITS 476

[Close]

BLAST of Clc11G04120 vs. NCBI nr
Match: XP_008457622.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo] >XP_008457623.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo] >XP_016902170.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo] >KAA0045664.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99619.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 892.9 bits (2306), Expect = 1.2e-255
Identity = 433/466 (92.92%), Postives = 452/466 (97.00%), Query Frame = 0


Query: 23  RSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS 82
           RSL+SFAS F HSSQIKNLK IKK+HAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS
Sbjct: 4   RSLDSFASFFGHSSQIKNLKTIKKIHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS 63

Query: 83  LNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSL 142
           LNSIFKCIIPR+SLTFN++ISDFSRHGFPDFALM FSFMHSNGVPIDTYALCSSL+ CS 
Sbjct: 64  LNSIFKCIIPRTSLTFNVMISDFSRHGFPDFALMGFSFMHSNGVPIDTYALCSSLNGCSF 123

Query: 143 VQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCANAL 202
           VQN VYGKQIHAFVGK+GWLCSVFVGSAIVDMYAKNSLI DAVEVFDE+PMKNTVCANAL
Sbjct: 124 VQNVVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANAL 183

Query: 203 LAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVY 262
           LAGYGEARMWVEGLELLRKMQ LDLKYDQFTLSASLRACAGLSAIALGKQ+HAY+LRTVY
Sbjct: 184 LAGYGEARMWVEGLELLRKMQGLDLKYDQFTLSASLRACAGLSAIALGKQLHAYILRTVY 243

Query: 263 DITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYGRNGCY 322
           DITSDVHLQSTL+EMYGK+GMV+KAWNVFNFAGL  +EDGKRDIIMWTSMLSVYGRNGCY
Sbjct: 244 DITSDVHLQSTLVEMYGKNGMVEKAWNVFNFAGLGHREDGKRDIIMWTSMLSVYGRNGCY 303

Query: 323 KRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSC 382
           KRVIELYNQMLMEG KPDRVAFVTVISACGHTGEV+LGVKYFDSMQ+DFGLEPGQEHYSC
Sbjct: 304 KRVIELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSC 363

Query: 383 LVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKALELDPQ 442
           L DLLCRAGELEKAWKLVNDIKS D+NVSLWGALLRACLEQGNIKLGNLAAR+ALELDPQ
Sbjct: 364 LADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQ 423

Query: 443 NAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 489
           NAGIF+MLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS
Sbjct: 424 NAGIFIMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 469

[Close]

BLAST of Clc11G04120 vs. NCBI nr
Match: XP_023512242.1 (pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 866.7 bits (2238), Expect = 9.6e-248
Identity = 426/486 (87.65%), Postives = 455/486 (93.62%), Query Frame = 0


Query: 3   LLQLLRPILLMSSPHHFHIRRSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPN 62
           LL +   IL MS+ HHFHIRRSL+SFAS  RHSSQI+NLKAIKKLHA LLRTHFQF SP+
Sbjct: 4   LLPVASSILSMSNLHHFHIRRSLDSFASFLRHSSQIQNLKAIKKLHAQLLRTHFQFSSPD 63

Query: 63  LHSKLILSYSQIIPNFDAQSLNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMH 122
           LHSKLILSYSQI+PNFDAQSL+S FKCIIPRSSLTFN++ISDF RHGFPDF+L+A SFMH
Sbjct: 64  LHSKLILSYSQIVPNFDAQSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLIALSFMH 123

Query: 123 SNGVPIDTYALCSSLSACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLID 182
           SNGVPIDTYALCSSLSACSLVQNAVYG+Q+HAFVGK+GWLCSVFVGSAIVDMYAKNSLI+
Sbjct: 124 SNGVPIDTYALCSSLSACSLVQNAVYGQQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLIN 183

Query: 183 DAVEVFDEIPMKNTVCANALLAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACA 242
           DAV+VFDEIP+KNTVCANALLAGYG+A MW++GLELLRKM  L+LKYDQFTLSASLRAC 
Sbjct: 184 DAVKVFDEIPVKNTVCANALLAGYGDAGMWIDGLELLRKMHVLNLKYDQFTLSASLRACT 243

Query: 243 GLSAIALGKQVHAYLLRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDG 302
           GLSAIALGKQVHAYLLRTVYDI+SDVHLQSTLIEMYGKSGMV+KAWNVF FAGL  KEDG
Sbjct: 244 GLSAIALGKQVHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGHKEDG 303

Query: 303 KRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVK 362
           KRDIIMWTSMLS YGRNGCY RVIELYNQMLMEG KPDRVAFVTVISACGHTG+V+LGVK
Sbjct: 304 KRDIIMWTSMLSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVK 363

Query: 363 YFDSMQTDFGLEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLE 422
           YFDSMQ+ FGLEPGQEHYSCLVDLLCRAGEL+KAWKLV+DIKS DHNV LWGALLRACLE
Sbjct: 364 YFDSMQSVFGLEPGQEHYSCLVDLLCRAGELDKAWKLVSDIKSSDHNVPLWGALLRACLE 423

Query: 423 QGNIKLGNLAARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCS 482
            GNIKLGNLAAR ALELDP NAGIFVMLSNLYAGFGLWNEIEHLREFVR+EGLYK VGCS
Sbjct: 424 HGNIKLGNLAARMALELDPTNAGIFVMLSNLYAGFGLWNEIEHLREFVRREGLYKGVGCS 483

Query: 483 WIEITS 489
           WIE TS
Sbjct: 484 WIETTS 489

[Close]

BLAST of Clc11G04120 vs. NCBI nr
Match: KAG6571067.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 863.2 bits (2229), Expect = 1.1e-246
Identity = 421/476 (88.45%), Postives = 450/476 (94.54%), Query Frame = 0


Query: 13  MSSPHHFHIRRSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYS 72
           MSSPHHFHIRRSL+SFAS  RH+SQI+NLKAIKKLHA LLRTHFQF SP+LHSKLILSYS
Sbjct: 1   MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS 60

Query: 73  QIIPNFDAQSLNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYA 132
           QIIPNFDA SL+S FKCIIPRSSLTFN++ISDF RHGFPDF+LMA SFMHSNGVPIDTYA
Sbjct: 61  QIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYA 120

Query: 133 LCSSLSACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIP 192
           LCSSLSACSLVQN VYGKQ+HAFVGK+GWLCSVFVGSAIVDMYAKNSLI+DAV+VFDEIP
Sbjct: 121 LCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP 180

Query: 193 MKNTVCANALLAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQ 252
           +KNTVCANALLAGYG+A MW++GLELLRKM  LDLKYDQFTLSASLRAC GLSAIALGKQ
Sbjct: 181 VKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQ 240

Query: 253 VHAYLLRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSM 312
           VHAYLLRTVYDI+SDVHLQSTLIEMYGKSGMV+KAWNVF FAGL +KEDGKRDIIMWTSM
Sbjct: 241 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 300

Query: 313 LSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFG 372
           LS YGRNGCY RVIELYNQMLMEG KPDRVAFVTVISACGHTG+V+LGVKYFDSMQ+ FG
Sbjct: 301 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 360

Query: 373 LEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLA 432
           LEPGQEHYSCLVDLLCRAGELEKAWKLV+ +KS D+NV LWGALLRACLE GNIKLGNLA
Sbjct: 361 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA 420

Query: 433 ARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 489
           AR+ALELDP NAGIFVMLSNLY+GFGLWNEIEHLREFVR+EGL+K VGCSWIE TS
Sbjct: 421 ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLREFVRREGLHKGVGCSWIETTS 476

[Close]

BLAST of Clc11G04120 vs. NCBI nr
Match: XP_022944055.1 (pentatricopeptide repeat-containing protein At1g50270-like [Cucurbita moschata] >KAG7010880.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 860.5 bits (2222), Expect = 6.9e-246
Identity = 420/476 (88.24%), Postives = 449/476 (94.33%), Query Frame = 0


Query: 13  MSSPHHFHIRRSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYS 72
           MSSPHHFHIRRSL+SFAS  RH+SQI+NLKAIKKLHA LLRTHFQF SP+LHSKLILSYS
Sbjct: 1   MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS 60

Query: 73  QIIPNFDAQSLNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYA 132
           QIIPNFDA SL+S FKCIIPRSSLTFN++ISDF RHGFPDF+LMA SFMHSNGVPIDTYA
Sbjct: 61  QIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYA 120

Query: 133 LCSSLSACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIP 192
           LCSSLSACSLVQN VYGKQ+HAFVGK+GWLCSVFVGSAIVDMYAKNSLI+DAV+VFDEIP
Sbjct: 121 LCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP 180

Query: 193 MKNTVCANALLAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQ 252
           +KNTVCANALLAGYG+A MW++GLELLRKM  LDLKYDQFTLSASLRAC GLSAIALGKQ
Sbjct: 181 VKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQ 240

Query: 253 VHAYLLRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSM 312
           VHAYLLRTVYDI+SDVHLQSTLIEMYGKSGMV+KAWNVF FAGL +KEDGKRDIIMWTSM
Sbjct: 241 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 300

Query: 313 LSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFG 372
           LS YGRNGCY RVIELYNQMLMEG KPDRVAFVTVISACGHTG+V+LGVKYFDSMQ+ FG
Sbjct: 301 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 360

Query: 373 LEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLA 432
           LEPGQEHYSCLVDLLCRAGELEKAWKLV+ +KS D+NV LWGALLRACLE GNIKLGNLA
Sbjct: 361 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA 420

Query: 433 ARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 489
           AR+ALELDP NAGIFVMLSNLY+GFGLWNEIEHLR FVR+EGL+K VGCSWIE TS
Sbjct: 421 ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 476

[Close]

BLAST of Clc11G04120 vs. ExPASy Swiss-Prot
Match: Q9LZ19 (Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 2.0e-70
Identity = 141/401 (35.16%), Postives = 249/401 (62.09%), Query Frame = 0


Query: 86  IFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSLVQN 145
           +F  ++ RS +++N +I  ++R+     AL  F  M + G     + + S LSAC +  +
Sbjct: 118 VFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCD 177

Query: 146 AVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCANALLAG 205
           A+  K++H    KT    +++VG+A++D+YAK  +I DAV+VF+ +  K++V  ++++AG
Sbjct: 178 ALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAG 237

Query: 206 YGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVYDIT 265
           Y + + + E L L R+ Q + L+ +QFTLS+ + AC+ L+A+  GKQ+HA + ++ +   
Sbjct: 238 YVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFG-- 297

Query: 266 SDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYGRNGCYKRV 325
           S+V + S+ ++MY K G + +++ +F+       E  ++++ +W +++S + ++   K V
Sbjct: 298 SNVFVASSAVDMYAKCGSLRESYIIFS-------EVQEKNLELWNTIISGFAKHARPKEV 357

Query: 326 IELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSCLVD 385
           + L+ +M  +G  P+ V F +++S CGHTG V+ G ++F  M+T +GL P   HYSC+VD
Sbjct: 358 MILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVD 417

Query: 386 LLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKALELDPQNAG 445
           +L RAG L +A++L+  I  +D   S+WG+LL +C    N++L  +AA K  EL+P+NAG
Sbjct: 418 ILGRAGLLSEAYELIKSI-PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAG 477

Query: 446 IFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEI 487
             V+LSN+YA    W EI   R+ +R   + K  G SWI+I
Sbjct: 478 NHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDI 508

[Close]

BLAST of Clc11G04120 vs. ExPASy Swiss-Prot
Match: Q9SN39 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.9e-69
Identity = 134/409 (32.76%), Postives = 237/409 (57.95%), Query Frame = 0


Query: 79  DAQSLNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLS 138
           D  S  ++F+ +  RS +++  +I+ ++R G    A+  F  M   G+  D Y + + L+
Sbjct: 346 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405

Query: 139 ACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVC 198
            C+  +    GK++H ++ +      +FV +A++DMYAK   + +A  VF E+ +K+ + 
Sbjct: 406 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 465

Query: 199 ANALLAGYGEARMWVEGLELLR-KMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYL 258
            N ++ GY +     E L L    ++      D+ T++  L ACA LSA   G+++H Y+
Sbjct: 466 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 525

Query: 259 LRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYG 318
           +R  Y   SD H+ ++L++MY K G +  A  +F+       +   +D++ WT M++ YG
Sbjct: 526 MRNGY--FSDRHVANSLVDMYAKCGALLLAHMLFD-------DIASKDLVSWTVMIAGYG 585

Query: 319 RNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQ 378
            +G  K  I L+NQM   G + D ++FV+++ AC H+G VD G ++F+ M+ +  +EP  
Sbjct: 586 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 645

Query: 379 EHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKAL 438
           EHY+C+VD+L R G+L KA++ + ++     + ++WGALL  C    ++KL    A K  
Sbjct: 646 EHYACIVDMLARTGDLIKAYRFIENMPI-PPDATIWGALLCGCRIHHDVKLAEKVAEKVF 705

Query: 439 ELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEI 487
           EL+P+N G +V+++N+YA    W +++ LR+ + + GL K+ GCSWIEI
Sbjct: 706 ELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEI 744

[Close]

BLAST of Clc11G04120 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.4e-69
Identity = 163/496 (32.86%), Postives = 267/496 (53.83%), Query Frame = 0


Query: 27  SFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQSLNSI 86
           SFASV    S + ++    ++H+ + ++ F      + S L+  YS+     DAQ    +
Sbjct: 154 SFASVLSACSGLNDMNKGVQVHSLIAKSPF-LSDVYIGSALVDMYSKCGNVNDAQ---RV 213

Query: 87  FKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSLVQNA 146
           F  +  R+ +++N +I+ F ++G    AL  F  M  + V  D   L S +SAC+ +   
Sbjct: 214 FDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAI 273

Query: 147 VYGKQIHAFVGKTGWLCS-VFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCA------ 206
             G+++H  V K   L + + + +A VDMYAK S I +A  +FD +P++N +        
Sbjct: 274 KVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISG 333

Query: 207 -------------------------NALLAGYGEARMWVEGLELLRKMQALDLKYDQFTL 266
                                    NAL+AGY +     E L L   ++   +    ++ 
Sbjct: 334 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSF 393

Query: 267 SASLRACAGLSAIALGKQVHAYLLRTVYDITS----DVHLQSTLIEMYGKSGMVDKAWNV 326
           +  L+ACA L+ + LG Q H ++L+  +   S    D+ + ++LI+MY K G V++ + V
Sbjct: 394 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLV 453

Query: 327 FNFAGLREKEDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISA 386
           F       ++  +RD + W +M+  + +NG     +EL+ +ML  G KPD +  + V+SA
Sbjct: 454 F-------RKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSA 513

Query: 387 CGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNV 446
           CGH G V+ G  YF SM  DFG+ P ++HY+C+VDLL RAG LE+A  ++ ++     +V
Sbjct: 514 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSV 573

Query: 447 SLWGALLRACLEQGNIKLGNLAARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFV 487
            +WG+LL AC    NI LG   A K LE++P N+G +V+LSN+YA  G W ++ ++R+ +
Sbjct: 574 -IWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSM 633

[Close]

BLAST of Clc11G04120 vs. ExPASy Swiss-Prot
Match: P93005 (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.3e-66
Identity = 144/427 (33.72%), Postives = 239/427 (55.97%), Query Frame = 0


Query: 63  LHSKLILSYSQIIPNFDAQSLN---SIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFS 122
           L + L+  YS+       +SLN    +F     R+S+T++ +++ +S++G    A+  FS
Sbjct: 258 LSNALVTMYSK------CESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFS 317

Query: 123 FMHSNGVPIDTYALCSSLSACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNS 182
            M S G+    Y +   L+ACS +     GKQ+H+F+ K G+   +F  +A+VDMYAK  
Sbjct: 318 RMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAG 377

Query: 183 LIDDAVEVFDEIPMKNTVCANALLAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLR 242
            + DA + FD +  ++     +L++GY +     E L L R+M+   +  +  T+++ L+
Sbjct: 378 CLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLK 437

Query: 243 ACAGLSAIALGKQVHAYLLRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREK 302
           AC+ L+ + LGKQVH + ++  + +  +V + S L  MY K G ++    VF       +
Sbjct: 438 ACSSLATLELGKQVHGHTIKHGFGL--EVPIGSALSTMYSKCGSLEDGNLVF-------R 497

Query: 303 EDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDL 362
               +D++ W +M+S    NG     +EL+ +ML EG +PD V FV +ISAC H G V+ 
Sbjct: 498 RTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVER 557

Query: 363 GVKYFDSMQTDFGLEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRA 422
           G  YF+ M    GL+P  +HY+C+VDLL RAG+L++A + + +  + DH + LW  LL A
Sbjct: 558 GWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFI-ESANIDHGLCLWRILLSA 617

Query: 423 CLEQGNIKLGNLAARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDV 482
           C   G  +LG  A  K + L  + +  +V LS +Y   G   ++E + + +R  G+ K+V
Sbjct: 618 CKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEV 668

Query: 483 GCSWIEI 487
           GCSWIE+
Sbjct: 678 GCSWIEL 668

[Close]

BLAST of Clc11G04120 vs. ExPASy Swiss-Prot
Match: Q5G1T1 (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.9e-66
Identity = 144/462 (31.17%), Postives = 249/462 (53.90%), Query Frame = 0


Query: 27  SFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQSLNSI 86
           + +SVF   ++++NL   K+LH+  +R+       ++   L+  Y++   +        +
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSG---LVDDVECSLVDMYAKCSADGSVDDCRKV 330

Query: 87  FKCIIPRSSLTFNIIISDFSRH-GFPDFALMAFSFMHSNG-VPIDTYALCSSLSACSLVQ 146
           F  +   S +++  +I+ + ++      A+  FS M + G V  + +   S+  AC  + 
Sbjct: 331 FDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLS 390

Query: 147 NAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCANALLA 206
           +   GKQ+     K G   +  V ++++ M+ K+  ++DA   F+ +  KN V  N  L 
Sbjct: 391 DPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLD 450

Query: 207 GYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVYDI 266
           G      + +  +LL ++   +L    FT ++ L   A + +I  G+Q+H+ +++    +
Sbjct: 451 GTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVK--LGL 510

Query: 267 TSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYGRNGCYKR 326
           + +  + + LI MY K G +D A  VFNF          R++I WTSM++ + ++G   R
Sbjct: 511 SCNQPVCNALISMYSKCGSIDTASRVFNFM-------ENRNVISWTSMITGFAKHGFAIR 570

Query: 327 VIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSCLV 386
           V+E +NQM+ EG KP+ V +V ++SAC H G V  G ++F+SM  D  ++P  EHY+C+V
Sbjct: 571 VLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMV 630

Query: 387 DLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKALELDPQNA 446
           DLLCRAG L  A++ +N +  +  +V +W   L AC    N +LG LAARK LELDP   
Sbjct: 631 DLLCRAGLLTDAFEFINTM-PFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEP 690

Query: 447 GIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEI 487
             ++ LSN+YA  G W E   +R  +++  L K+ GCSWIE+
Sbjct: 691 AAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEV 719

[Close]

BLAST of Clc11G04120 vs. ExPASy TrEMBL
Match: A0A1S3C6K8 (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=3656 GN=LOC103497272 PE=4 SV=1)

HSP 1 Score: 892.9 bits (2306), Expect = 6.1e-256
Identity = 433/466 (92.92%), Postives = 452/466 (97.00%), Query Frame = 0


Query: 23  RSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS 82
           RSL+SFAS F HSSQIKNLK IKK+HAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS
Sbjct: 4   RSLDSFASFFGHSSQIKNLKTIKKIHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS 63

Query: 83  LNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSL 142
           LNSIFKCIIPR+SLTFN++ISDFSRHGFPDFALM FSFMHSNGVPIDTYALCSSL+ CS 
Sbjct: 64  LNSIFKCIIPRTSLTFNVMISDFSRHGFPDFALMGFSFMHSNGVPIDTYALCSSLNGCSF 123

Query: 143 VQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCANAL 202
           VQN VYGKQIHAFVGK+GWLCSVFVGSAIVDMYAKNSLI DAVEVFDE+PMKNTVCANAL
Sbjct: 124 VQNVVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANAL 183

Query: 203 LAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVY 262
           LAGYGEARMWVEGLELLRKMQ LDLKYDQFTLSASLRACAGLSAIALGKQ+HAY+LRTVY
Sbjct: 184 LAGYGEARMWVEGLELLRKMQGLDLKYDQFTLSASLRACAGLSAIALGKQLHAYILRTVY 243

Query: 263 DITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYGRNGCY 322
           DITSDVHLQSTL+EMYGK+GMV+KAWNVFNFAGL  +EDGKRDIIMWTSMLSVYGRNGCY
Sbjct: 244 DITSDVHLQSTLVEMYGKNGMVEKAWNVFNFAGLGHREDGKRDIIMWTSMLSVYGRNGCY 303

Query: 323 KRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSC 382
           KRVIELYNQMLMEG KPDRVAFVTVISACGHTGEV+LGVKYFDSMQ+DFGLEPGQEHYSC
Sbjct: 304 KRVIELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSC 363

Query: 383 LVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKALELDPQ 442
           L DLLCRAGELEKAWKLVNDIKS D+NVSLWGALLRACLEQGNIKLGNLAAR+ALELDPQ
Sbjct: 364 LADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQ 423

Query: 443 NAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 489
           NAGIF+MLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS
Sbjct: 424 NAGIFIMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 469

[Close]

BLAST of Clc11G04120 vs. ExPASy TrEMBL
Match: A0A5D3BKX2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001930 PE=4 SV=1)

HSP 1 Score: 892.9 bits (2306), Expect = 6.1e-256
Identity = 433/466 (92.92%), Postives = 452/466 (97.00%), Query Frame = 0


Query: 23  RSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS 82
           RSL+SFAS F HSSQIKNLK IKK+HAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS
Sbjct: 4   RSLDSFASFFGHSSQIKNLKTIKKIHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS 63

Query: 83  LNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSL 142
           LNSIFKCIIPR+SLTFN++ISDFSRHGFPDFALM FSFMHSNGVPIDTYALCSSL+ CS 
Sbjct: 64  LNSIFKCIIPRTSLTFNVMISDFSRHGFPDFALMGFSFMHSNGVPIDTYALCSSLNGCSF 123

Query: 143 VQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCANAL 202
           VQN VYGKQIHAFVGK+GWLCSVFVGSAIVDMYAKNSLI DAVEVFDE+PMKNTVCANAL
Sbjct: 124 VQNVVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANAL 183

Query: 203 LAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVY 262
           LAGYGEARMWVEGLELLRKMQ LDLKYDQFTLSASLRACAGLSAIALGKQ+HAY+LRTVY
Sbjct: 184 LAGYGEARMWVEGLELLRKMQGLDLKYDQFTLSASLRACAGLSAIALGKQLHAYILRTVY 243

Query: 263 DITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYGRNGCY 322
           DITSDVHLQSTL+EMYGK+GMV+KAWNVFNFAGL  +EDGKRDIIMWTSMLSVYGRNGCY
Sbjct: 244 DITSDVHLQSTLVEMYGKNGMVEKAWNVFNFAGLGHREDGKRDIIMWTSMLSVYGRNGCY 303

Query: 323 KRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSC 382
           KRVIELYNQMLMEG KPDRVAFVTVISACGHTGEV+LGVKYFDSMQ+DFGLEPGQEHYSC
Sbjct: 304 KRVIELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSC 363

Query: 383 LVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKALELDPQ 442
           L DLLCRAGELEKAWKLVNDIKS D+NVSLWGALLRACLEQGNIKLGNLAAR+ALELDPQ
Sbjct: 364 LADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQ 423

Query: 443 NAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 489
           NAGIF+MLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS
Sbjct: 424 NAGIFIMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 469

[Close]

BLAST of Clc11G04120 vs. ExPASy TrEMBL
Match: A0A0A0LLD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258600 PE=4 SV=1)

HSP 1 Score: 870.9 bits (2249), Expect = 2.5e-249
Identity = 423/466 (90.77%), Postives = 443/466 (95.06%), Query Frame = 0


Query: 23  RSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQS 82
           RSL+SFAS F HSSQ KNLK IKK+HAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDA+S
Sbjct: 4   RSLDSFASFFHHSSQFKNLKTIKKIHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAKS 63

Query: 83  LNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSL 142
           LN IF+CIIPR+SLTFN++ISDFSRHGF DFALM FSFMHSNGVPIDTYALCSSL+ CS 
Sbjct: 64  LNGIFQCIIPRTSLTFNVMISDFSRHGFQDFALMGFSFMHSNGVPIDTYALCSSLNGCSF 123

Query: 143 VQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCANAL 202
           VQN VYGKQIHAFVGK+GWLCSVFVGSAIVDMYAKNSLI DAVEVFDE+PMKNTVCANAL
Sbjct: 124 VQNVVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANAL 183

Query: 203 LAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVY 262
           LAGYGEARMWVEGLELLRKMQ LDLKYDQFTLSASLRAC GLSAIALGKQVHAY+LRTVY
Sbjct: 184 LAGYGEARMWVEGLELLRKMQGLDLKYDQFTLSASLRACTGLSAIALGKQVHAYILRTVY 243

Query: 263 DITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYGRNGCY 322
           DITSDVHLQSTL+EMYGK+GMV+KAWNVF FAGL  +EDGKRDIIMWTSMLSVYGRNGCY
Sbjct: 244 DITSDVHLQSTLVEMYGKNGMVEKAWNVFKFAGLGRQEDGKRDIIMWTSMLSVYGRNGCY 303

Query: 323 KRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSC 382
           KRVIELYNQMLMEG KPDRVAFVTVISACGHTGEV+LGV+YFDSMQ+DFGLEPGQEHYSC
Sbjct: 304 KRVIELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVQYFDSMQSDFGLEPGQEHYSC 363

Query: 383 LVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKALELDPQ 442
           L DLLCRAGELEKAWKLVNDIKS D+NVSLWGALLRACLEQGNIKLGNLAAR+ALELDPQ
Sbjct: 364 LADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQ 423

Query: 443 NAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 489
           N GI VMLSNLYAGFGLWNEIEHLRE VRKEGLYKDV CSWIEITS
Sbjct: 424 NTGILVMLSNLYAGFGLWNEIEHLRESVRKEGLYKDVACSWIEITS 469

[Close]

BLAST of Clc11G04120 vs. ExPASy TrEMBL
Match: A0A6J1FYF9 (pentatricopeptide repeat-containing protein At1g50270-like OS=Cucurbita moschata OX=3662 GN=LOC111448605 PE=4 SV=1)

HSP 1 Score: 860.5 bits (2222), Expect = 3.3e-246
Identity = 420/476 (88.24%), Postives = 449/476 (94.33%), Query Frame = 0


Query: 13  MSSPHHFHIRRSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYS 72
           MSSPHHFHIRRSL+SFAS  RH+SQI+NLKAIKKLHA LLRTHFQF SP+LHSKLILSYS
Sbjct: 1   MSSPHHFHIRRSLDSFASFLRHASQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYS 60

Query: 73  QIIPNFDAQSLNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYA 132
           QIIPNFDA SL+S FKCIIPRSSLTFN++ISDF RHGFPDF+LMA SFMHSNGVPIDTYA
Sbjct: 61  QIIPNFDALSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYA 120

Query: 133 LCSSLSACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIP 192
           LCSSLSACSLVQN VYGKQ+HAFVGK+GWLCSVFVGSAIVDMYAKNSLI+DAV+VFDEIP
Sbjct: 121 LCSSLSACSLVQNPVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIP 180

Query: 193 MKNTVCANALLAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQ 252
           +KNTVCANALLAGYG+A MW++GLELLRKM  LDLKYDQFTLSASLRAC GLSAIALGKQ
Sbjct: 181 VKNTVCANALLAGYGDASMWIDGLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQ 240

Query: 253 VHAYLLRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSM 312
           VHAYLLRTVYDI+SDVHLQSTLIEMYGKSGMV+KAWNVF FAGL +KEDGKRDIIMWTSM
Sbjct: 241 VHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSM 300

Query: 313 LSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFG 372
           LS YGRNGCY RVIELYNQMLMEG KPDRVAFVTVISACGHTG+V+LGVKYFDSMQ+ FG
Sbjct: 301 LSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFG 360

Query: 373 LEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLA 432
           LEPGQEHYSCLVDLLCRAGELEKAWKLV+ +KS D+NV LWGALLRACLE GNIKLGNLA
Sbjct: 361 LEPGQEHYSCLVDLLCRAGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLA 420

Query: 433 ARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 489
           AR+ALELDP NAGIFVMLSNLY+GFGLWNEIEHLR FVR+EGL+K VGCSWIE TS
Sbjct: 421 ARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLRGFVRREGLHKGVGCSWIETTS 476

[Close]

BLAST of Clc11G04120 vs. ExPASy TrEMBL
Match: A0A6J1CYG8 (pentatricopeptide repeat-containing protein At4g21300-like OS=Momordica charantia OX=3673 GN=LOC111015438 PE=4 SV=1)

HSP 1 Score: 827.0 bits (2135), Expect = 4.1e-236
Identity = 403/476 (84.66%), Postives = 439/476 (92.23%), Query Frame = 0


Query: 13  MSSPHHFHIRRSLNSFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYS 72
           MS  HHFHI++SL+ F+S  RHS++ KNL  IKKLHAHL+RTHFQFFSP+LH+KLILSYS
Sbjct: 1   MSRSHHFHIKQSLDFFSSFLRHSTETKNLTPIKKLHAHLIRTHFQFFSPSLHTKLILSYS 60

Query: 73  QIIPNFDAQSLNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYA 132
           +  PNF AQSL+S+FK IIPRSSLTFNIII+DF R+G  DFALMAFSFMHSNGVPID+YA
Sbjct: 61  RANPNFGAQSLSSLFKFIIPRSSLTFNIIIADFCRNGSADFALMAFSFMHSNGVPIDSYA 120

Query: 133 LCSSLSACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIP 192
           LCS+LSACSLVQN ++GKQ+HAFVGK+GWL SVFVGSAIVD+YAKN LI DAVEVFDEIP
Sbjct: 121 LCSTLSACSLVQNVMFGKQMHAFVGKSGWLSSVFVGSAIVDLYAKNGLIGDAVEVFDEIP 180

Query: 193 MKNTVCANALLAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQ 252
           MKNTVCANALLAGYGEA+MWVEGLELLRKM  LDLKYD FTLSASLR CA LSAIALGKQ
Sbjct: 181 MKNTVCANALLAGYGEAKMWVEGLELLRKMYVLDLKYDHFTLSASLRTCACLSAIALGKQ 240

Query: 253 VHAYLLRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSM 312
           VHAYLLR +YDI SDVHLQSTLIEMYGKSGMV+KAWNVFNFAGL +KEDGKRDII+WTS+
Sbjct: 241 VHAYLLRMIYDIPSDVHLQSTLIEMYGKSGMVEKAWNVFNFAGLEQKEDGKRDIIVWTSI 300

Query: 313 LSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFG 372
           LSVYGRNGCYKRVIELY+QMLMEG KPDRVAFVTVISACGHTGEVDLG+KYFDSMQ+DFG
Sbjct: 301 LSVYGRNGCYKRVIELYSQMLMEGIKPDRVAFVTVISACGHTGEVDLGIKYFDSMQSDFG 360

Query: 373 LEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLA 432
           L+PGQEHYSCLVDLLCRAGEL+KAWKLVND+KS   NVSLWGALLRACLE G I+LGNLA
Sbjct: 361 LQPGQEHYSCLVDLLCRAGELDKAWKLVNDMKSQHCNVSLWGALLRACLEHGKIELGNLA 420

Query: 433 ARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEITS 489
           A+KALELDPQN GIFVMLSNLYA FGLWNEIEHLREFV KEG+ KDVGCSWIEITS
Sbjct: 421 AQKALELDPQNTGIFVMLSNLYAIFGLWNEIEHLREFVSKEGMCKDVGCSWIEITS 476

[Close]

BLAST of Clc11G04120 vs. TAIR 10
Match: AT5G04780.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 268.1 bits (684), Expect = 1.4e-71
Identity = 141/401 (35.16%), Postives = 249/401 (62.09%), Query Frame = 0


Query: 86  IFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSLVQN 145
           +F  ++ RS +++N +I  ++R+     AL  F  M + G     + + S LSAC +  +
Sbjct: 118 VFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCD 177

Query: 146 AVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCANALLAG 205
           A+  K++H    KT    +++VG+A++D+YAK  +I DAV+VF+ +  K++V  ++++AG
Sbjct: 178 ALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAG 237

Query: 206 YGEARMWVEGLELLRKMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVYDIT 265
           Y + + + E L L R+ Q + L+ +QFTLS+ + AC+ L+A+  GKQ+HA + ++ +   
Sbjct: 238 YVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFG-- 297

Query: 266 SDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYGRNGCYKRV 325
           S+V + S+ ++MY K G + +++ +F+       E  ++++ +W +++S + ++   K V
Sbjct: 298 SNVFVASSAVDMYAKCGSLRESYIIFS-------EVQEKNLELWNTIISGFAKHARPKEV 357

Query: 326 IELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSCLVD 385
           + L+ +M  +G  P+ V F +++S CGHTG V+ G ++F  M+T +GL P   HYSC+VD
Sbjct: 358 MILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVD 417

Query: 386 LLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKALELDPQNAG 445
           +L RAG L +A++L+  I  +D   S+WG+LL +C    N++L  +AA K  EL+P+NAG
Sbjct: 418 ILGRAGLLSEAYELIKSI-PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAG 477

Query: 446 IFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEI 487
             V+LSN+YA    W EI   R+ +R   + K  G SWI+I
Sbjct: 478 NHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDI 508

[Close]

BLAST of Clc11G04120 vs. TAIR 10
Match: AT4G18750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 264.2 bits (674), Expect = 2.0e-70
Identity = 134/409 (32.76%), Postives = 237/409 (57.95%), Query Frame = 0


Query: 79  DAQSLNSIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLS 138
           D  S  ++F+ +  RS +++  +I+ ++R G    A+  F  M   G+  D Y + + L+
Sbjct: 346 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405

Query: 139 ACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVC 198
            C+  +    GK++H ++ +      +FV +A++DMYAK   + +A  VF E+ +K+ + 
Sbjct: 406 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 465

Query: 199 ANALLAGYGEARMWVEGLELLR-KMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYL 258
            N ++ GY +     E L L    ++      D+ T++  L ACA LSA   G+++H Y+
Sbjct: 466 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 525

Query: 259 LRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYG 318
           +R  Y   SD H+ ++L++MY K G +  A  +F+       +   +D++ WT M++ YG
Sbjct: 526 MRNGY--FSDRHVANSLVDMYAKCGALLLAHMLFD-------DIASKDLVSWTVMIAGYG 585

Query: 319 RNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQ 378
            +G  K  I L+NQM   G + D ++FV+++ AC H+G VD G ++F+ M+ +  +EP  
Sbjct: 586 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 645

Query: 379 EHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKAL 438
           EHY+C+VD+L R G+L KA++ + ++     + ++WGALL  C    ++KL    A K  
Sbjct: 646 EHYACIVDMLARTGDLIKAYRFIENMPI-PPDATIWGALLCGCRIHHDVKLAEKVAEKVF 705

Query: 439 ELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDVGCSWIEI 487
           EL+P+N G +V+++N+YA    W +++ LR+ + + GL K+ GCSWIEI
Sbjct: 706 ELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEI 744

[Close]

BLAST of Clc11G04120 vs. TAIR 10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 263.1 bits (671), Expect = 4.5e-70
Identity = 163/496 (32.86%), Postives = 267/496 (53.83%), Query Frame = 0


Query: 27  SFASVFRHSSQIKNLKAIKKLHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQSLNSI 86
           SFASV    S + ++    ++H+ + ++ F      + S L+  YS+     DAQ    +
Sbjct: 154 SFASVLSACSGLNDMNKGVQVHSLIAKSPF-LSDVYIGSALVDMYSKCGNVNDAQ---RV 213

Query: 87  FKCIIPRSSLTFNIIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSLVQNA 146
           F  +  R+ +++N +I+ F ++G    AL  F  M  + V  D   L S +SAC+ +   
Sbjct: 214 FDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAI 273

Query: 147 VYGKQIHAFVGKTGWLCS-VFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCA------ 206
             G+++H  V K   L + + + +A VDMYAK S I +A  +FD +P++N +        
Sbjct: 274 KVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISG 333

Query: 207 -------------------------NALLAGYGEARMWVEGLELLRKMQALDLKYDQFTL 266
                                    NAL+AGY +     E L L   ++   +    ++ 
Sbjct: 334 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSF 393

Query: 267 SASLRACAGLSAIALGKQVHAYLLRTVYDITS----DVHLQSTLIEMYGKSGMVDKAWNV 326
           +  L+ACA L+ + LG Q H ++L+  +   S    D+ + ++LI+MY K G V++ + V
Sbjct: 394 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLV 453

Query: 327 FNFAGLREKEDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISA 386
           F       ++  +RD + W +M+  + +NG     +EL+ +ML  G KPD +  + V+SA
Sbjct: 454 F-------RKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSA 513

Query: 387 CGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNV 446
           CGH G V+ G  YF SM  DFG+ P ++HY+C+VDLL RAG LE+A  ++ ++     +V
Sbjct: 514 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSV 573

Query: 447 SLWGALLRACLEQGNIKLGNLAARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFV 487
            +WG+LL AC    NI LG   A K LE++P N+G +V+LSN+YA  G W ++ ++R+ +
Sbjct: 574 -IWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSM 633

[Close]

BLAST of Clc11G04120 vs. TAIR 10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 1.6e-67
Identity = 144/427 (33.72%), Postives = 239/427 (55.97%), Query Frame = 0


Query: 63  LHSKLILSYSQIIPNFDAQSLN---SIFKCIIPRSSLTFNIIISDFSRHGFPDFALMAFS 122
           L + L+  YS+       +SLN    +F     R+S+T++ +++ +S++G    A+  FS
Sbjct: 258 LSNALVTMYSK------CESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFS 317

Query: 123 FMHSNGVPIDTYALCSSLSACSLVQNAVYGKQIHAFVGKTGWLCSVFVGSAIVDMYAKNS 182
            M S G+    Y +   L+ACS +     GKQ+H+F+ K G+   +F  +A+VDMYAK  
Sbjct: 318 RMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAG 377

Query: 183 LIDDAVEVFDEIPMKNTVCANALLAGYGEARMWVEGLELLRKMQALDLKYDQFTLSASLR 242
            + DA + FD +  ++     +L++GY +     E L L R+M+   +  +  T+++ L+
Sbjct: 378 CLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLK 437

Query: 243 ACAGLSAIALGKQVHAYLLRTVYDITSDVHLQSTLIEMYGKSGMVDKAWNVFNFAGLREK 302
           AC+ L+ + LGKQVH + ++  + +  +V + S L  MY K G ++    VF       +
Sbjct: 438 ACSSLATLELGKQVHGHTIKHGFGL--EVPIGSALSTMYSKCGSLEDGNLVF-------R 497

Query: 303 EDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVDL 362
               +D++ W +M+S    NG     +EL+ +ML EG +PD V FV +ISAC H G V+ 
Sbjct: 498 RTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVER 557

Query: 363 GVKYFDSMQTDFGLEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDHNVSLWGALLRA 422
           G  YF+ M    GL+P  +HY+C+VDLL RAG+L++A + + +  + DH + LW  LL A
Sbjct: 558 GWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFI-ESANIDHGLCLWRILLSA 617

Query: 423 CLEQGNIKLGNLAARKALELDPQNAGIFVMLSNLYAGFGLWNEIEHLREFVRKEGLYKDV 482
           C   G  +LG  A  K + L  + +  +V LS +Y   G   ++E + + +R  G+ K+V
Sbjct: 618 CKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEV 668

Query: 483 GCSWIEI 487
           GCSWIE+
Sbjct: 678 GCSWIEL 668

[Close]

BLAST of Clc11G04120 vs. TAIR 10
Match: AT1G18485.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 253.8 bits (647), Expect = 2.7e-67
Identity = 138/446 (30.94%), Postives = 252/446 (56.50%), Query Frame = 0


Query: 41  LKAIKKLHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAQSLNSIFKCIIPRSSLTFNI 100
           L ++K+LH + L+  F  ++  + +  + SY++      AQ    +F  I  ++  ++N 
Sbjct: 411 LPSLKELHCYSLKQEF-VYNELVANAFVASYAKCGSLSYAQ---RVFHGIRSKTVNSWNA 470

Query: 101 IISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLSACSLVQNAVYGKQIHAFVGKTG 160
           +I   ++   P  +L A   M  +G+  D++ +CS LSACS +++   GK++H F+ +  
Sbjct: 471 LIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 530

Query: 161 WLCSVFVGSAIVDMYAKNSLIDDAVEVFDEIPMKNTVCANALLAGYGEARMWVEGLELLR 220
               +FV  +++ +Y     +     +FD +  K+ V  N ++ GY +       L + R
Sbjct: 531 LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFR 590

Query: 221 KMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVYDITSDVHLQSTLIEMYGK 280
           +M    ++    ++     AC+ L ++ LG++ HAY L+ +  +  D  +  +LI+MY K
Sbjct: 591 QMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL--LEDDAFIACSLIDMYAK 650

Query: 281 SGMVDKAWNVFNFAGLREKEDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGNKPD 340
           +G + ++  VFN  GL+EK         W +M+  YG +G  K  I+L+ +M   G+ PD
Sbjct: 651 NGSITQSSKVFN--GLKEKSTAS-----WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPD 710

Query: 341 RVAFVTVISACGHTGEVDLGVKYFDSMQTDFGLEPGQEHYSCLVDLLCRAGELEKAWKLV 400
            + F+ V++AC H+G +  G++Y D M++ FGL+P  +HY+C++D+L RAG+L+KA ++V
Sbjct: 711 DLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVV 770

Query: 401 NDIKSWDHNVSLWGALLRACLEQGNIKLGNLAARKALELDPQNAGIFVMLSNLYAGFGLW 460
            +  S + +V +W +LL +C    N+++G   A K  EL+P+    +V+LSNLYAG G W
Sbjct: 771 AEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKW 830

Query: 461 NEIEHLREFVRKEGLYKDVGCSWIEI 487
            ++  +R+ + +  L KD GCSWIE+
Sbjct: 831 EDVRKVRQRMNEMSLRKDAGCSWIEL 843

The following BLAST results are available for this feature:

BLAST of Clc11G04120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901137.1	1.9e-264	94.33	pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benin...	[more]
XP_008457622.1	1.2e-255	92.92	PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis m...	[more]
XP_023512242.1	9.6e-248	87.65	pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp...	[more]
KAG6571067.1	1.1e-246	88.45	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022944055.1	6.9e-246	88.24	pentatricopeptide repeat-containing protein At1g50270-like [Cucurbita moschata] ...	[more]

BLAST of Clc11G04120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ19	2.0e-70	35.16	Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidop...	[more]
Q9SN39	2.9e-69	32.76	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]
Q9SIT7	6.4e-69	32.86	Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX...	[more]
P93005	2.3e-66	33.72	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX...	[more]
Q5G1T1	3.9e-66	31.17	Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop...	[more]

BLAST of Clc11G04120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C6K8	6.1e-256	92.92	pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=36...	[more]
A0A5D3BKX2	6.1e-256	92.92	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0LLD6	2.5e-249	90.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258600 PE=4 SV=1	[more]
A0A6J1FYF9	3.3e-246	88.24	pentatricopeptide repeat-containing protein At1g50270-like OS=Cucurbita moschata...	[more]
A0A6J1CYG8	4.1e-236	84.66	pentatricopeptide repeat-containing protein At4g21300-like OS=Momordica charanti...	[more]

BLAST of Clc11G04120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04780.1	1.4e-71	35.16	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18750.1	2.0e-70	32.76	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G13600.1	4.5e-70	32.86	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G33680.1	1.6e-67	33.72	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G18485.1	2.7e-67	30.94	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 372..402 e-value: 2.3E-6 score: 27.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 307..340 e-value: 4.8E-7 score: 27.6 coord: 343..375 e-value: 1.9E-4 score: 19.4 coord: 198..230 e-value: 1.7E-4 score: 19.5 coord: 380..409 e-value: 2.0E-5 score: 22.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 198..224 e-value: 0.0071 score: 16.5 coord: 170..193 e-value: 0.043 score: 14.1 coord: 97..126 e-value: 0.006 score: 16.7 coord: 272..292 e-value: 0.029 score: 14.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 305..351 e-value: 1.7E-7 score: 31.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 376..410 score: 8.604678
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 94..128 score: 8.780059
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 305..339 score: 10.98328
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 93..270 e-value: 3.9E-24 score: 87.6 coord: 271..485 e-value: 2.5E-37 score: 130.9
None	No IPR available	PANTHER	PTHR47928:SF115	OS02G0126500 PROTEIN	coord: 41..484
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 41..484

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G04120.2	Clc11G04120.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009451	RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding