Clc10G09795 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G09795
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	40S ribosomal protein S29
Location	ClcChr10: 22096980 .. 22098581 (-)
RNA-Seq Expression	Clc10G09795
Synteny	Clc10G09795

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCGGACCAGCAAACATCCTCCCCCAACCGGGTCGGGTAATTAAAACCGTACAAACACCACAATTAGGGTTTATCTCTCATATAAAAATCAATCCTTTTTGCCGTTTTCTTCTTCCTCGCAAAATTTCTGCTTCACATTGTGATTTCGAAGCATCTCGATCATGGGGCACTCCAACGTCTGGAACTCTCATCCTAAGAACTATGGCCCTGGTTCTCGGACTTGGTAAGCAAATATCTTCTCACTCCTCTGCTTTCTTGATGAATCACGAATCTGGAACACTAGTTTTCTTTTCTGTTTGTCCGGTTTATTTGAACACTAATATTTAATTATATTTCCTTGCGCGGTTTATAATGGAACCTGAAGAATGTTGTGCGATTGAGGATGTTACATTTCATGTTTGGATAGATAATTAGATGCCTAAGTTTCTGTTCGATTTTATATATTTGAACATGGATTTAAGTTTGACCTGTTGTTCTAAAGGTTGTCCCAACTTGGATGAGATTTTGTTATGCTTAAAATTTCTGTTGATTTCTGGGGTTTCTGTTTCCGCATTGTAAAAGCATTCACAATTGCAGAAGATTTCTAATTTGAACCTGGATTTACAAGGTGATTGTATCATTTAGATTGTTTAAGGTATAGTTTTCAGGTGAAAAGTTATAACTGATGTTCAATGATGTATGAGATCTTGTTTTCTATGTTTTTATACTGCTTTATACCTATTTTATTCTTCTATCCGTCTCTAATCTGAATGATTGTTCTTTGCTTGGTTGAGTTATTTGAATTTCCAAGTCTATCTGGATGATGAACTGTTCCTCCTAAATGCTAATAATTTGAGTATAACATATATATGTGTGTGTGTTATGAGATTGACAATCAAAGATAAATTGAATGTAAATAATAGAAATTCAACATAGAGATTTATGTGGTTCATTAAATGTGTTGGCTATATCCATGTGTAGAGGGAGAGATCAATTTTATTATTAGAGAAAATATCATATTTCAAATTTTGAGGTGCCAGTAGAGTTATAGAGTTTATCAAAGATAAACCCTAGGCCAATAGTGAGACCCATACTTGATCGTTTGGAGTGCAAGATAACATATTCAAGGCATTCCAACGATATGCCTACAAAGAAGCCTTTACTTATCATTATATTTTTTTTATTTTGGAGGCGTGGGCTGAATCTTGTTAAGAGCTTTTAACCCCATAAAGTGTAGGTAATTTATTGTCAATTACCCCAGAAGTTATCTAGTCTAGCTAATAGTAAAGGAACACATTATTATCCATAATGGATATCTTAGTGGTTACTGTTGAATATAGTATCCTTCACTTTTGAGAAAGCTGAATTTCAATAATTTCTTTCTTTCAGTTGTACTCTTTGGATGTTTTCTGCTCTTGTTTACTCTCCATTGTGTACTCTTTGGATATTTCATTCATCAATTAAATGTTTCTTATAGAAATAATAATAATAATTTCTTTCTTTCTTTCAGTCGTGTGTGTGGAAATCCCCATGGGTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTTCGTAGCAACGCCAAGGAAATTGGTTTCATTAAGGCAAGTTAA

mRNA sequence

ATGGACCGGACCAGCAAACATCCTCCCCCAACCGGGTCGGCATCTCGATCATGGGGCACTCCAACGTCTGGAACTCTCATCCTAAGAACTATGGCCCTGGTTCTCGGACTTGGTAAGCAAATATCTTCTCACTCCTCTGCTTTCTTGATGAATCACGAATCTGGAACACTAGTTTTCTTTTCTGTTTGTCCGTATCCTTCACTTTTGAGAAAGCTGAATTTCAATAATTTCTTTCTTTCAGTTGTACTCTTTGGATGTTTTCTGCTCTTGTTTACTCTCCATTGTGTACTCTTTGGATATTTCATTCATCAATTAAATGTTTCTTATAGAAATAATAATAATAATTTCTTTCTTTCTTTCAGTCGTGTGTGTGGAAATCCCCATGGGTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTTCGTAGCAACGCCAAGGAAATTGGTTTCATTAAGGCAAGTTAA

Coding sequence (CDS)

ATGGACCGGACCAGCAAACATCCTCCCCCAACCGGGTCGGCATCTCGATCATGGGGCACTCCAACGTCTGGAACTCTCATCCTAAGAACTATGGCCCTGGTTCTCGGACTTGGTAAGCAAATATCTTCTCACTCCTCTGCTTTCTTGATGAATCACGAATCTGGAACACTAGTTTTCTTTTCTGTTTGTCCGTATCCTTCACTTTTGAGAAAGCTGAATTTCAATAATTTCTTTCTTTCAGTTGTACTCTTTGGATGTTTTCTGCTCTTGTTTACTCTCCATTGTGTACTCTTTGGATATTTCATTCATCAATTAAATGTTTCTTATAGAAATAATAATAATAATTTCTTTCTTTCTTTCAGTCGTGTGTGTGGAAATCCCCATGGGTTGATCAGGAAGTATGGACTTATGTGTTGCAGACAATGCTTTCGTAGCAACGCCAAGGAAATTGGTTTCATTAAGGCAAGTTAA

Protein sequence

MDRTSKHPPPTGSASRSWGTPTSGTLILRTMALVLGLGKQISSHSSAFLMNHESGTLVFFSVCPYPSLLRKLNFNNFFLSVVLFGCFLLLFTLHCVLFGYFIHQLNVSYRNNNNNFFLSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

Homology

[Close]

BLAST of Clc10G09795 vs. NCBI nr
Match: KAF2309651.1 (hypothetical protein GH714_004459 [Hevea brasiliensis])

HSP 1 Score: 84.7 bits (208), Expect = 7.6e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 107 VSYRNNNNNFFLSF---SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 157
           +S RN   +F+  F   SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Sbjct: 269 LSGRNKKRSFWDCFSWASRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 321

[Close]

BLAST of Clc10G09795 vs. NCBI nr
Match: KAG6749024.1 (hypothetical protein POTOM_046066 [Populus tomentosa])

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-12
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 118 LSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 157
           + FSRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK+S
Sbjct: 4   IPFSRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKSS 42

[Close]

BLAST of Clc10G09795 vs. NCBI nr
Match: KAG6747635.1 (hypothetical protein POTOM_047525 [Populus tomentosa])

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 118 LSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           + FSRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK
Sbjct: 4   IPFSRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIK 40

[Close]

BLAST of Clc10G09795 vs. NCBI nr
Match: EXB80035.1 (40S ribosomal protein S29 [Morus notabilis])

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 120 FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Sbjct: 46  FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 80

[Close]

BLAST of Clc10G09795 vs. NCBI nr
Match: PNY01132.1 (40S ribosomal protein s29-like, partial [Trifolium pratense])

HSP 1 Score: 81.3 bits (199), Expect = 8.4e-12
Identity = 56/141 (39.72%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 14  ASRSWGTPTSGTLILRTMALVLGLGKQISSHSSAFLMNHESGTLVFFSVCPYPSLLRKLN 73
           +++ W T TSGTL  R M LVL L K +  H +  L    +  LV         +++  +
Sbjct: 27  SNKPWDTLTSGTLTPRPMVLVLALAKLVHFHGNCTLTVRGTAVLVL-------QVVKSTD 86

Query: 74  FNNFFLSVVLFGCFLLLFTLHCVLFGYFIHQLNVSYRNNNNNFFLSFSRVCGNPHGLIRK 133
            NN   +  L G                    +V YR+   +      RVCGN HGLIRK
Sbjct: 87  NNN---NEDLAG------------------NCSVVYRSLLPSETPISFRVCGNSHGLIRK 139

Query: 134 YGLMCCRQCFRSNAKEIGFIK 155
           YGLMCCRQCF SNAKEIGFIK
Sbjct: 147 YGLMCCRQCFHSNAKEIGFIK 139

[Close]

BLAST of Clc10G09795 vs. ExPASy Swiss-Prot
Match: Q680P8 (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-12
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 122 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 22  RVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of Clc10G09795 vs. ExPASy Swiss-Prot
Match: Q5I7K3 (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-12
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 122 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Sbjct: 22  RVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIK 54

[Close]

BLAST of Clc10G09795 vs. ExPASy Swiss-Prot
Match: P62276 (40S ribosomal protein S29 OS=Bos taurus OX=9913 GN=RPS29 PE=3 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 122 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Sbjct: 22  RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

[Close]

BLAST of Clc10G09795 vs. ExPASy Swiss-Prot
Match: P62273 (40S ribosomal protein S29 OS=Homo sapiens OX=9606 GN=RPS29 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 122 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Sbjct: 22  RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

[Close]

BLAST of Clc10G09795 vs. ExPASy Swiss-Prot
Match: P62274 (40S ribosomal protein S29 OS=Mus musculus OX=10090 GN=Rps29 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 122 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Sbjct: 22  RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54

[Close]

BLAST of Clc10G09795 vs. ExPASy TrEMBL
Match: A0A6A6M7F0 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004459 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-13
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 107 VSYRNNNNNFFLSF---SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 157
           +S RN   +F+  F   SRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Sbjct: 269 LSGRNKKRSFWDCFSWASRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 321

[Close]

BLAST of Clc10G09795 vs. ExPASy TrEMBL
Match: W9RIN5 (40S ribosomal protein S29 OS=Morus notabilis OX=981085 GN=L484_003677 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 120 FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Sbjct: 46  FSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 80

[Close]

BLAST of Clc10G09795 vs. ExPASy TrEMBL
Match: A0A2K3NDK7 (40S ribosomal protein s29-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024420 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.0e-12
Identity = 56/141 (39.72%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 14  ASRSWGTPTSGTLILRTMALVLGLGKQISSHSSAFLMNHESGTLVFFSVCPYPSLLRKLN 73
           +++ W T TSGTL  R M LVL L K +  H +  L    +  LV         +++  +
Sbjct: 27  SNKPWDTLTSGTLTPRPMVLVLALAKLVHFHGNCTLTVRGTAVLVL-------QVVKSTD 86

Query: 74  FNNFFLSVVLFGCFLLLFTLHCVLFGYFIHQLNVSYRNNNNNFFLSFSRVCGNPHGLIRK 133
            NN   +  L G                    +V YR+   +      RVCGN HGLIRK
Sbjct: 87  NNN---NEDLAG------------------NCSVVYRSLLPSETPISFRVCGNSHGLIRK 139

Query: 134 YGLMCCRQCFRSNAKEIGFIK 155
           YGLMCCRQCF SNAKEIGFIK
Sbjct: 147 YGLMCCRQCFHSNAKEIGFIK 139

[Close]

BLAST of Clc10G09795 vs. ExPASy TrEMBL
Match: A0A0A0KV31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000930 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.0e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 157
           RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Sbjct: 22  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 56

[Close]

BLAST of Clc10G09795 vs. ExPASy TrEMBL
Match: A0A7J8VWD8 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_003124 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.0e-12
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 118 LSFSRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 157
           L FSRVCGNPH +IRKYGLMCCRQCFRSNAKEIGFIK S
Sbjct: 20  LLFSRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFIKVS 58

[Close]

BLAST of Clc10G09795 vs. TAIR 10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-13
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 122 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 22  RVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of Clc10G09795 vs. TAIR 10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-13
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 122 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 22  RVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of Clc10G09795 vs. TAIR 10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-13
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 122 RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 155
           RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 22  RVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

The following BLAST results are available for this feature:

BLAST of Clc10G09795 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF2309651.1	7.6e-13	77.36	hypothetical protein GH714_004459 [Hevea brasiliensis]	[more]
KAG6749024.1	1.7e-12	89.74	hypothetical protein POTOM_046066 [Populus tomentosa]	[more]
KAG6747635.1	6.4e-12	91.89	hypothetical protein POTOM_047525 [Populus tomentosa]	[more]
EXB80035.1	6.4e-12	100.00	40S ribosomal protein S29 [Morus notabilis]	[more]
PNY01132.1	8.4e-12	39.72	40S ribosomal protein s29-like, partial [Trifolium pratense]	[more]

BLAST of Clc10G09795 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680P8	6.6e-12	93.94	40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2	[more]
Q5I7K3	8.7e-12	90.91	40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1	[more]
P62276	3.4e-08	78.79	40S ribosomal protein S29 OS=Bos taurus OX=9913 GN=RPS29 PE=3 SV=2	[more]
P62273	3.4e-08	78.79	40S ribosomal protein S29 OS=Homo sapiens OX=9606 GN=RPS29 PE=1 SV=2	[more]
P62274	3.4e-08	78.79	40S ribosomal protein S29 OS=Mus musculus OX=10090 GN=Rps29 PE=1 SV=2	[more]

BLAST of Clc10G09795 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A6M7F0	3.7e-13	77.36	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004459 PE=3 SV=1	[more]
W9RIN5	3.1e-12	100.00	40S ribosomal protein S29 OS=Morus notabilis OX=981085 GN=L484_003677 PE=3 SV=1	[more]
A0A2K3NDK7	4.0e-12	39.72	40S ribosomal protein s29-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195...	[more]
A0A0A0KV31	4.0e-12	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000930 PE=3 SV=1	[more]
A0A7J8VWD8	4.0e-12	89.74	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_003124 PE=3...	[more]

BLAST of Clc10G09795 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G43980.1	4.7e-13	93.94	Ribosomal protein S14p/S29e family protein	[more]
AT3G44010.1	4.7e-13	93.94	Ribosomal protein S14p/S29e family protein	[more]
AT4G33865.1	4.7e-13	93.94	Ribosomal protein S14p/S29e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 122..156 e-value: 1.8E-11 score: 43.6
IPR043140	Ribosomal protein S14/S29	GENE3D	4.10.830.10	30s Ribosomal Protein S14; Chain N	coord: 106..155 e-value: 4.7E-20 score: 73.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR12010:SF13	40S RIBOSOMAL PROTEIN S29	coord: 120..155
IPR039744	40S ribosomal protein S29/30S ribosomal protein S14 type Z	PANTHER	PTHR12010	40S RIBOSOMAL PROTEIN S29	coord: 120..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G09795.1	Clc10G09795.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008270	zinc ion binding