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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. atggcttcctccatgagattccctccttttgctgctgttgttttggtatttgcaatggtgtgcttagaaatgaagaaggttcatagcattgaggatgagatagctccaatgcctgcaatggctgctggctctgcatttccttctactgttgcttttgctttcaattctgttttccctcttttgctttgtgtttttggtgtctaa mRNA sequence atggcttcctccatgagattccctccttttgctgctgttgttttggtatttgcaatggtgtgcttagaaatgaagaaggttcatagcattgaggatgagatagctccaatgcctgcaatggctgctggctctgcatttccttctactgttgcttttgctttcaattctgttttccctcttttgctttgtgtttttggtgtctaa Coding sequence (CDS) atggcttcctccatgagattccctccttttgctgctgttgttttggtatttgcaatggtgtgcttagaaatgaagaaggttcatagcattgaggatgagatagctccaatgcctgcaatggctgctggctctgcatttccttctactgttgcttttgctttcaattctgttttccctcttttgctttgtgtttttggtgtctaa Protein sequence MASSMRFPPFAAVVLVFAMVCLEMKKVHSIEDEIAPMPAMAAGSAFPSTVAFAFNSVFPLLLCVFGV
Homology
BLAST of Clc10G11620 vs. NCBI nr
Match: KGN58599.1 (hypothetical protein Csa_001638 [Cucumis sativus]) HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16 Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = 0
Query: 1 MASSMRFPPF--AAVVLVFAMVCLEMKKVHSIEDEIAPMPAMAAGSAFPSTVAFAFNSVF 60
MASSMRFP F AVVLV AMV +EMKKV SIEDE+APMPAMAAG AFPS+VA FN V
Sbjct: 1 MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60
Query: 61 PLLLCVFGV 68
PLLLCVFGV
Sbjct: 61 PLLLCVFGV 69
BLAST of Clc10G11620 vs. NCBI nr
Match: KAG6581583.1 (hypothetical protein SDJN03_21585, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 87.0 bits (214), Expect = 6.5e-14 Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0
Query: 1 MASSMRFPPF--AAVVLVFAMVCLEMKKVHSIEDEIAPMPAMAAGSAFPSTVAFAFNSVF 60
MA SMR P + A VL AMVC EMKKVH IE EI+PMPAMAAGSA PSTVA+AFN+VF
Sbjct: 1 MAPSMRLPHYYATAAVLALAMVCFEMKKVHGIEAEISPMPAMAAGSASPSTVAYAFNAVF 60
Query: 61 PLLLCVFG 67
P LLC FG
Sbjct: 61 P-LLCTFG 67
BLAST of Clc10G11620 vs. ExPASy TrEMBL
Match: A0A0A0LCE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 8.9e-17 Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = 0
Query: 1 MASSMRFPPF--AAVVLVFAMVCLEMKKVHSIEDEIAPMPAMAAGSAFPSTVAFAFNSVF 60
MASSMRFP F AVVLV AMV +EMKKV SIEDE+APMPAMAAG AFPS+VA FN V
Sbjct: 1 MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60
Query: 61 PLLLCVFGV 68
PLLLCVFGV
Sbjct: 61 PLLLCVFGV 69
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN58599.1 | 1.8e-16 | 78.26 | hypothetical protein Csa_001638 [Cucumis sativus] | [more] |
| KAG6581583.1 | 6.5e-14 | 72.06 | hypothetical protein SDJN03_21585, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LCE5 | 8.9e-17 | 78.26 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
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