Clc10G18890 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G18890
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr10: 32725377 .. 32727402 (+)
RNA-Seq ExpressionClc10G18890
SyntenyClc10G18890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAAGAAACCCTCCCACGCCTTTTTACTCTCAAGAAAGAATTATCTGCTTTTTCCCTTCTCTTTCGAGAAGACCCACCGGTGGTATACTTTCCAAAGGTGTGATTGCTACTTTGAAGATTGGATCTACAAATTTATTTAATTTATCTTCCTATGAATCTGATGGTGTGTTTTAAAGTATGTTTATATTTCCTTGTTCTGTAAAATTTACAGTAACAAATTTGGACGAAACGATTAAACGCTTCTGCAAAAAGGATTCAAAACCTTTCAATATAGTAGTTTATCAGGACCTATCACAAATAGACAATGAAATTTTGCTATATTTATAAATATTGTAGTTAATTTTTCTATATTTAAAAACAACTATTTTTTTACTTTTCATTTTCCACTTAAACCATTTTAAATTTATTTTTAATTAAATTCAAGTGAACCAGTTCTAATATTGTAAGCTTTAGTTTATTTTTTTTGTTTTTATCTTCAATTTCAATTTTCCCCCCGTAAGTTTAAGTTAATTTTTTAATTTAAATTTAAAGGAATTCTAATAAGGGGATAGTTTTTTGTTTTCAAATTTTTTATTTAAAAAAAACATGGAAAAAAATGAAGTTTAAAATTTAAAAGTGGAGTTGGGTTTGAAGAGTGTATTAGAAAAAGGTAAATGTAAAGATCCTTCATTAAGGATAAAATAGTATTTTTACTATGTGGACCCTCAATTTCAAAGGTAAAAAAGTAATAAAAAATGTTAGAATTTTTTTTTTCTTTTTTAAAGAATTGAATTTTGTCAACTCCAAAACTTATTAGTAAGAAATAACAATTTCCTTTTTACTTTTAAGGAAAAATTGCTATTTCTAATTTAAAAAACTTAATTTTCAGATTTTTAGTTGAAGGCTCACACGGCAAAAAGTCTATTTTGTCCCTTATTTGCTAAAAAAGAAGTTAGAATTTTTTTTAAAAAAAATGGGTTAGATTTGTACACTCAAAACTTTTTAAAGCCATTTGATTTTTTTTTCCTTTTTTTTTTACGTTCAATAAAACAGATTTAAATTATTTCAAAGCTATAACAATCTCAAAATTTCATCTGGAAGGAGGAAAAAGAACTAAAAATGAATTTCCCCACGTCTAACTAAAAATGAAAATTTGATATTTATTTTTAAAAGAAAACCCAAAATCAATAGATCTGGGCGGGAAAGGTACAAAAATTGGCGGCTAAGAGGCAAAAAAACAGCCAATTTTCTCCCGTTCCCACTCTCTCACACGTCTTCCTTCCCGCTTTCTCCCATCTTTGGCTCTTCACTGCTTTCTCCTCGATCCGATCTCCATCCTTGATTCGATCTCTCTCTGCGCTTTCACTCACATCGTACATTCGCAACCAAGGTACGTTTCTTCAGCCGAAAGAGTGATCTCTAACGATGTTTTAAGCGCTAGTTGAAATTGGTCAGATATCTGTTTATCCAATTCAGTTTAATTTGCGCAAGATTTGTTCACTACTATATAGCTCGACTACTTTTATCTTGTTTATTGTCGATGATGGGCAACTTTGAGCTCAATCTGCTTCTCTGTCTTCAGATCGGTCTTCCTCTGCGGTCCAATTTTCATCTGCACGGCCACTTGGTACGTTTCCTGCTCTGAAATAAGTGGTTTTATGAAGATGTTTCGAGTTCTAGTTGAAATTGGTCGGAGATCCGTTTATCTGATGAGTGTATTCTGCTTCGTCAAATCCAATTCAATTTCTCCGATTTATGTTGCTAGACATTTGATGCCTGTGCCACTAAAATAAGATCGATTAGGCCTAATAGTGATAGCTTAAGATTTTAGAATCGATTGTTAGTAAGAAGTTGCGCAAGAGCAGTGCATTTACTATCTAACTTGGCTACTTTTATTTTGTTTAATAGTTGATGAATGGTTAACCATCTTAGCTCATTCTGCTTTCTCTTCAGTTCGATCTCCCGTTGCGCTTCAATTTCCATCTACGCTTTCGCTCGGATTATACAATTGGGATCAAGGTACGCGTCTTCATCCAATATAG

mRNA sequence

ATGCTGAAAGAAACCCTCCCACGCCTTTTTACTCTCAAGAAAGAATTATCTGCTTTTTCCCTTCTCTTTCGAGAAGACCCACCGGTGGTATACTTTCCAAAGATCTGGGCGGGAAAGGTACAAAAATTGGCGGCTAAGAGGCAAAAAAACAGCCAATTTTCTCCCGTTCCCACTCTCTCACACGTCTTCCTTCCCGCTTTCTCCCATCTTTGGCTCTTCACTGCTTTCTCCTCGATCCGATCTCCATCCTTGATTCGATCTCTCTCTGCGCTTTCACTCACATCGTACATTCGCAACCAAGATCGGTCTTCCTCTGCGGTCCAATTTTCATCTGCACGGCCACTTGTTCGATCTCCCGTTGCGCTTCAATTTCCATCTACGCTTTCGCTCGGATTATACAATTGGGATCAAGGTACGCGTCTTCATCCAATATAG

Coding sequence (CDS)

ATGCTGAAAGAAACCCTCCCACGCCTTTTTACTCTCAAGAAAGAATTATCTGCTTTTTCCCTTCTCTTTCGAGAAGACCCACCGGTGGTATACTTTCCAAAGATCTGGGCGGGAAAGGTACAAAAATTGGCGGCTAAGAGGCAAAAAAACAGCCAATTTTCTCCCGTTCCCACTCTCTCACACGTCTTCCTTCCCGCTTTCTCCCATCTTTGGCTCTTCACTGCTTTCTCCTCGATCCGATCTCCATCCTTGATTCGATCTCTCTCTGCGCTTTCACTCACATCGTACATTCGCAACCAAGATCGGTCTTCCTCTGCGGTCCAATTTTCATCTGCACGGCCACTTGTTCGATCTCCCGTTGCGCTTCAATTTCCATCTACGCTTTCGCTCGGATTATACAATTGGGATCAAGGTACGCGTCTTCATCCAATATAG

Protein sequence

MLKETLPRLFTLKKELSAFSLLFREDPPVVYFPKIWAGKVQKLAAKRQKNSQFSPVPTLSHVFLPAFSHLWLFTAFSSIRSPSLIRSLSALSLTSYIRNQDRSSSAVQFSSARPLVRSPVALQFPSTLSLGLYNWDQGTRLHPI
Homology
[Close]
BLAST of Clc10G18890 vs. NCBI nr
Match: KAG7017421.1 (hypothetical protein SDJN02_19286, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-08
Identity = 45/87 (51.72%), Postives = 51/87 (58.62%), Query Frame = 0 

Query: 66  AFSHLWLFTAFSSIRSPSLIRSLSALSLTSYIRNQDRSSSAVQ-FSSARPL-------VR 125
           AFSHLWL T   + +S  L  S+S       I  Q RS       + ARPL       VR
Sbjct: 1   AFSHLWLLTL--TPQSDLLRDSISICDFNRTIHPQPRSVFLCDPITFARPLGSYFRSQVR 60

Query: 126 SPVALQFPSTLSLGLYNWDQGTRLHPI 145
           SPVALQFPSTLS G YNW+QGTRLHP+
Sbjct: 61  SPVALQFPSTLSRGSYNWNQGTRLHPM 85

[Close]
BLAST of Clc10G18890 vs. NCBI nr
Match: KAE8651074.1 (hypothetical protein Csa_001472 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-04
Identity = 37/68 (54.41%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 77  SSIRSPSLIRSLSALSLTSYIRNQDRSSSAVQFSSARPLVRSPVALQFPSTLSLGLYNW- 136
           SS+RSPS IRSL A SL SY RNQDR SS V+F  AR L  S   L+F  TL  G + W 
Sbjct: 8   SSVRSPSSIRSLFAHSLASYTRNQDRYSSGVRFPPARAL-GSYCGLKFDLTLRFGFHLWL 67

Query: 137 -DQGTRLH 143
               TR H
Sbjct: 68  HSNDTRSH 74

[Close]
BLAST of Clc10G18890 vs. ExPASy TrEMBL
Match: A0A0A0LGH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G748850 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.4e-04
Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 0 

Query: 77  SSIRSPSLIRSLSALSLTSYIRNQDRSSSAVQFSSARPLVRSPVALQFPSTLSLGLYNW 136
           SS+RSPS IRSL A SL SY RNQDR SS V+F  AR L  S   L+F  TL  G + W
Sbjct: 8   SSVRSPSSIRSLFAHSLASYTRNQDRYSSGVRFPPARAL-GSYCGLKFDLTLRFGFHLW 65

The following BLAST results are available for this feature:
BLAST of Clc10G18890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017421.18.8e-0851.72hypothetical protein SDJN02_19286, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8651074.13.5e-0454.41hypothetical protein Csa_001472 [Cucumis sativus][more]
BLAST of Clc10G18890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc10G18890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGH66.4e-0457.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G748850 PE=4 SV=1[more]
BLAST of Clc10G18890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G18890.1Clc10G18890.1mRNA