Clc10G18875 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAACATCCGGATCACGCGCAAGAGCCACAAAACATATTTGGACGGATAAGGAGGACCGAATCCTCGTGGAGTGTTTGGTCCAATGCGTTCAGTCCGGGCACTGGCGAGTTGATAACGAGACTTTCCGACATGGATTCCTAGCGAACATACTGCGGATGATGCAGCAGAGGATTCCAGGGTGTTCCATACAGGTAAGCCCACATTTGGAGTTAAGGGTCAGGACGTTGAAGAGACAGTACAGCGCGATTGCTAAAATGTTGGGCACAGGATGTAGTGGGATGCGGAGCGCAAATGTATTGACTATCAGGCAGAGATATTTGACGCGTGGGTCAAGGTAATTTTCTTATTTCTTTTATTTATGCCTTTATGTTTTAATATGTCTTAGCCACAACACATTTCACTTTTAATAGAGTCATCCGAGTGCAAAAGAACTGCAACATAAGTCATTTTCGTTCTATGACGACTTGGCCATTGTATTCGGCAAAGATAGAGCCACGGGAAGTCGTGCAACCACCACTGCAGAGGTCGAATCTGAACCTGTTATGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTGATCTACCTTATGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCTGGCGGTAGAAGATCTACAAGTAGCATGCCATCAAAAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGTGGTTCGGGAAGGATTCCAACTTCTGACGAAGTCCATTGACGGCATTGCACAGTGACCAATCGTGAACGAAAACCTGGCAAGGCGTCGTCGCCGAGAACTTTACGCCGAGTTGCAATCAATTCCTAGTCTATCGGTGCAAGATGGTTTGACTGTTGCACACTCATTGCTTGCAGATCCGATGTTGTTAAGCCACTTCATGGACTTCCCACCACAGTGGAAGTACGACTATTGCATGCAAGTTCTTGGGCAACAACGGGATCCAGTCCCATGA ATGGAAACATCCGGATCACGCGCAAGAGCCACAAAACATATTTGGACGGATAAGGAGGACCGAATCCTCGTGGAGTGTTTGGTCCAATGCGTTCAGTCCGGGCACTGGCGAGTTGATAACGAGACTTTCCGACATGGATTCCTAGCGAACATACTGCGGATGATGCAGCAGAGGATTCCAGGGTGTTCCATACAGTGGGATGCGGAGCGCAAATGTATTGACTATCAGGCAGAGATATTTGACGCGTGGGTCAAGAGTCATCCGAGTGCAAAAGAACTGCAACATAAGTCATTTTCGTTCTATGACGACTTGGCCATTGTATTCGGCAAAGATAGAGCCACGGGAAGTCGTGCAACCACCACTGCAGAGGTCGAATCTGAACCTGTTATGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTGATCTACCTTATGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCTGGCGGTAGAAGATCTACAAGTAGCATGCCATCAAAAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGTGGTTCGGGAAGGATTCCAACTTCTGACGAAGTCCATTGACGGCATTGCACAGCGTCGTCGCCGAGAACTTTACGCCGAGTTGCAATCAATTCCTAGTCTATCGGTGCAAGATGGTTTGACTGTTGCACACTCATTGCTTGCAGATCCGATGTTGTTAAGCCACTTCATGGACTTCCCACCACAGTGGAAGTACGACTATTGCATGCAAGTTCTTGGGCAACAACGGGATCCAGTCCCATGA ATGGAAACATCCGGATCACGCGCAAGAGCCACAAAACATATTTGGACGGATAAGGAGGACCGAATCCTCGTGGAGTGTTTGGTCCAATGCGTTCAGTCCGGGCACTGGCGAGTTGATAACGAGACTTTCCGACATGGATTCCTAGCGAACATACTGCGGATGATGCAGCAGAGGATTCCAGGGTGTTCCATACAGTGGGATGCGGAGCGCAAATGTATTGACTATCAGGCAGAGATATTTGACGCGTGGGTCAAGAGTCATCCGAGTGCAAAAGAACTGCAACATAAGTCATTTTCGTTCTATGACGACTTGGCCATTGTATTCGGCAAAGATAGAGCCACGGGAAGTCGTGCAACCACCACTGCAGAGGTCGAATCTGAACCTGTTATGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTGATCTACCTTATGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCTGGCGGTAGAAGATCTACAAGTAGCATGCCATCAAAAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGTGGTTCGGGAAGGATTCCAACTTCTGACGAAGTCCATTGACGGCATTGCACAGCGTCGTCGCCGAGAACTTTACGCCGAGTTGCAATCAATTCCTAGTCTATCGGTGCAAGATGGTTTGACTGTTGCACACTCATTGCTTGCAGATCCGATGTTGTTAAGCCACTTCATGGACTTCCCACCACAGTGGAAGTACGACTATTGCATGCAAGTTCTTGGGCAACAACGGGATCCAGTCCCATGA METSGSRARATKHIWTDKEDRILVECLVQCVQSGHWRVDNETFRHGFLANILRMMQQRIPGCSIQWDAERKCIDYQAEIFDAWVKSHPSAKELQHKSFSFYDDLAIVFGKDRATGSRATTTAEVESEPVMDEENEDILNNQSPDFENFYIPDLPYVNSPTSEDTPTTPGGRRSTSSMPSKSRRSRSSSIGEYSDVVREGFQLLTKSIDGIAQRRRRELYAELQSIPSLSVQDGLTVAHSLLADPMLLSHFMDFPPQWKYDYCMQVLGQQRDPVP Homology
BLAST of Clc10G18875 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]) HSP 1 Score: 192.2 bits (487), Expect = 5.9e-45 Identity = 112/266 (42.11%), Postives = 154/266 (57.89%), Query Frame = 0
BLAST of Clc10G18875 vs. NCBI nr
Match: KAA0063789.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 158.3 bits (399), Expect = 9.5e-35 Identity = 97/269 (36.06%), Postives = 139/269 (51.67%), Query Frame = 0
BLAST of Clc10G18875 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 151.8 bits (382), Expect = 8.8e-33 Identity = 96/275 (34.91%), Postives = 141/275 (51.27%), Query Frame = 0
BLAST of Clc10G18875 vs. NCBI nr
Match: TYK06362.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 151.0 bits (380), Expect = 1.5e-32 Identity = 90/269 (33.46%), Postives = 124/269 (46.10%), Query Frame = 0
BLAST of Clc10G18875 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 150.6 bits (379), Expect = 2.0e-32 Identity = 102/303 (33.66%), Postives = 146/303 (48.18%), Query Frame = 0
BLAST of Clc10G18875 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.9e-45 Identity = 112/266 (42.11%), Postives = 154/266 (57.89%), Query Frame = 0
BLAST of Clc10G18875 vs. ExPASy TrEMBL
Match: A0A5A7VE44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00500 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 4.6e-35 Identity = 97/269 (36.06%), Postives = 139/269 (51.67%), Query Frame = 0
BLAST of Clc10G18875 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 4.3e-33 Identity = 96/275 (34.91%), Postives = 141/275 (51.27%), Query Frame = 0
BLAST of Clc10G18875 vs. ExPASy TrEMBL
Match: A0A5D3C542 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00540 PE=3 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 7.3e-33 Identity = 90/269 (33.46%), Postives = 124/269 (46.10%), Query Frame = 0
BLAST of Clc10G18875 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 9.5e-33 Identity = 102/307 (33.22%), Postives = 147/307 (47.88%), Query Frame = 0
BLAST of Clc10G18875 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 59.3 bits (142), Expect = 5.6e-09 Identity = 53/242 (21.90%), Postives = 104/242 (42.98%), Query Frame = 0
BLAST of Clc10G18875 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 7.0e-04 Identity = 37/124 (29.84%), Postives = 57/124 (45.97%), Query Frame = 0
BLAST of Clc10G18875 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 9.2e-04 Identity = 26/99 (26.26%), Postives = 43/99 (43.43%), Query Frame = 0
BLAST of Clc10G18875 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 9.2e-04 Identity = 26/99 (26.26%), Postives = 43/99 (43.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|