Clc11G02650 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G02650
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	multiprotein-bridging factor 1c
Location	ClcChr11: 2550308 .. 2551228 (-)
RNA-Seq Expression	Clc11G02650
Synteny	Clc11G02650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGGCAAGAACTTTCCAGAGAACCACTCCTCTTTCTCTCTATATATAATCCATCTTCCCATATTCTGAACCCAATCCAATCGGCGTTCTAATCGAATCATCCAATTCCGTTCTCTTCGCTAATTTATTTTTCAAAATTCTTCAACAACAATGCCGAGCCGATACCCCGGAGCCCTAGCTCAAGATTGGGAGCCAGTGGTTCTCCACAAGGCGAAGCCAAAGGCTCAGACCCTTCGCGATCCGAAGGCAGTGAACCAAGCGATCCGGTCCGGCGCAGCGGTGCAGACAGTGAAGAAATTCGACGCCGGTTCGAACAAGAAAGCCGCAGCGGCGCCAGTGAACGCGAGGAAGCTGGACGAAGGGACTGAACCGGCGGCGCTGGACCGCGTGGCGGCGGAGGTGAGACTGACGATTCAGAAGGCTCGAGTGGAGAAGAAGATGAGCCAAGCGGAATTGGCGAAACAGATAAACGAGCGGACTCAGGTTGTGCAAGAATACGAAAATGGGAAGGCGGTGCCGAATCAGGCGGTTTTGTCGAAGATGGAGAAGGTTTTGGGCGTGAAGCTTCGAGGCAGATCGGGGAAGTGAGATTCGAATTCAAAACCGTTTTCCGACCTCGCGTTTTGATGTAATTAGTGTTTGGAAATGAGGACTGTTGATTTGTAAAAGGTGTAAGGTATCTTCGTGGTTTAAGAAATGAGATTTGACTTCGAAACCGCTGTCTGAACTAGCGTTTTGATGTAATTTGATTTCTTTGTGATGTGAATATTGTGGGCATTTGGGAATATAGGAAAGAGAGTAAGAAATGGGTGCCGTTGATTTGTAGGAAATGTGTATCTTCGTGGTTTAAGAAATGGTTGAAAAAGCATGATCGGTATTAAATGTGAATTATGTGATTTATTTATTTGAGTGTTTTACACG

mRNA sequence

GCGGGCAAGAACTTTCCAGAGAACCACTCCTCTTTCTCTCTATATATAATCCATCTTCCCATATTCTGAACCCAATCCAATCGGCGTTCTAATCGAATCATCCAATTCCGTTCTCTTCGCTAATTTATTTTTCAAAATTCTTCAACAACAATGCCGAGCCGATACCCCGGAGCCCTAGCTCAAGATTGGGAGCCAGTGGTTCTCCACAAGGCGAAGCCAAAGGCTCAGACCCTTCGCGATCCGAAGGCAGTGAACCAAGCGATCCGGTCCGGCGCAGCGGTGCAGACAGTGAAGAAATTCGACGCCGGTTCGAACAAGAAAGCCGCAGCGGCGCCAGTGAACGCGAGGAAGCTGGACGAAGGGACTGAACCGGCGGCGCTGGACCGCGTGGCGGCGGAGGTGAGACTGACGATTCAGAAGGCTCGAGTGGAGAAGAAGATGAGCCAAGCGGAATTGGCGAAACAGATAAACGAGCGGACTCAGGTTGTGCAAGAATACGAAAATGGGAAGGCGGTGCCGAATCAGGCGGTTTTGTCGAAGATGGAGAAGGTTTTGGGCGTGAAGCTTCGAGGCAGATCGGGGAAGTGAGATTCGAATTCAAAACCGTTTTCCGACCTCGCGTTTTGATGTAATTAGTGTTTGGAAATGAGGACTGTTGATTTGTAAAAGGTGTAAGGTATCTTCGTGGTTTAAGAAATGAGATTTGACTTCGAAACCGCTGTCTGAACTAGCGTTTTGATGTAATTTGATTTCTTTGTGATGTGAATATTGTGGGCATTTGGGAATATAGGAAAGAGAGTAAGAAATGGGTGCCGTTGATTTGTAGGAAATGTGTATCTTCGTGGTTTAAGAAATGGTTGAAAAAGCATGATCGGTATTAAATGTGAATTATGTGATTTATTTATTTGAGTGTTTTACACG

Coding sequence (CDS)

ATGCCGAGCCGATACCCCGGAGCCCTAGCTCAAGATTGGGAGCCAGTGGTTCTCCACAAGGCGAAGCCAAAGGCTCAGACCCTTCGCGATCCGAAGGCAGTGAACCAAGCGATCCGGTCCGGCGCAGCGGTGCAGACAGTGAAGAAATTCGACGCCGGTTCGAACAAGAAAGCCGCAGCGGCGCCAGTGAACGCGAGGAAGCTGGACGAAGGGACTGAACCGGCGGCGCTGGACCGCGTGGCGGCGGAGGTGAGACTGACGATTCAGAAGGCTCGAGTGGAGAAGAAGATGAGCCAAGCGGAATTGGCGAAACAGATAAACGAGCGGACTCAGGTTGTGCAAGAATACGAAAATGGGAAGGCGGTGCCGAATCAGGCGGTTTTGTCGAAGATGGAGAAGGTTTTGGGCGTGAAGCTTCGAGGCAGATCGGGGAAGTGA

Protein sequence

MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAAAPVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLSKMEKVLGVKLRGRSGK

Homology

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BLAST of Clc11G02650 vs. NCBI nr
Match: XP_038890461.1 (multiprotein-bridging factor 1c [Benincasa hispida])

HSP 1 Score: 257.3 bits (656), Expect = 7.9e-65
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGA+AQDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA
Sbjct: 1   MPSRFPGAIAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKLDE TEPAALDRVAAEVRL IQKAR+EKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLDELTEPAALDRVAAEVRLAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRGRSGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

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BLAST of Clc11G02650 vs. NCBI nr
Match: TYK10712.1 (multiprotein-bridging factor 1c [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 7.4e-63
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK AA
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 60

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRGRSGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

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BLAST of Clc11G02650 vs. NCBI nr
Match: XP_008458302.1 (PREDICTED: multiprotein-bridging factor 1c [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 7.4e-63
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK AA
Sbjct: 68  MPSRFPGALSQDWEPVVLHKAKPKAQVLRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 127

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 128 APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 187

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRGRSGK
Sbjct: 188 AVPNQAVLAKMEKVLGVKLRGRSGK 212

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BLAST of Clc11G02650 vs. NCBI nr
Match: KAA0061560.1 (multiprotein-bridging factor 1c [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 7.4e-63
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK AA
Sbjct: 68  MPSRFPGALSQDWEPVVLHKAKPKAQVLRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 127

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 128 APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 187

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRGRSGK
Sbjct: 188 AVPNQAVLAKMEKVLGVKLRGRSGK 212

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BLAST of Clc11G02650 vs. NCBI nr
Match: XP_004139340.1 (multiprotein-bridging factor 1c [Cucumis sativus] >KGN60623.1 hypothetical protein Csa_019517 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 4.8e-62
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK  A
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVTA 60

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKL+EGTEPAALDRVA EVR  IQKAR+EKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVAVEVRQAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRGRSGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

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BLAST of Clc11G02650 vs. ExPASy Swiss-Prot
Match: Q9LV58 (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana OX=3702 GN=MBF1C PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.4e-56
Identity = 120/148 (81.08%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNK--KA 60
           MPSRYPGA+ QDWEPVVLHK+K K+Q LRDPKAVN A+R+G AVQTVKKFDAGSNK  K+
Sbjct: 1   MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKS 60

Query: 61  AAAPV-NARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYE 120
            A PV N +KL+E TEPAA+DRV AEVRL IQKAR+EKKMSQA+LAKQINERTQVVQEYE
Sbjct: 61  TAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYE 120

Query: 121 NGKAVPNQAVLSKMEKVLGVKLRGRSGK 146
           NGKAVPNQAVL+KMEKVLGVKLRG+ GK
Sbjct: 121 NGKAVPNQAVLAKMEKVLGVKLRGKIGK 148

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BLAST of Clc11G02650 vs. ExPASy Swiss-Prot
Match: Q9LXT3 (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana OX=3702 GN=MBF1B PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-33
Identity = 75/137 (54.74%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 7   GALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA-APVNA 66
           G + QDWEPVV+ K  P A   RD K VN A RSGA ++TV+KF+AGSNK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNT 64

Query: 67  RKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGKAVPNQ 126
           +KLD+ TE  + DRV  E++  I +AR EKK++Q++LA  INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLSKMEKVLGVKLRGR 143
            +LSK+E+ LG KLRG+
Sbjct: 125 QILSKLERALGAKLRGK 141

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BLAST of Clc11G02650 vs. ExPASy Swiss-Prot
Match: Q9SJI8 (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana OX=3702 GN=MBF1A PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-30
Identity = 70/137 (51.09%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 7   GALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA-APVNA 66
           G + QDWEPVV+ K    A   RD K VN A RSGA ++TV+KF+AG+NK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNT 64

Query: 67  RKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGKAVPNQ 126
           + LD+ TE    +RV  E++  I +AR +KK++Q++LA+ INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLSKMEKVLGVKLRGR 143
            +LSK+E+ LG KLRG+
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]

BLAST of Clc11G02650 vs. ExPASy Swiss-Prot
Match: Q6GPQ6 (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis OX=8355 GN=edf1 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.8e-19
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 12  DWEPV-VLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAAAPVNARKLDE 71
           DW+ V VL K  P A   +  +A+  A R G  V+T KK+ AG NK+      N  KLD 
Sbjct: 5   DWDTVTVLRKKGPTAAQAKSKQAITAAQRRGEEVETSKKWSAGQNKQHTITR-NTAKLDR 64

Query: 72  GTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLSK 131
            TE    DRV  EV   IQ+ R  K M+Q +LA +INE+ QV+ +YE GKA+PN  V+ K
Sbjct: 65  ETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMGK 124

Query: 132 MEKVLGVKLRGR 143
           +E+V+G+KLRG+
Sbjct: 125 IERVIGLKLRGK 135

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BLAST of Clc11G02650 vs. ExPASy Swiss-Prot
Match: Q6PBY3 (Endothelial differentiation-related factor 1 homolog OS=Danio rerio OX=7955 GN=edf1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 12  DWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAAAPVNARKLDEG 71
           DW+ V + + K  A   +  +AV  A R G AV+T KK+ AG NK+      N  KLD  
Sbjct: 5   DWDTVTVLRKKGSAAQSKSKQAVTAAQRKGEAVETSKKWAAGQNKQHVVTK-NTAKLDRE 64

Query: 72  TEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLSKM 131
           TE  +  RV  EV   IQ+ R  K ++Q +LA +INE+ Q++ EYE GKA+PN  V+ K+
Sbjct: 65  TEELSHQRVPLEVGKVIQQGRQNKGLTQKDLATKINEKPQIIAEYECGKAIPNNQVMGKI 124

Query: 132 EKVLGVKLRGR 143
           E+ +G+KLRG+
Sbjct: 125 ERAIGLKLRGK 134

[Close]

BLAST of Clc11G02650 vs. ExPASy TrEMBL
Match: A0A5D3CHG2 (Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00210 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.6e-63
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK AA
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 60

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRGRSGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Clc11G02650 vs. ExPASy TrEMBL
Match: A0A5A7V2S1 (Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001220 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.6e-63
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK AA
Sbjct: 68  MPSRFPGALSQDWEPVVLHKAKPKAQVLRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 127

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 128 APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 187

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRGRSGK
Sbjct: 188 AVPNQAVLAKMEKVLGVKLRGRSGK 212

[Close]

BLAST of Clc11G02650 vs. ExPASy TrEMBL
Match: A0A1S3C8T1 (multiprotein-bridging factor 1c OS=Cucumis melo OX=3656 GN=LOC103497758 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.6e-63
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK AA
Sbjct: 68  MPSRFPGALSQDWEPVVLHKAKPKAQVLRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 127

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKLDEGTEPAALDRV  EVR  IQKARVEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 128 APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 187

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRGRSGK
Sbjct: 188 AVPNQAVLAKMEKVLGVKLRGRSGK 212

[Close]

BLAST of Clc11G02650 vs. ExPASy TrEMBL
Match: A0A0A0LFV9 (HTH cro/C1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G004720 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.3e-62
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGAL+QDWEPVVLHKAKPKAQ LRDPKAVNQAIRSGA VQTVKKFDAG NKK  A
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVTA 60

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKL+EGTEPAALDRVA EVR  IQKAR+EKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVAVEVRQAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRGRSGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Clc11G02650 vs. ExPASy TrEMBL
Match: A0A6J1HN61 (multiprotein-bridging factor 1c OS=Cucurbita maxima OX=3661 GN=LOC111465714 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.7e-61
Identity = 129/145 (88.97%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60
           MPSR+PGA++QDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGA V TVKKFDAGSNKKA A
Sbjct: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60

Query: 61  APVNARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKL+EGTEPAALDRV  EVR  IQKAR+EKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLSKMEKVLGVKLRGRSGK 146
           AVPNQAVL+KMEKVLGVKLRG+SGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 145

[Close]

BLAST of Clc11G02650 vs. TAIR 10
Match: AT3G24500.1 (multiprotein bridging factor 1C )

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-57
Identity = 120/148 (81.08%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNK--KA 60
           MPSRYPGA+ QDWEPVVLHK+K K+Q LRDPKAVN A+R+G AVQTVKKFDAGSNK  K+
Sbjct: 1   MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKS 60

Query: 61  AAAPV-NARKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYE 120
            A PV N +KL+E TEPAA+DRV AEVRL IQKAR+EKKMSQA+LAKQINERTQVVQEYE
Sbjct: 61  TAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYE 120

Query: 121 NGKAVPNQAVLSKMEKVLGVKLRGRSGK 146
           NGKAVPNQAVL+KMEKVLGVKLRG+ GK
Sbjct: 121 NGKAVPNQAVLAKMEKVLGVKLRGKIGK 148

[Close]

BLAST of Clc11G02650 vs. TAIR 10
Match: AT3G58680.1 (multiprotein bridging factor 1B )

HSP 1 Score: 141.7 bits (356), Expect = 4.5e-34
Identity = 75/137 (54.74%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 7   GALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA-APVNA 66
           G + QDWEPVV+ K  P A   RD K VN A RSGA ++TV+KF+AGSNK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNT 64

Query: 67  RKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGKAVPNQ 126
           +KLD+ TE  + DRV  E++  I +AR EKK++Q++LA  INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLSKMEKVLGVKLRGR 143
            +LSK+E+ LG KLRG+
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]

BLAST of Clc11G02650 vs. TAIR 10
Match: AT2G42680.1 (multiprotein bridging factor 1A )

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-31
Identity = 70/137 (51.09%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 7   GALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA-APVNA 66
           G + QDWEPVV+ K    A   RD K VN A RSGA ++TV+KF+AG+NK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNT 64

Query: 67  RKLDEGTEPAALDRVAAEVRLTIQKARVEKKMSQAELAKQINERTQVVQEYENGKAVPNQ 126
           + LD+ TE    +RV  E++  I +AR +KK++Q++LA+ INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLSKMEKVLGVKLRGR 143
            +LSK+E+ LG KLRG+
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]

BLAST of Clc11G02650 vs. TAIR 10
Match: AT3G24500.2 (multiprotein bridging factor 1C )

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-29
Identity = 68/95 (71.58%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MPSRYPGALAQDWEPVVLHKAKPKAQTLRDPKAVNQAIRSGAAVQTVKKFDAGSNK--KA 60
          MPSRYPGA+ QDWEPVVLHK+K K+Q LRDPKAVN A+R+G AVQTVKKFDAGSNK  K+
Sbjct: 1  MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKS 60

Query: 61 AAAPV-NARKLDEGTEPAALDRVAAEVRLTIQKAR 93
           A PV N +KL+E TEPAA+DRV AEVRL +++ R
Sbjct: 61 TAVPVINTKKLEEETEPAAMDRVKAEVRLCLRRWR 95

The following BLAST results are available for this feature:

BLAST of Clc11G02650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890461.1	7.9e-65	95.17	multiprotein-bridging factor 1c [Benincasa hispida]	[more]
TYK10712.1	7.4e-63	92.41	multiprotein-bridging factor 1c [Cucumis melo var. makuwa]	[more]
XP_008458302.1	7.4e-63	92.41	PREDICTED: multiprotein-bridging factor 1c [Cucumis melo]	[more]
KAA0061560.1	7.4e-63	92.41	multiprotein-bridging factor 1c [Cucumis melo var. makuwa]	[more]
XP_004139340.1	4.8e-62	91.03	multiprotein-bridging factor 1c [Cucumis sativus] >KGN60623.1 hypothetical prote...	[more]

BLAST of Clc11G02650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LV58	1.4e-56	81.08	Multiprotein-bridging factor 1c OS=Arabidopsis thaliana OX=3702 GN=MBF1C PE=1 SV...	[more]
Q9LXT3	6.4e-33	54.74	Multiprotein-bridging factor 1b OS=Arabidopsis thaliana OX=3702 GN=MBF1B PE=1 SV...	[more]
Q9SJI8	1.7e-30	51.09	Multiprotein-bridging factor 1a OS=Arabidopsis thaliana OX=3702 GN=MBF1A PE=2 SV...	[more]
Q6GPQ6	6.8e-19	45.45	Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis OX=8355 G...	[more]
Q6PBY3	1.2e-18	42.75	Endothelial differentiation-related factor 1 homolog OS=Danio rerio OX=7955 GN=e...	[more]

BLAST of Clc11G02650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHG2	3.6e-63	92.41	Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V2S1	3.6e-63	92.41	Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3C8T1	3.6e-63	92.41	multiprotein-bridging factor 1c OS=Cucumis melo OX=3656 GN=LOC103497758 PE=4 SV=...	[more]
A0A0A0LFV9	2.3e-62	91.03	HTH cro/C1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G00...	[more]
A0A6J1HN61	5.7e-61	88.97	multiprotein-bridging factor 1c OS=Cucurbita maxima OX=3661 GN=LOC111465714 PE=4...	[more]

BLAST of Clc11G02650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24500.1	1.0e-57	81.08	multiprotein bridging factor 1C	[more]
AT3G58680.1	4.5e-34	54.74	multiprotein bridging factor 1B	[more]
AT2G42680.1	1.2e-31	51.09	multiprotein bridging factor 1A	[more]
AT3G24500.2	1.5e-29	71.58	multiprotein bridging factor 1C	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 88..108
None	No IPR available	PANTHER	PTHR10245:SF71	MULTIPROTEIN-BRIDGING FACTOR 1C	coord: 1..144
None	No IPR available	PANTHER	PTHR10245	ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1	coord: 1..144
IPR001387	Cro/C1-type helix-turn-helix domain	SMART	SM00530	mbf_short4	coord: 87..142 e-value: 3.4E-13 score: 59.8
IPR001387	Cro/C1-type helix-turn-helix domain	PFAM	PF01381	HTH_3	coord: 88..139 e-value: 1.2E-13 score: 50.9
IPR001387	Cro/C1-type helix-turn-helix domain	PROSITE	PS50943	HTH_CROC1	coord: 88..142 score: 13.806538
IPR001387	Cro/C1-type helix-turn-helix domain	CDD	cd00093	HTH_XRE	coord: 88..139 e-value: 2.94995E-11 score: 53.3258
IPR013729	Multiprotein bridging factor 1, N-terminal	PFAM	PF08523	MBF1	coord: 11..80 e-value: 4.4E-21 score: 75.1
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	GENE3D	1.10.260.40		coord: 71..145 e-value: 6.0E-28 score: 98.2
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	SUPERFAMILY	47413	lambda repressor-like DNA-binding domains	coord: 85..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G02650.1	Clc11G02650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009408	response to heat
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity