Clc10G10605 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G10605
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr10: 23760060 .. 23760474 (+)
RNA-Seq Expression	Clc10G10605
Synteny	Clc10G10605

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGATTGCATCTAGTTAATTGTAACCAAGCAAGTAACAAAGACCTTGTAGATTCTAAGTATACATGTCGCACTTCGATTTTTATCTCAAATTTAGCTCAGTTGTCATATTTAACTTTTGCTAGATTCAATGAACGCTCAAGCTCAAGAAGATATTCCTCCAAGGCCTCGGGTTAAGGTCTCATTTTGCTTAGGGTCAGAGACACATTTGATCAATACAGCTAATCAAGGCACTCTCTCAGAGCAGTTGATTTCTATGAAAGAAGAGAGCATGGTCATTTTGAAGGAATACATAACCAAACATAATGTTCCTATCGATGTCCCGGATGAACTAGTTGAAGAAGCTTCTGAGGACGAGGATCAAATCACTGAAAAGCCTTATGTGAAGTCCAAGAAGAAAAAATTAACATAA

mRNA sequence

ATGGCAAGATTGCATCTAGTTAATTGTAACCAAGCAAATTCAATGAACGCTCAAGCTCAAGAAGATATTCCTCCAAGGCCTCGGGTTAAGGTCTCATTTTGCTTAGGGTCAGAGACACATTTGATCAATACAGCTAATCAAGGCACTCTCTCAGAGCAGTTGATTTCTATGAAAGAAGAGAGCATGGTCATTTTGAAGGAATACATAACCAAACATAATGTTCCTATCGATGTCCCGGATGAACTAGTTGAAGAAGCTTCTGAGGACGAGGATCAAATCACTGAAAAGCCTTATGTGAAGTCCAAGAAGAAAAAATTAACATAA

Coding sequence (CDS)

ATGGCAAGATTGCATCTAGTTAATTGTAACCAAGCAAATTCAATGAACGCTCAAGCTCAAGAAGATATTCCTCCAAGGCCTCGGGTTAAGGTCTCATTTTGCTTAGGGTCAGAGACACATTTGATCAATACAGCTAATCAAGGCACTCTCTCAGAGCAGTTGATTTCTATGAAAGAAGAGAGCATGGTCATTTTGAAGGAATACATAACCAAACATAATGTTCCTATCGATGTCCCGGATGAACTAGTTGAAGAAGCTTCTGAGGACGAGGATCAAATCACTGAAAAGCCTTATGTGAAGTCCAAGAAGAAAAAATTAACATAA

Protein sequence

MARLHLVNCNQANSMNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNVPIDVPDELVEEASEDEDQITEKPYVKSKKKKLT

Homology

[Close]

BLAST of Clc10G10605 vs. NCBI nr
Match: XP_008443784.1 (PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 9.1e-34
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 13  NSMNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKH 72
           +SM+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKH
Sbjct: 5   DSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKH 64

Query: 73  NVPIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 108
           NVP DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 65  NVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of Clc10G10605 vs. NCBI nr
Match: KAA0035148.1 (uncharacterized protein E6C27_scaffold57G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 9.1e-34
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 13  NSMNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKH 72
           +SM+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKH
Sbjct: 17  DSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKH 76

Query: 73  NVPIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 108
           NVP DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 77  NVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 111

[Close]

BLAST of Clc10G10605 vs. NCBI nr
Match: TYK29223.1 (uncharacterized protein E5676_scaffold1228G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.5e-33
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 15  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 74
           M+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKHNV
Sbjct: 1   MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 60

Query: 75  PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 108
           P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 61  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of Clc10G10605 vs. NCBI nr
Match: XP_011660264.1 (uncharacterized protein LOC105436354 [Cucumis sativus] >XP_031736764.1 uncharacterized protein LOC105436354 [Cucumis sativus] >KGN66757.1 hypothetical protein Csa_007293 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 15  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 74
           M+A A+EDIP RPRVKVS CLGSETHL+NTAN+GTLSEQL SMKE+SM ILKEYITKHNV
Sbjct: 1   MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 75  PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 108
           P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 61  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of Clc10G10605 vs. NCBI nr
Match: KAG7036645.1 (hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-29
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 10  NQANSMNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYI 69
           +Q +SM+AQAQE I   PRVK SF LGSE HL+NTAN+GTLSEQLISMKEESM ILKEYI
Sbjct: 99  SQCDSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYI 158

Query: 70  TKHNVPIDVPDELVEEASE-DEDQITEKPYVKSKKKKLT 108
           TKHNVP DVPDEL+EEASE D+D+ TEKP VKSKK KLT
Sbjct: 159 TKHNVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 197

[Close]

BLAST of Clc10G10605 vs. ExPASy TrEMBL
Match: A0A5A7SX16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002390 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 13  NSMNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKH 72
           +SM+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKH
Sbjct: 17  DSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKH 76

Query: 73  NVPIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 108
           NVP DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 77  NVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 111

[Close]

BLAST of Clc10G10605 vs. ExPASy TrEMBL
Match: A0A1S3B8U1 (uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 13  NSMNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKH 72
           +SM+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKH
Sbjct: 5   DSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKH 64

Query: 73  NVPIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 108
           NVP DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 65  NVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of Clc10G10605 vs. ExPASy TrEMBL
Match: A0A5D3DZN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228G00090 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 15  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 74
           M+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKHNV
Sbjct: 1   MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 60

Query: 75  PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 108
           P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 61  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of Clc10G10605 vs. ExPASy TrEMBL
Match: A0A0A0M0V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.4e-33
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 15  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 74
           M+A A+EDIP RPRVKVS CLGSETHL+NTAN+GTLSEQL SMKE+SM ILKEYITKHNV
Sbjct: 1   MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 75  PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 108
           P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 61  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of Clc10G10605 vs. ExPASy TrEMBL
Match: A0A6J1G9M3 (uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC111452065 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.3e-29
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 15  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 74
           M+AQAQE I   PRVK SF LGSE HL+NTAN+GTLSEQLISMKEESM ILKEYITKHNV
Sbjct: 1   MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 75  PIDVPDELVEEASE-DEDQITEKPYVKSKKKKLT 108
           P DVPDEL+EEASE D+D+ TEKP VKSKK KLT
Sbjct: 61  PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 94

[Close]

BLAST of Clc10G10605 vs. TAIR 10
Match: AT1G47820.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-12
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 15  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 74
           M  ++   +P +  VKV F LG+E++ I++    T+ +QL+SMKEESM ILK++ITKHNV
Sbjct: 1   MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 75  P-IDVPDELV---EEASEDEDQITEKPYVKSKKKKL 107
           P  DVPD+++   EE  +D+      P    KK K+
Sbjct: 61  PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTKI 96

[Close]

BLAST of Clc10G10605 vs. TAIR 10
Match: AT1G47820.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-12
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 15  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 74
           M  ++   +P +  VKV F LG+E++ I++    T+ +QL+SMKEESM ILK++ITKHNV
Sbjct: 1   MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 75  P-IDVPDELV---EEASEDEDQITEKPYVKSKKKKL 107
           P  DVPD+++   EE  +D+      P    KK K+
Sbjct: 61  PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTKI 96

The following BLAST results are available for this feature:

BLAST of Clc10G10605 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443784.1	9.1e-34	82.11	PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo]	[more]
KAA0035148.1	9.1e-34	82.11	uncharacterized protein E6C27_scaffold57G002390 [Cucumis melo var. makuwa]	[more]
TYK29223.1	3.5e-33	82.80	uncharacterized protein E5676_scaffold1228G00090 [Cucumis melo var. makuwa]	[more]
XP_011660264.1	1.3e-32	81.72	uncharacterized protein LOC105436354 [Cucumis sativus] >XP_031736764.1 uncharact...	[more]
KAG7036645.1	1.0e-29	77.78	hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc10G10605 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G10605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SX16	4.4e-34	82.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B8U1	4.4e-34	82.11	uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=...	[more]
A0A5D3DZN8	1.7e-33	82.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0M0V3	6.4e-33	81.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1	[more]
A0A6J1G9M3	7.3e-29	79.79	uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]

BLAST of Clc10G10605 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47820.1	4.7e-12	42.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G47820.2	4.7e-12	42.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..107
None	No IPR available	PANTHER	PTHR37194	T2E6.7-RELATED	coord: 15..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G10605.1	Clc10G10605.1	mRNA