Clc11G01730 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G01730
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem II PsbX
Location	ClcChr11: 1711622 .. 1711999 (-)
RNA-Seq Expression	Clc11G01730
Synteny	Clc11G01730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCCATTACTAACGCAGCTCAGAAGAGAGCGAGGAACGCTGAAGCCTTTGCCAAGCCATTGCCTTTGAGGCCTTCCAACAAGCCAACAAGTGCTTCGGCTTCATCGAACTCCAGCGTCAAGTTTCAAGTGCGAGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCAACTGCACTGACGGCTTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCCGGGCCTGGAGTTAGTCCTTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTGGGTGCAGTTATCGGCGTCTCCAATTTCGATCCCGTCAAGCGGACTTGA

mRNA sequence

ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCCATTACTAACGCAGCTCAGAAGAGAGCGAGGAACGCTGAAGCCTTTGCCAAGCCATTGCCTTTGAGGCCTTCCAACAAGCCAACAAGTGCTTCGGCTTCATCGAACTCCAGCGTCAAGTTTCAAGTGCGAGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCAACTGCACTGACGGCTTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCCGGGCCTGGAGTTAGTCCTTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTGGGTGCAGTTATCGGCGTCTCCAATTTCGATCCCGTCAAGCGGACTTGA

Coding sequence (CDS)

ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCCATTACTAACGCAGCTCAGAAGAGAGCGAGGAACGCTGAAGCCTTTGCCAAGCCATTGCCTTTGAGGCCTTCCAACAAGCCAACAAGTGCTTCGGCTTCATCGAACTCCAGCGTCAAGTTTCAAGTGCGAGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCAACTGCACTGACGGCTTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCCGGGCCTGGAGTTAGTCCTTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTGGGTGCAGTTATCGGCGTCTCCAATTTCGATCCCGTCAAGCGGACTTGA

Protein sequence

MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFDPVKRT

Homology

[Close]

BLAST of Clc11G01730 vs. NCBI nr
Match: XP_038890010.1 (uncharacterized protein LOC120079733 [Benincasa hispida])

HSP 1 Score: 200.3 bits (508), Expect = 9.9e-48
Identity = 117/125 (93.60%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   +ASSNSS KFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARLAEAFAKPLPLRPSNKP---NASSNSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. NCBI nr
Match: KAA0061475.1 (membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47
Identity = 116/125 (92.80%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. NCBI nr
Match: XP_011648590.1 (uncharacterized protein LOC105434533 [Cucumis sativus] >KGN60517.1 hypothetical protein Csa_019271 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 1.9e-46
Identity = 115/125 (92.00%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. NCBI nr
Match: XP_008459641.1 (PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSA+SM MPITNAAQKR R AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKE
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. NCBI nr
Match: XP_022946746.1 (uncharacterized protein LOC111450721 [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 3.2e-46
Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSAVSMAMPITNA QKRAR+ +AFAK LPLRPSNKPT   ASSNS  KFQVRASLKE
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPT---ASSNSRAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGA+IGVSNFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. ExPASy TrEMBL
Match: A0A5A7V6L0 (Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001140 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47
Identity = 116/125 (92.80%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. ExPASy TrEMBL
Match: A0A0A0LIL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 9.0e-47
Identity = 115/125 (92.00%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. ExPASy TrEMBL
Match: A0A1S3CAS0 (uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSA+SM MPITNAAQKR R AEAFAKPLPLRPSNKP   S SS+SS KFQVRASLKE
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. ExPASy TrEMBL
Match: A0A6J1G4H3 (uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC111450721 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSAVSMAMPITNA QKRAR+ +AFAK LPLRPSNKPT   ASSNS  KFQVRASLKE
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPT---ASSNSRAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGA+IGVSNFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. ExPASy TrEMBL
Match: A0A6J1KCH8 (uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.9e-46
Identity = 113/125 (90.40%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSAVSMAMPITNA QKRAR+ +AFAK LPLRPSNKPT   ASSNS  KFQVRASLKE
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPT---ASSNSRAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGVSNFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Clc11G01730 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-26
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVRASLKE 60
           MASTSA+S+  P+          +  F KPLPL+PS    +  A+   + + QV+A   +
Sbjct: 1   MASTSAMSLVTPLNQT------RSSPFLKPLPLKPSK---ALVATGGRAQRLQVKALKMD 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVSNFD 120
           KA+ G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+GG+V+T I+G V+GVSNFD
Sbjct: 61  KALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFD 116

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 116

The following BLAST results are available for this feature:

BLAST of Clc11G01730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890010.1	9.9e-48	93.60	uncharacterized protein LOC120079733 [Benincasa hispida]	[more]
KAA0061475.1	2.2e-47	92.80	membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family p...	[more]
XP_011648590.1	1.9e-46	92.00	uncharacterized protein LOC105434533 [Cucumis sativus] >KGN60517.1 hypothetical ...	[more]
XP_008459641.1	2.4e-46	91.20	PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo]	[more]
XP_022946746.1	3.2e-46	91.20	uncharacterized protein LOC111450721 [Cucurbita moschata]	[more]

BLAST of Clc11G01730 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G01730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6L0	1.1e-47	92.80	Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LIL7	9.0e-47	92.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1	[more]
A0A1S3CAS0	1.2e-46	91.20	uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=...	[more]
A0A6J1G4H3	1.5e-46	91.20	uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A6J1KCH8	5.9e-46	90.40	uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667...	[more]

BLAST of Clc11G01730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	1.0e-26	55.20	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 88..125 e-value: 5.7E-17 score: 61.5
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 87..125 e-value: 2.4E-11 score: 45.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..125
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G01730.1	Clc11G01730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0019904	protein domain specific binding