Clc10G17200 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G17200
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Location	ClcChr10: 31114654 .. 31115091 (-)
RNA-Seq Expression	Clc10G17200
Synteny	Clc10G17200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTGTGTATTAGGCAATAAAAAACTAGATGATGAAATGCAACGTGATATTGTTAAGATTGGGAACTTGGTACACAAGAAGGTAAATGTCATTCATTTACTACATTGGTATATGGGTTTGGAATTTTATAGAGAATAACTGAAATGATTTCATCCGTGGGGTTATTCGTGTGTGAAATCCATTGATCTTTTGTGGTAGTATATGAATTACAAGGTCTCTGGACCTTGTCCTGACGATTGGAGCCTTGCTCAGAAGTTGATTCTGCGTGGATGCGAGCCGTTGCCGAGGCGGAGGTGTTTGGCCAAATCTGTGCAAAAGGTAGGTTTACAACCTTTCCCTTGGTCTCTATTGAAACCTGTTAGTGATAAGATTGTTATGTGGAGTGGGCTTAGCTTGGATGTAAAAATTTTCGGTGTTAGAATAGTAAGAAATTAG

mRNA sequence

ATGGTCTGTGTATTAGGCAATAAAAAACTAGATGATGAAATGCAACGTGATATTGTTAAGATTGGGAACTTGGTACACAAGAAGTATATGAATTACAAGGTCTCTGGACCTTGTCCTGACGATTGGAGCCTTGCTCAGAAGTTGATTCTGCGTGGATGCGAGCCGTTGCCGAGGCGGAGGTGTTTGGCCAAATCTGTGCAAAAGGTAGGTTTACAACCTTTCCCTTGGTCTCTATTGAAACCTGTTAGTGATAAGATTGTTATGTGGAGTGGGCTTAGCTTGGATGTAAAAATTTTCGGTGTTAGAATAGTAAGAAATTAG

Coding sequence (CDS)

ATGGTCTGTGTATTAGGCAATAAAAAACTAGATGATGAAATGCAACGTGATATTGTTAAGATTGGGAACTTGGTACACAAGAAGTATATGAATTACAAGGTCTCTGGACCTTGTCCTGACGATTGGAGCCTTGCTCAGAAGTTGATTCTGCGTGGATGCGAGCCGTTGCCGAGGCGGAGGTGTTTGGCCAAATCTGTGCAAAAGGTAGGTTTACAACCTTTCCCTTGGTCTCTATTGAAACCTGTTAGTGATAAGATTGTTATGTGGAGTGGGCTTAGCTTGGATGTAAAAATTTTCGGTGTTAGAATAGTAAGAAATTAG

Protein sequence

MVCVLGNKKLDDEMQRDIVKIGNLVHKKYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIVMWSGLSLDVKIFGVRIVRN

Homology

[Close]

BLAST of Clc10G17200 vs. NCBI nr
Match: XP_023527876.1 (uncharacterized protein LOC111790964 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527877.1 uncharacterized protein LOC111790964 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDKIV
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPSSLWKPVSDKIV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. NCBI nr
Match: KAG6580780.1 (hypothetical protein SDJN03_20782, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDKIV
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPSSLWKPVSDKIV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. NCBI nr
Match: XP_022982960.1 (uncharacterized protein LOC111481651 [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDKIV
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPSSLWKPVSDKIV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. NCBI nr
Match: XP_004136545.1 (uncharacterized protein LOC101215265 [Cucumis sativus] >KGN59257.1 hypothetical protein Csa_001674 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDKIV
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPISLWKPVSDKIV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. NCBI nr
Match: XP_008442993.1 (PREDICTED: uncharacterized protein LOC103486724 [Cucumis melo] >KAA0043768.1 Methyltransf_29 domain-containing protein [Cucumis melo var. makuwa] >TYK25366.1 Methyltransf_29 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDKIV
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPISLWKPVSDKIV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. ExPASy Swiss-Prot
Match: Q8RWB7 (Probable methyltransferase At1g29790 OS=Arabidopsis thaliana OX=3702 GN=CLSC5 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-07
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 23  NLVHKKYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPV 82
           +L+H +YMNY     CP D  L +KLILRGC PLPRRRC +++       P   S  KP 
Sbjct: 114 DLLH-EYMNYTPFSLCPSDTDLVEKLILRGCHPLPRRRCFSRT-------PRNPSDSKPE 171

Query: 83  SDKIVMWS 91
           S+  V+WS
Sbjct: 174 SN--VLWS 171

[Close]

BLAST of Clc10G17200 vs. ExPASy TrEMBL
Match: A0A5A7TLP5 (Methyltransf_29 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005050 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDKIV
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPISLWKPVSDKIV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. ExPASy TrEMBL
Match: A0A6J1J4B7 (uncharacterized protein LOC111481651 OS=Cucurbita maxima OX=3661 GN=LOC111481651 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDKIV
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPSSLWKPVSDKIV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. ExPASy TrEMBL
Match: A0A0A0LEX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G791480 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDKIV
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPISLWKPVSDKIV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. ExPASy TrEMBL
Match: A0A1S3B731 (uncharacterized protein LOC103486724 OS=Cucumis melo OX=3656 GN=LOC103486724 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDKIV
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPISLWKPVSDKIV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. ExPASy TrEMBL
Match: A0A6J1DEK9 (uncharacterized protein LOC111019353 OS=Momordica charantia OX=3673 GN=LOC111019353 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSV KVGLQPFP SL KPVSDK+V
Sbjct: 147 QYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVPKVGLQPFPASLWKPVSDKLV 206

Query: 88  MWSGL 93
           MWSGL
Sbjct: 207 MWSGL 211

[Close]

BLAST of Clc10G17200 vs. TAIR 10
Match: AT5G40830.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-20
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YM+Y V   CPDDWSLAQKLILR CEPLPRRRCLAK+V K GL  FP SL +PV +  V
Sbjct: 145 QYMSYNVFEKCPDDWSLAQKLILRACEPLPRRRCLAKTVHKPGLALFPDSLWRPVGNSSV 204

Query: 88  MWSGL 93
            WSGL
Sbjct: 205 NWSGL 209

[Close]

BLAST of Clc10G17200 vs. TAIR 10
Match: AT5G40830.2 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-20
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YM+Y V   CPDDWSLAQKLILR CEPLPRRRCLAK+V K GL  FP SL +PV +  V
Sbjct: 145 QYMSYNVFEKCPDDWSLAQKLILRACEPLPRRRCLAKTVHKPGLALFPDSLWRPVGNSSV 204

Query: 88  MWSGL 93
            WSGL
Sbjct: 205 NWSGL 209

[Close]

BLAST of Clc10G17200 vs. TAIR 10
Match: AT3G27230.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-20
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 28  KYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFPWSLLKPVSDKIV 87
           +YM+YKV   CPDDWSL QKLILR CEPLPRRRCLAK+VQK  L   P SL + VS+K V
Sbjct: 145 QYMSYKVFDRCPDDWSLGQKLILRACEPLPRRRCLAKTVQKQDLSKSPDSLWRSVSNKSV 204

Query: 88  MWSGL 93
            WSGL
Sbjct: 205 NWSGL 209

[Close]

BLAST of Clc10G17200 vs. TAIR 10
Match: AT3G05390.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 7.9e-12
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 27  KKYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFP--WSLLKPVSD 86
           +KYM+Y V   C DDW+LAQKL+L GC+PLPRRRCL ++      +P+P   SL K   D
Sbjct: 192 EKYMDYDVGAYCDDDWNLAQKLMLNGCDPLPRRRCLTRA-SMTYQKPYPINESLWKLPDD 251

Query: 87  KIVMW 90
           + V W
Sbjct: 252 RNVRW 255

[Close]

BLAST of Clc10G17200 vs. TAIR 10
Match: AT4G01240.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-10
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 27  KKYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRCLAKSVQKVGLQPFP--WSLLKPVSD 86
           ++YM+Y V   C DDW LAQKL++ GC+PLPRRRC ++  Q +  +PFP   SL K   +
Sbjct: 376 EEYMDYDVGEICNDDWRLAQKLMVHGCDPLPRRRCFSRGPQ-LYHKPFPINESLWKLPDN 435

Query: 87  KIVMW 90
           + V W
Sbjct: 436 RNVRW 439

The following BLAST results are available for this feature:

BLAST of Clc10G17200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527876.1	2.1e-27	93.85	uncharacterized protein LOC111790964 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
KAG6580780.1	2.1e-27	93.85	hypothetical protein SDJN03_20782, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022982960.1	2.1e-27	93.85	uncharacterized protein LOC111481651 [Cucurbita maxima]	[more]
XP_004136545.1	2.1e-27	93.85	uncharacterized protein LOC101215265 [Cucumis sativus] >KGN59257.1 hypothetical ...	[more]
XP_008442993.1	2.1e-27	93.85	PREDICTED: uncharacterized protein LOC103486724 [Cucumis melo] >KAA0043768.1 Met...	[more]

BLAST of Clc10G17200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWB7	3.4e-07	47.06	Probable methyltransferase At1g29790 OS=Arabidopsis thaliana OX=3702 GN=CLSC5 PE...	[more]

BLAST of Clc10G17200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLP5	1.0e-27	93.85	Methyltransf_29 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1J4B7	1.0e-27	93.85	uncharacterized protein LOC111481651 OS=Cucurbita maxima OX=3661 GN=LOC111481651...	[more]
A0A0A0LEX5	1.0e-27	93.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G791480 PE=3 SV=1	[more]
A0A1S3B731	1.0e-27	93.85	uncharacterized protein LOC103486724 OS=Cucumis melo OX=3656 GN=LOC103486724 PE=...	[more]
A0A6J1DEK9	1.8e-27	92.31	uncharacterized protein LOC111019353 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of Clc10G17200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40830.1	1.2e-20	69.23	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]
AT5G40830.2	1.2e-20	69.23	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]
AT3G27230.1	4.6e-20	69.23	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]
AT3G05390.1	7.9e-12	50.77	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G01240.1	3.3e-10	47.69	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR44067:SF3	S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN	coord: 27..93
None	No IPR available	PANTHER	PTHR44067	S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED	coord: 27..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G17200.2	Clc10G17200.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0008168	methyltransferase activity