Clc10G13075 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G13075
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pentatricopeptide repeat-containing protein
Location	ClcChr10: 26634631 .. 26635059 (+)
RNA-Seq Expression	Clc10G13075
Synteny	Clc10G13075

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTAAAAGAAATAGTTATCTGGAGTCTGATCATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGAAGTTATGCCCAACGAAGTAACATTTCTCTCATTGTTACTGCTTGTAGCCACGCCAGTTTAATTTAAGAAGGGATGAAGATATTCAACATGATGTTGCATGAATACAGAATAAAACCCAACACAGAGCATTATGTCATCAATGTCAATCTTCTTGGTCGAACAGGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTCATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA

mRNA sequence

ATGAAAGTAAAAGAAATAGTTATCTGGAGTCTGATCATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGAAGTTATGCCCAACGAAGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTCATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA

Coding sequence (CDS)

ATGAAAGTAAAAGAAATAGTTATCTGGAGTCTGATCATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGAAGTTATGCCCAACGAAGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTCATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA

Protein sequence

MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTGQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNLRDEGYFKILFTEH

Homology

[Close]

BLAST of Clc10G13075 vs. NCBI nr
Match: XP_008464928.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis melo] >KAA0057245.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK18716.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 473 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 514

[Close]

BLAST of Clc10G13075 vs. NCBI nr
Match: KGN59830.2 (hypothetical protein Csa_001071 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 311 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 352

[Close]

BLAST of Clc10G13075 vs. NCBI nr
Match: KGN59830.2 (hypothetical protein Csa_001071 [Cucumis sativus])

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-02
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL 81
           G+SVIEAG EVHS V +DRLH ESD I+RL  NL
Sbjct: 490 GESVIEAGNEVHSFVANDRLHSESDQIYRLLRNL 523

HSP 2 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 473 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 514

[Close]

BLAST of Clc10G13075 vs. NCBI nr
Match: XP_011652303.1 (putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus])

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-02
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL 81
           G+SVIEAG EVHS V +DRLH ESD I+RL  NL
Sbjct: 652 GESVIEAGNEVHSFVANDRLHSESDQIYRLLRNL 685

HSP 2 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEA 60
           MKVK+IV WS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE 
Sbjct: 471 MKVKDIVTWSAIIAGYGIQGQGREALKLFDKMRETSEVMANEVTFLSLLSACSHAGLIEE 530

Query: 61  GTEVHSSVTDD-RLHPESDH 73
           G ++ + + ++ R+ P  +H
Sbjct: 531 GIKIFNMMLNEYRIEPNMEH 550

[Close]

BLAST of Clc10G13075 vs. NCBI nr
Match: KAG6581055.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEA 60
           MKVK+IV WS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE 
Sbjct: 471 MKVKDIVTWSAIIAGYGIQGQGREALKLFDKMRETSEVMANEVTFLSLLSACSHAGLIEE 530

Query: 61  GTEVHSSVTDD-RLHPESDH 73
           G ++ + + ++ R+ P  +H
Sbjct: 531 GIKIFNMMLNEYRIEPNMEH 550

[Close]

BLAST of Clc10G13075 vs. ExPASy Swiss-Prot
Match: Q9SS97 (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E87 PE=3 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-04
Identity = 26/78 (33.33%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 3   VKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGT 62
           +K+ V+W+ ++ GYGI G+G + L+ F+ M+++SEV PNE          +   +I  G 
Sbjct: 429 LKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGL 488

Query: 63  EVHS-SVTDDRLHPESDH 73
            +    V D RL P  +H
Sbjct: 489 RIFKLMVNDYRLAPNLEH 506

[Close]

BLAST of Clc10G13075 vs. ExPASy TrEMBL
Match: A0A5A7UUL5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00170 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.6e-10
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 473 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 514

[Close]

BLAST of Clc10G13075 vs. ExPASy TrEMBL
Match: A0A5A7UUL5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00170 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 7.8e-03
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL----RDEGY 86
           G+SVIEAG EVHS V +DRLH E D I+RL  NL    RDE Y
Sbjct: 652 GESVIEAGNEVHSFVANDRLHSECDQIYRLLRNLNVNMRDESY 694

HSP 2 Score: 72.8 bits (177), Expect = 8.6e-10
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 379 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 420

[Close]

BLAST of Clc10G13075 vs. ExPASy TrEMBL
Match: A0A0A0LFK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G840360 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-02
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL 81
           G+SVIEAG EVHS V +DRLH ESD I+RL  NL
Sbjct: 558 GESVIEAGNEVHSFVANDRLHSESDQIYRLLRNL 591

HSP 2 Score: 72.8 bits (177), Expect = 8.6e-10
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 473 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 514

[Close]

BLAST of Clc10G13075 vs. ExPASy TrEMBL
Match: A0A1S3CMP5 (putative pentatricopeptide repeat-containing protein At3g01580 OS=Cucumis melo OX=3656 GN=LOC103502681 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 7.8e-03
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL----RDEGY 86
           G+SVIEAG EVHS V +DRLH E D I+RL  NL    RDE Y
Sbjct: 652 GESVIEAGNEVHSFVANDRLHSECDQIYRLLRNLNVNMRDESY 694

HSP 2 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEA 60
           MKVK+IV WS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE 
Sbjct: 379 MKVKDIVTWSAIIAGYGIQGQGREALKLFDKMRETSEVMANEVTFLSLLSACSHAGLIEE 438

Query: 61  GTEVHSSVTDD-RLHPESDH 73
           G ++ + + ++ R+ P  +H
Sbjct: 439 GIKIFNMMLNEYRIEPNMEH 458

[Close]

BLAST of Clc10G13075 vs. ExPASy TrEMBL
Match: A0A6J1F3K2 (putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442064 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEA 60
           MKVK+IV WS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE 
Sbjct: 471 MKVKDIVTWSAIIAGYGIQGQGREALKLFDKMRETSEVMANEVTFLSLLSACSHAGLIEE 530

Query: 61  GTEVHSSVTDD-RLHPESDH 73
           G ++ + + ++ R+ P  +H
Sbjct: 531 GIKIFNMMLNEYRIEPNMEH 550

[Close]

BLAST of Clc10G13075 vs. TAIR 10
Match: AT3G01580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 7.4e-06
Identity = 26/78 (33.33%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 3   VKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGT 62
           +K+ V+W+ ++ GYGI G+G + L+ F+ M+++SEV PNE          +   +I  G 
Sbjct: 429 LKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGL 488

Query: 63  EVHS-SVTDDRLHPESDH 73
            +    V D RL P  +H
Sbjct: 489 RIFKLMVNDYRLAPNLEH 506

[Close]

BLAST of Clc10G13075 vs. TAIR 10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 28/94 (29.79%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEA 60
           M  ++IV W+ ++ G+GI G G+E L LF+ M ET  V P+E          +   +++ 
Sbjct: 470 MHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETG-VNPDEVTLLAILSACSHSGLVDE 529

Query: 61  GTEVHSSVT--DDRLHPESDHIHRLQGNLRDEGY 86
           G ++ +S++  D  + P  DH + +   L   GY
Sbjct: 530 GKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGY 562

[Close]

BLAST of Clc10G13075 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 40.8 bits (94), Expect = 7.0e-04
Identity = 19/76 (25.00%), Postives = 40/76 (52.63%), Query Frame = 0


Query: 4   KEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTG-------QSVIEAGTE 63
           +++V+WS ++ GYG+ G+ RE + L+ + +E   V PN+    G         ++  G  
Sbjct: 387 RDVVVWSAMIVGYGLHGRAREAISLY-RAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 446

Query: 64  VHSSVTDDRLHPESDH 73
             + + D +++P+  H
Sbjct: 447 FFNRMADHKINPQQQH 461

The following BLAST results are available for this feature:

BLAST of Clc10G13075 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464928.1	1.8e-09	80.95	PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucum...	[more]
KGN59830.2	1.8e-09	80.95	hypothetical protein Csa_001071 [Cucumis sativus]	[more]
KGN59830.2	2.7e-02	70.59	hypothetical protein Csa_001071 [Cucumis sativus]	[more]
XP_011652303.1	2.7e-02	70.59	putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus]	[more]
KAG6581055.1	3.9e-09	50.00	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]

BLAST of Clc10G13075 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS97	1.0e-04	33.33	Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis th...	[more]

BLAST of Clc10G13075 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUL5	8.6e-10	80.95	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A5A7UUL5	7.8e-03	62.79	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A0A0LFK2	1.3e-02	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G840360 PE=4 SV=1	[more]
A0A1S3CMP5	7.8e-03	62.79	putative pentatricopeptide repeat-containing protein At3g01580 OS=Cucumis melo O...	[more]
A0A6J1F3K2	1.9e-09	50.00	putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 OS=Cuc...	[more]

BLAST of Clc10G13075 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01580.1	7.4e-06	33.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G16610.1	4.1e-04	29.79	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G12770.1	7.0e-04	25.00	mitochondrial editing factor 22	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 4..42
None	No IPR available	PANTHER	PTHR47925:SF12	SUBFAMILY NOT NAMED	coord: 4..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G13075.1	Clc10G13075.1	mRNA