Clc10G09800 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G09800
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	UBP-type domain-containing protein
Location	ClcChr10: 22114811 .. 22117171 (+)
RNA-Seq Expression	Clc10G09800
Synteny	Clc10G09800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTTTTGCACTTCTCTAATTAGACGCTGCAAAGTAGAAGGTTGTGGGTGTTAGTTTCATCTGTCTGTTCGTCAATGGCGAAAGAAGCCGGCTCGTCCTCTTCCAACCCACTGGTATTCTAATCAATAACTCACTCATTTGATTGCCCCAAAAATTCCGAGTTCCTATATTTCGTTCGATGATCTTGACTAATGTTGTTTTTCCTCTTCTCTAGCTACTCATACTCGAAGAAGAAGCTGAGGAAGAACTCTTGTACGGCGCCGAATCGGGATGGGTCGAGGCTCTAACTTCTTGCGATCATCTCGTTTCCCTATCTTCCGACCTCACTCACATTCCGCCCCCTGATACTCCCTGCACCGAGTCAGTTTTTCGTTTCCCTAAACTATGTATTTAGTTCTTGTTTTTGTTGTTCATCATAGGCTTCGAGTTTAGGGTCCTTTCAATTTCTGCAATTTTCAGTTTGATTTCCATTCTGGTGAGAACATTGCTGATGGAAAATATGCTAAATTGATGTTTTGATTTGGATTTTTTTTTTTCTCTCTTTGAGATTTTGCTCTATCGATCTTAAATGTTTTGGTTGATAATTGGTTTAAAACCTATTTCGGTATTTATACTTTTAAAATGTCAATTTTAATTCCTAAACCTTCAAGTTTGGTTCATTTTAGTCTTCAAAATTTTAAAATGTAACTTTCAAAATATACCTCTTTTGGTCCTTACACATTTTGAAAATTTAGGGACCAAAATAGATCAAACATAAAAAAAATGTAGGTACTAAAATGAGATTAAATTTTGATAATTTGAGACTTGAGCACAGTTCCAATAGTTAGATAATGATAATTTATATCTTTATTTTGTGTTGTGTTCGAATCTTCCTACCCCATTTGGTATTGTGAAGAAAATTTGTCTTTCGTGGACCTTAGGAGTTAGGTCTTTATCAAGACTCTAAATATGGTAATTATCACTCTCTCCTCCAACCTTGCATCAATAGGTTATTAGATTTTTTTTTATAGAACCCAAACATATTGAAATATAAAAGGTAAAGAATTTCAAGATTAACAAGTACTTCAAGGTACTTACACCCTCCTTCTTGAGATCACTCTCAAGCTCTAATTCTCAATGAAATATTGTCTATCCTCTTGATGCAGCGGGTGAAAGGTATTAGGGCCAAATCCATGGCCAAACAAGGAAAATCCATCCCTAAAGTTGAGAGAGAACTCTCCAAAGAATAAAAGTTTAATATTCAAATGAGATTACAAAAACTTCCTATTACAATCCTAAAAGTGGCTATTTATAGCCTTACAACCAAACTCCATAACAAGCTTCTTATCTAATTACGAAAACATTTTTATCTATGAAACATGCCACTACATGAAAATAAAGTAGTAATGCCTTTATTTTATCCTGCATTTGCCTCTTTCGCTGGCTGAGATCTGTTTGGTTTATGAAAGAATTGTTTTCTTAATTAAAATTCTTTTAAACGAAACTGAGATATCTGGTGGCTCTGTATGAGTATAATGTAAGTACATTTTAGCATCATAACATCACATGAGCATATCTAAGTCAGGTTCTTTTCTTTGTCAATTTTTGTATGAATTGTAAGTGGTGTATTATTGTCTCTATAAGGGCTTTCAGACTGATTTTCGTGTTTTTGTTTGGTTTTACTTTTCATGATTTGGATAAACACATTTCTATTAGTTTATTAATCCATGGAACAATCTACATTTGCAAGATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCATCATTTTGAGCAATCAACTCATTGCCTTGCACTCAGCTACAGGTGGATGTAAAATGGTTCTTTAAATTGTACTCTACTTTCTTCTTTCATTTTTTTTTCTCAAAAATTATGAATATAGGTTTGTCAAGTTCATTAATAATTTGCGTTTGGAAACAGTGATTTGTCGGTTTGGTGCTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTGAAATTTGGTGAGGCCCCGCCATTTCGATAGAATTTATCATCCTGCGGGGGAACTGAAATATCAGATTATTTAGTGTCATAACTTTTATAGTCTCTACATATTAGATGTCTTGATTTCTTGTTTTGTAGAATTGAGTAAATGTGTTCATTGTAAGTTGTTAACTTTAAAGAGTGAGGGATAGATTAGAATCACCTATATTGTTAAAAAATTTTAGGAAGTTTTTACTTGAAGCTGACAAATCTTCTTATTACAAACCTTGATGATAACACTAATGAAATTGGTTCCCCATTTTTGTCA

mRNA sequence

AAACTTTTGCACTTCTCTAATTAGACGCTGCAAAGTAGAAGGTTGTGGGTGTTAGTTTCATCTGTCTGTTCGTCAATGGCGAAAGAAGCCGGCTCGTCCTCTTCCAACCCACTGCTACTCATACTCGAAGAAGAAGCTGAGGAAGAACTCTTGTACGGCGCCGAATCGGGATGGGTCGAGGCTCTAACTTCTTGCGATCATCTCGTTTCCCTATCTTCCGACCTCACTCACATTCCGCCCCCTGATACTCCCTGCACCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCATCATTTTGAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGCTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTGAAATTTGGTGAGGCCCCGCCATTTCGATAGAATTTATCATCCTGCGGGGGAACTGAAATATCAGATTATTTAGTGTCATAACTTTTATAGTCTCTACATATTAGATGTCTTGATTTCTTGTTTTGTAGAATTGAGTAAATGTGTTCATTGTAAGTTGTTAACTTTAAAGAGTGAGGGATAGATTAGAATCACCTATATTGTTAAAAAATTTTAGGAAGTTTTTACTTGAAGCTGACAAATCTTCTTATTACAAACCTTGATGATAACACTAATGAAATTGGTTCCCCATTTTTGTCA

Coding sequence (CDS)

ATGGCGAAAGAAGCCGGCTCGTCCTCTTCCAACCCACTGCTACTCATACTCGAAGAAGAAGCTGAGGAAGAACTCTTGTACGGCGCCGAATCGGGATGGGTCGAGGCTCTAACTTCTTGCGATCATCTCGTTTCCCTATCTTCCGACCTCACTCACATTCCGCCCCCTGATACTCCCTGCACCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCATCATTTTGAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGCTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTGAAATTTGGTGAGGCCCCGCCATTTCGATAG

Protein sequence

MAKEAGSSSSNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

Homology

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BLAST of Clc10G09800 vs. NCBI nr
Match: XP_038904979.1 (histone deacetylase 6 [Benincasa hispida])

HSP 1 Score: 280.8 bits (717), Expect = 6.6e-72
Identity = 132/144 (91.67%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAKEAGSSSSNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDTPC 60
           MAKEAGSSSSNPL LILEEE EEELLYGAESGWVEALTSCDHL  LS DL HIPPPD PC
Sbjct: 1   MAKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLALLSPDLAHIPPPDIPC 60

Query: 61  TECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLDAQ 120
           +ECQNPKENWLCL CKDVFCSRFVNKHML H+EQ THCLALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  SECQNPKENWLCLSCKDVFCSRFVNKHMLQHYEQVTHCLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 VIQELRPVHEVAYILKFGEAPPFR 145
           VIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 VIQELRPVHEVAYILKFGEAPPFR 144

[Close]

BLAST of Clc10G09800 vs. NCBI nr
Match: XP_004152271.1 (histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015084 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70
Identity = 128/146 (87.67%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MAKEAGSSS--SNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDT 60
           MA++AGSSS  SNPL LI+E+E EEELLYGA SGWV+ALTSCDHL SLSSDL HIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  PCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PC++CQNPKENW+CLCCKDVFCSRFVNKHML H+EQSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 145
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of Clc10G09800 vs. NCBI nr
Match: XP_008454385.1 (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 127/148 (85.81%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MAKEAGSSSSN----PLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPP 60
           MA+EAGSSSS     PL++ +E+E EEELLYGA SGWV+ALTSCDHL SLSSDL HIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAY 120
            TPC++CQNPKENWLCLCCKDVFCSRFVNKHML H+EQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 145
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of Clc10G09800 vs. NCBI nr
Match: KAA0044348.1 (histone deacetylase 6 [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 4.0e-69
Identity = 126/148 (85.14%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MAKEAGSSSSN----PLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPP 60
           MA+EAGSSSS     PL++ +E+E EEELLYGA SGWV+ALTSCDHL SLSSDL HIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAY 120
            TPC++CQNPKENWLCLCCKDVFCSRFVNKHML H+EQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 145
           LDAQVIQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of Clc10G09800 vs. NCBI nr
Match: KAG6600290.1 (Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264.6 bits (675), Expect = 4.9e-67
Identity = 122/144 (84.72%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MAKEAGSSSSNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDTPC 60
           MA EAGSSSSNP   ++EEE  EE LYGAESGWVEALTSCDHL SL SDL HIPPPDT C
Sbjct: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60

Query: 61  TECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLDAQ 120
            EC+NPKENWLCLCCK+VFCSRFVNKHML H++QS H LALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  CECENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 VIQELRPVHEVAYILKFGEAPPFR 145
           +IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LIQELRPVHEVAYILKFGEAPPFR 144

[Close]

BLAST of Clc10G09800 vs. ExPASy Swiss-Prot
Match: Q9UBN7 (Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-17
Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 34   VEALTSCDHLVSLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFE 93
            V  L  C HLV++            PC +C   +ENW+CL C  V+C R++N HML H  
Sbjct: 1107 VTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHG 1166

Query: 94   QSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP 143
             S H L LSY DLS WC+ C AY+  Q + +   V  +A+  KFGE  P
Sbjct: 1167 NSGHPLVLSYIDLSAWCYYCQAYVHHQALLD---VKNIAHQNKFGEDMP 1212

[Close]

BLAST of Clc10G09800 vs. ExPASy Swiss-Prot
Match: Q9Z2V5 (Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-16
Identity = 51/144 (35.42%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 1    MAKEAGSSSSNPLLLI--LEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDT 60
            + + AG    N L+L     +   +++ Y      V  L+ C HL+++            
Sbjct: 1011 LGEAAGGQDMNSLMLTQGFGDFNTQDVFYA-----VTPLSWCPHLMAVCPIPAAGLDVSQ 1070

Query: 61   PCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLD 120
            PC  C   +ENW+CL C  V+CSR+VN HM+ H E S H L LS  DLS WC+ C AY+ 
Sbjct: 1071 PCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVH 1130

Query: 121  AQVIQELRPVHEVAYILKFGEAPP 143
                ++L+ V   A+  KFGE  P
Sbjct: 1131 H---EDLQDVKNAAHQNKFGEDMP 1146

[Close]

BLAST of Clc10G09800 vs. ExPASy Swiss-Prot
Match: Q20296 (Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 0


Query: 2   AKEAGSSSSNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPD---- 61
           +  +GSSSS+            E++    +  V  L +C HL     ++  +PP      
Sbjct: 822 SSSSGSSSSS-----TRPSHNLEIMDSGPAHAVVPLATCPHL----KEVKPLPPAKINAR 881

Query: 62  TPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYL 121
           T C+ECQ   E W CL C    C RFVN+H + H   S+H +ALS +DLSVWC+ CD+Y+
Sbjct: 882 TACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYV 941

Query: 122 DAQVIQELRPVHEVAYILKFGEAPP 143
                  L      A+  KFGE  P
Sbjct: 942 HNPA---LIGAKSAAHESKFGETMP 954

[Close]

BLAST of Clc10G09800 vs. ExPASy Swiss-Prot
Match: Q54QE6 (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 58  TPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYL 117
           T C  C +  ENW+C+ C  V CSR VN H   HFE + H ++ S+SD S WC++CD Y+
Sbjct: 32  TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

[Close]

BLAST of Clc10G09800 vs. ExPASy Swiss-Prot
Match: Q9H0E7 (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11
Identity = 28/84 (33.33%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 36  ALTSCDHL--VSLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFE 95
           A+ +C H+  + L+ D + + P    C +C   +  W CL C  V C R++ +H L HF+
Sbjct: 3   AMDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQ 62

Query: 96  QSTHCLALSYSDLSVWCFSCDAYL 118
           +S+H +AL  +++ V+C+ CD Y+
Sbjct: 63  ESSHPVALEVNEMYVFCYLCDDYV 86

[Close]

BLAST of Clc10G09800 vs. ExPASy TrEMBL
Match: A0A0A0KT14 (UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 128/146 (87.67%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MAKEAGSSS--SNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDT 60
           MA++AGSSS  SNPL LI+E+E EEELLYGA SGWV+ALTSCDHL SLSSDL HIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  PCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PC++CQNPKENW+CLCCKDVFCSRFVNKHML H+EQSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 145
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of Clc10G09800 vs. ExPASy TrEMBL
Match: A0A1S3BZ94 (histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.7e-70
Identity = 127/148 (85.81%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MAKEAGSSSSN----PLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPP 60
           MA+EAGSSSS     PL++ +E+E EEELLYGA SGWV+ALTSCDHL SLSSDL HIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAY 120
            TPC++CQNPKENWLCLCCKDVFCSRFVNKHML H+EQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 145
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of Clc10G09800 vs. ExPASy TrEMBL
Match: A0A5A7TNA2 (Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00740 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.9e-69
Identity = 126/148 (85.14%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MAKEAGSSSSN----PLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPP 60
           MA+EAGSSSS     PL++ +E+E EEELLYGA SGWV+ALTSCDHL SLSSDL HIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAY 120
            TPC++CQNPKENWLCLCCKDVFCSRFVNKHML H+EQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 145
           LDAQVIQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of Clc10G09800 vs. ExPASy TrEMBL
Match: A0A6J1D695 (histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 120/144 (83.33%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MAKEAGSSSSNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDTPC 60
           MA EAGSSSSN    I+EEE EE+ L+GAE+GWVEALT CDHL SLSSDL HIP PDT C
Sbjct: 1   MANEAGSSSSNLPPCIIEEEGEEQ-LFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTAC 60

Query: 61  TECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLDAQ 120
           +ECQNPKENWLCLCCK++ CSRFVNKHML H++QSTHCLALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  SECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 VIQELRPVHEVAYILKFGEAPPFR 145
           VIQELRPV+EVAYILKFGEAPPFR
Sbjct: 121 VIQELRPVYEVAYILKFGEAPPFR 143

[Close]

BLAST of Clc10G09800 vs. ExPASy TrEMBL
Match: A0A061E839 (Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641 GN=TCM_007207 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 110/144 (76.39%), Postives = 126/144 (87.50%), Query Frame = 0


Query: 1   MAKEAGSSSSNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDTPC 60
           MA +AG+SSS+ L +ILEEE + +L+YGAESGWVEA T CDHL SLSSDL HIP P+TPC
Sbjct: 1   MADQAGASSSH-LKIILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNTPC 60

Query: 61  TECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLDAQ 120
             CQ+P ENWLCLCCKDV CSRFVNKHML H++Q+THC+ALSYSDLSVWCF+CD YLDAQ
Sbjct: 61  NRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHCIALSYSDLSVWCFACDTYLDAQ 120

Query: 121 VIQELRPVHEVAYILKFGEAPPFR 145
           VI++LRPVHE AYILKFGEAPP R
Sbjct: 121 VIRQLRPVHETAYILKFGEAPPHR 143

[Close]

BLAST of Clc10G09800 vs. TAIR 10
Match: AT2G14830.2 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 95/144 (65.97%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MAKEA--GSSSSNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDT 60
           MA++A   SSSS+P   + +E   ++ + GA SGWVEA  +CDHL +LS DL H+P PDT
Sbjct: 1   MAEKAPSSSSSSSPPKEVADE--TQDWILGAGSGWVEARKTCDHLNTLSPDLLHLPTPDT 60

Query: 61  PCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PC+ CQNP ENWLCLCCK+V CSRFVN+HML H +Q+ HCLALSYSDLSVWCF C+AYLD
Sbjct: 61  PCSRCQNPVENWLCLCCKEVLCSRFVNRHMLMHHQQTGHCLALSYSDLSVWCFCCEAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPP 143
           AQ+I +LRP+H+ AYILKFGEAPP
Sbjct: 121 AQIILQLRPIHQAAYILKFGEAPP 142

[Close]

BLAST of Clc10G09800 vs. TAIR 10
Match: AT2G14830.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-09
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1  MAKEA--GSSSSNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDT 60
          MA++A   SSSS+P   + +E   ++ + GA SGWVEA  +CDHL +LS DL H+P PDT
Sbjct: 1  MAEKAPSSSSSSSPPKEVADE--TQDWILGAGSGWVEARKTCDHLNTLSPDLLHLPTPDT 60

Query: 61 PCT 62
          PC+
Sbjct: 61 PCS 61

[Close]

BLAST of Clc10G09800 vs. TAIR 10
Match: AT2G26000.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 20/63 (31.75%), Postives = 33/63 (52.38%), Query Frame = 0


Query: 55  PPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCD 114
           P ++ C  CQ  +  W+C+ C  V C R+   H   H+E++ HC +L      VW ++ D
Sbjct: 213 PENSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGD 272

Query: 115 AYL 118
            Y+
Sbjct: 273 NYV 275

[Close]

BLAST of Clc10G09800 vs. TAIR 10
Match: AT2G26000.2 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 20/63 (31.75%), Postives = 33/63 (52.38%), Query Frame = 0


Query: 55  PPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCD 114
           P ++ C  CQ  +  W+C+ C  V C R+   H   H+E++ HC +L      VW ++ D
Sbjct: 213 PENSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGD 272

Query: 115 AYL 118
            Y+
Sbjct: 273 NYV 275

The following BLAST results are available for this feature:

BLAST of Clc10G09800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904979.1	6.6e-72	91.67	histone deacetylase 6 [Benincasa hispida]	[more]
XP_004152271.1	2.1e-70	87.67	histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015...	[more]
XP_008454385.1	1.4e-69	85.81	PREDICTED: histone deacetylase 6 [Cucumis melo]	[more]
KAA0044348.1	4.0e-69	85.14	histone deacetylase 6 [Cucumis melo var. makuwa]	[more]
KAG6600290.1	4.9e-67	84.72	Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc10G09800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UBN7	2.8e-17	41.28	Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2	[more]
Q9Z2V5	1.8e-16	35.42	Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3	[more]
Q20296	1.7e-14	35.17	Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2	[more]
Q54QE6	1.0e-11	46.67	NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE...	[more]
Q9H0E7	2.3e-11	33.33	Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 S...	[more]

BLAST of Clc10G09800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT14	1.0e-70	87.67	UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE...	[more]
A0A1S3BZ94	6.7e-70	85.81	histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1	[more]
A0A5A7TNA2	1.9e-69	85.14	Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A6J1D695	1.1e-64	83.33	histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1	[more]
A0A061E839	1.3e-60	76.39	Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641...	[more]

BLAST of Clc10G09800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14830.2	1.5e-53	65.97	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G14830.1	2.2e-09	50.79	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G26000.1	1.0e-06	31.75	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G26000.2	1.0e-06	31.75	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001607	Zinc finger, UBP-type	SMART	SM00290	Zf_UBP_1	coord: 59..108 e-value: 1.4E-8 score: 44.5
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 60..118 e-value: 4.5E-17 score: 62.1
IPR001607	Zinc finger, UBP-type	PROSITE	PS50271	ZF_UBP	coord: 58..119 score: 16.845263
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 34..141 e-value: 3.3E-29 score: 102.8
None	No IPR available	PANTHER	PTHR47665	HISTONE DEACETYLASE-LIKE PROTEIN	coord: 1..144
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 38..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G09800.1	Clc10G09800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009958	positive gravitropism
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0008270	zinc ion binding