Clc10G21920 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTATATATCCACGCACATGATTGTCGTCTGTGGTCCAAAACGGAAAGCCAAACGATCGATCGTCAAGAGGCTGAGCTAATAAATCAACTGCCGGACCGCCGTGCAGAATCGCCGTGGCGGCTGGCAAGTGTTAAATCCTCTCTTTCATTTTTATTTATTTTTCATTTTTTTATTTTTTGGTCTCCCGTCGAATTGTAAAAAGCCTCTCATCACTGGAAATGCCTTCGAAACCCTCTGTATCGTCTGTTTTAATAGACCGAATCAACGGCTCCGATTCAGTCACCGCCTCAATTCATTGCCAGAAGGAGGCTAAAAAATGGTTCCAGGTGCCGGAATCCGTGGCCGTCTACCATACGCATGCGGTGGGGCCCAACCAGACCTGCTCCGCCGTGGTCCAAGAAATCGCCGCCCCCATCTCCACCGTCTGGTCGGTGGTCCGGCGATTCGACAACCCGCAGGCCTACAAGCACTTCGTAAAGAGCTGCCACGTGGTCGTCGGCGATGGCAACGTCGGAACGCTCCGGGAGGTCCACGTCATCTCCGGCCTTCCCGCAGGCTGCAGCACTGAACGCCTCGAGATTCTCGACGACGAACACCACATCCTCAGCTTCAGCATGATCGGCGGCGACCACCGCCTCGCCAACTACAGATCCATCACAACACTTCACCCATCGCCGGCCGACGGCGGAAATAAAACCGTCGTCGTTGAGTCCTACGCCGTCGATACGCCGCCGGGAAATACCAAAGAAGAAACCACCGTGTTCGTGGATACCATTCTGCGTTGCAATCTGCAGTCGTTGGCTCAACTCGCCGAGAATTTGCGTAAACGCAATAATTAAACTCCGCTATAAGTTAACTTCACTAATTGGAACATTCAATATTTTCCTCTGTTCTCTATTTCTTCAAATTGTTGGCTTAATTGTCTAGAAATTTTCGTGAGCTACCCAAAATGCCTTCCGCTCTGTGCATGAATTAATATTTATACTTTTGTCTCTCTTGTGCCCAAATCCCTAAGTGTTAATAATCAATTTGATTTCAATATGATACACCATCTTTATGTATTTCGCACCCTTCGTAATAATAATAATAATAATAATAAAAGTATTATATAAATAGTAAATAGAGGAATAAGTGAGGGTAAATTAGAAGGTTCTAGAAGGAGAGGTAAATTAGAAGGTTCTACAATAGTAATTGTCGTGGCTCTATATATTCAAGGTTGATTTCACATTTTGTACTGGCTCTATATATTCAAGGTTGATTTCACATTTTGTACTGGCTCTATATATTCAAGGTTGATTTCACATTTTGTACT TTTATATATCCACGCACATGATTGTCGTCTGTGGTCCAAAACGGAAAGCCAAACGATCGATCGTCAAGAGGCTGAGCTAATAAATCAACTGCCGGACCGCCGTGCAGAATCGCCGTGGCGGCTGGCAAGTGTTAAATCCTCTCTTTCATTTTTATTTATTTTTCATTTTTTTATTTTTTGGTCTCCCGTCGAATTGTAAAAAGCCTCTCATCACTGGAAATGCCTTCGAAACCCTCTGTATCGTCTGTTTTAATAGACCGAATCAACGGCTCCGATTCAGTCACCGCCTCAATTCATTGCCAGAAGGAGGCTAAAAAATGGTTCCAGGTGCCGGAATCCGTGGCCGTCTACCATACGCATGCGGTGGGGCCCAACCAGACCTGCTCCGCCGTGGTCCAAGAAATCGCCGCCCCCATCTCCACCGTCTGGTCGGTGGTCCGGCGATTCGACAACCCGCAGGCCTACAAGCACTTCGTAAAGAGCTGCCACGTGGTCGTCGGCGATGGCAACGTCGGAACGCTCCGGGAGGTCCACGTCATCTCCGGCCTTCCCGCAGGCTGCAGCACTGAACGCCTCGAGATTCTCGACGACGAACACCACATCCTCAGCTTCAGCATGATCGGCGGCGACCACCGCCTCGCCAACTACAGATCCATCACAACACTTCACCCATCGCCGGCCGACGGCGGAAATAAAACCGTCGTCGTTGAGTCCTACGCCGTCGATACGCCGCCGGGAAATACCAAAGAAGAAACCACCGTGTTCGTGGATACCATTCTGCGTTGCAATCTGCAGTCGTTGGCTCAACTCGCCGAGAATTTGCGTAAACGCAATAATTAAACTCCGCTATAAGTTAACTTCACTAATTGGAACATTCAATATTTTCCTCTGTTCTCTATTTCTTCAAATTGTTGGCTTAATTGTCTAGAAATTTTCGTGAGCTACCCAAAATGCCTTCCGCTCTGTGCATGAATTAATATTTATACTTTTGTCTCTCTTGTGCCCAAATCCCTAAGTGTTAATAATCAATTTGATTTCAATATGATACACCATCTTTATGTATTTCGCACCCTTCGTAATAATAATAATAATAATAATAAAAGTATTATATAAATAGTAAATAGAGGAATAAGTGAGGGTAAATTAGAAGGTTCTAGAAGGAGAGGTAAATTAGAAGGTTCTACAATAGTAATTGTCGTGGCTCTATATATTCAAGGTTGATTTCACATTTTGTACTGGCTCTATATATTCAAGGTTGATTTCACATTTTGTACTGGCTCTATATATTCAAGGTTGATTTCACATTTTGTACT ATGCCTTCGAAACCCTCTGTATCGTCTGTTTTAATAGACCGAATCAACGGCTCCGATTCAGTCACCGCCTCAATTCATTGCCAGAAGGAGGCTAAAAAATGGTTCCAGGTGCCGGAATCCGTGGCCGTCTACCATACGCATGCGGTGGGGCCCAACCAGACCTGCTCCGCCGTGGTCCAAGAAATCGCCGCCCCCATCTCCACCGTCTGGTCGGTGGTCCGGCGATTCGACAACCCGCAGGCCTACAAGCACTTCGTAAAGAGCTGCCACGTGGTCGTCGGCGATGGCAACGTCGGAACGCTCCGGGAGGTCCACGTCATCTCCGGCCTTCCCGCAGGCTGCAGCACTGAACGCCTCGAGATTCTCGACGACGAACACCACATCCTCAGCTTCAGCATGATCGGCGGCGACCACCGCCTCGCCAACTACAGATCCATCACAACACTTCACCCATCGCCGGCCGACGGCGGAAATAAAACCGTCGTCGTTGAGTCCTACGCCGTCGATACGCCGCCGGGAAATACCAAAGAAGAAACCACCGTGTTCGTGGATACCATTCTGCGTTGCAATCTGCAGTCGTTGGCTCAACTCGCCGAGAATTTGCGTAAACGCAATAATTAA MPSKPSVSSVLIDRINGSDSVTASIHCQKEAKKWFQVPESVAVYHTHAVGPNQTCSAVVQEIAAPISTVWSVVRRFDNPQAYKHFVKSCHVVVGDGNVGTLREVHVISGLPAGCSTERLEILDDEHHILSFSMIGGDHRLANYRSITTLHPSPADGGNKTVVVESYAVDTPPGNTKEETTVFVDTILRCNLQSLAQLAENLRKRNN Homology
BLAST of Clc10G21920 vs. NCBI nr
Match: XP_038903365.1 (abscisic acid receptor PYL4-like [Benincasa hispida]) HSP 1 Score: 406.4 bits (1043), Expect = 1.5e-109 Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0
BLAST of Clc10G21920 vs. NCBI nr
Match: XP_023526459.1 (abscisic acid receptor PYL4-like [Cucurbita pepo subsp. pepo] >AXF54224.1 ABA2 [Cucurbita pepo]) HSP 1 Score: 392.1 bits (1006), Expect = 2.9e-105 Identity = 194/206 (94.17%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of Clc10G21920 vs. NCBI nr
Match: XP_022971609.1 (abscisic acid receptor PYL4-like [Cucurbita maxima] >XP_023540260.1 abscisic acid receptor PYL4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 391.7 bits (1005), Expect = 3.8e-105 Identity = 188/206 (91.26%), Postives = 199/206 (96.60%), Query Frame = 0
BLAST of Clc10G21920 vs. NCBI nr
Match: XP_022982714.1 (abscisic acid receptor PYL4-like [Cucurbita maxima]) HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104 Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of Clc10G21920 vs. NCBI nr
Match: KAG6596329.1 (Abscisic acid receptor PYL4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104 Identity = 187/206 (90.78%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy Swiss-Prot
Match: O80920 (Abscisic acid receptor PYL4 OS=Arabidopsis thaliana OX=3702 GN=PYL4 PE=1 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 1.5e-67 Identity = 123/162 (75.93%), Postives = 142/162 (87.65%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy Swiss-Prot
Match: Q8S8E3 (Abscisic acid receptor PYL6 OS=Arabidopsis thaliana OX=3702 GN=PYL6 PE=1 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 2.3e-60 Identity = 115/187 (61.50%), Postives = 143/187 (76.47%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy Swiss-Prot
Match: Q9FLB1 (Abscisic acid receptor PYL5 OS=Arabidopsis thaliana OX=3702 GN=PYL5 PE=1 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 1.8e-57 Identity = 109/161 (67.70%), Postives = 133/161 (82.61%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy Swiss-Prot
Match: Q84MC7 (Abscisic acid receptor PYL9 OS=Arabidopsis thaliana OX=3702 GN=PYL9 PE=1 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 1.1e-46 Identity = 92/165 (55.76%), Postives = 117/165 (70.91%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy Swiss-Prot
Match: Q6I5C3 (Abscisic acid receptor PYL5 OS=Oryza sativa subsp. japonica OX=39947 GN=PYL5 PE=1 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 4.2e-46 Identity = 88/157 (56.05%), Postives = 114/157 (72.61%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy TrEMBL
Match: A0A345BTG7 (ABA2 OS=Cucurbita pepo OX=3663 PE=2 SV=1) HSP 1 Score: 392.1 bits (1006), Expect = 1.4e-105 Identity = 194/206 (94.17%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy TrEMBL
Match: A0A6J1I924 (abscisic acid receptor PYL4-like OS=Cucurbita maxima OX=3661 GN=LOC111470284 PE=3 SV=1) HSP 1 Score: 391.7 bits (1005), Expect = 1.8e-105 Identity = 188/206 (91.26%), Postives = 199/206 (96.60%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy TrEMBL
Match: A0A6J1J5C5 (abscisic acid receptor PYL4-like OS=Cucurbita maxima OX=3661 GN=LOC111481501 PE=3 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 5.4e-105 Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy TrEMBL
Match: A0A6J1F7C4 (abscisic acid receptor PYL4-like OS=Cucurbita moschata OX=3662 GN=LOC111441520 PE=3 SV=1) HSP 1 Score: 389.4 bits (999), Expect = 9.2e-105 Identity = 192/206 (93.20%), Postives = 197/206 (95.63%), Query Frame = 0
BLAST of Clc10G21920 vs. ExPASy TrEMBL
Match: A0A6J1FR31 (abscisic acid receptor PYL4-like OS=Cucurbita moschata OX=3662 GN=LOC111446472 PE=3 SV=1) HSP 1 Score: 387.5 bits (994), Expect = 3.5e-104 Identity = 186/206 (90.29%), Postives = 197/206 (95.63%), Query Frame = 0
BLAST of Clc10G21920 vs. TAIR 10
Match: AT2G38310.1 (PYR1-like 4 ) HSP 1 Score: 257.3 bits (656), Expect = 1.0e-68 Identity = 123/162 (75.93%), Postives = 142/162 (87.65%), Query Frame = 0
BLAST of Clc10G21920 vs. TAIR 10
Match: AT2G40330.1 (PYR1-like 6 ) HSP 1 Score: 233.4 bits (594), Expect = 1.6e-61 Identity = 115/187 (61.50%), Postives = 143/187 (76.47%), Query Frame = 0
BLAST of Clc10G21920 vs. TAIR 10
Match: AT5G05440.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein ) HSP 1 Score: 223.8 bits (569), Expect = 1.3e-58 Identity = 109/161 (67.70%), Postives = 133/161 (82.61%), Query Frame = 0
BLAST of Clc10G21920 vs. TAIR 10
Match: AT1G01360.1 (regulatory component of ABA receptor 1 ) HSP 1 Score: 188.0 bits (476), Expect = 7.8e-48 Identity = 92/165 (55.76%), Postives = 117/165 (70.91%), Query Frame = 0
BLAST of Clc10G21920 vs. TAIR 10
Match: AT5G53160.2 (regulatory components of ABA receptor 3 ) HSP 1 Score: 181.0 bits (458), Expect = 9.5e-46 Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|