Clc10G09730 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G09730
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr10: 21955042 .. 21955479 (+)
RNA-Seq Expression	Clc10G09730
Synteny	Clc10G09730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTTCTTAATGTGTTAAAGTATGAAAATGGATAAATTTTCATTGGCTCAAAATTTCATTGATTGGCTGCTACTTTCTCCTATAAATACAAGGCTTGAGAAAGCAACTATATAAAAACCATAAGAATTAGTTGGGAAAGGGAAAAATAGATATGGAGATGAAAAACAAGATTGCTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCAATCCGCCACCACCATCGCCGCCGTGGATGAGGCAATTCAGCTCCCGGCTGACGGCGGAGCAAACACACCGAGAGTGTGTCCTGCTACACTTTTGCCTTGCAAAACTAACTCTGAGTGCTCTCCATGCATCTGTGTTAATGGCGCTTGCATTTGAAAAACAAAAACAAGATGAAGAACAGTTGTTCCCGTCAATATCTATTCAACTATGGTCTTTTTTTTGGTAC

mRNA sequence

TCTTTTCTTAATGTGTTAAAGTATGAAAATGGATAAATTTTCATTGGCTCAAAATTTCATTGATTGGCTGCTACTTTCTCCTATAAATACAAGGCTTGAGAAAGCAACTATATAAAAACCATAAGAATTAGTTGGGAAAGGGAAAAATAGATATGGAGATGAAAAACAAGATTGCTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCAATCCGCCACCACCATCGCCGCCGTGGATGAGGCAATTCAGCTCCCGGCTGACGGCGGAGCAAACACACCGAGAGTGTGTCCTGCTACACTTTTGCCTTGCAAAACTAACTCTGAGTGCTCTCCATGCATCTGTGTTAATGGCGCTTGCATTTGAAAAACAAAAACAAGATGAAGAACAGTTGTTCCCGTCAATATCTATTCAACTATGGTCTTTTTTTTGGTAC

Coding sequence (CDS)

ATGGAGATGAAAAACAAGATTGCTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCAATCCGCCACCACCATCGCCGCCGTGGATGAGGCAATTCAGCTCCCGGCTGACGGCGGAGCAAACACACCGAGAGTGTGTCCTGCTACACTTTTGCCTTGCAAAACTAACTCTGAGTGCTCTCCATGCATCTGTGTTAATGGCGCTTGCATTTGA

Protein sequence

MEMKNKIALVAMVVVMVVMAQSATTIAAVDEAIQLPADGGANTPRVCPATLLPCKTNSECSPCICVNGACI

Homology

[Close]

BLAST of Clc10G09730 vs. NCBI nr
Match: KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MEMKNKIALVAMVVVMVVMAQSATTIAAVDEAIQLPADGGAN------TPRVCPATLLPC 60
          MEMKNK+ALVAMVVVMVVM +SAT  AA+DE I+LP +G A+       PRVCP  +LPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTNSECSPCICVNGACI 72
          KT+SECSPC C NG+CI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of Clc10G09730 vs. NCBI nr
Match: KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MEMKNKIALVAMVVVMVVMAQSATTIAAVDEAIQLPADGGANTPRVCPATLLPCKTNSEC 60
          MEMKNK ALVAMVV MVVMAQS TTI A DE I+L   GG NT RVCPAT+LPCKT+SEC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGGENTARVCPATILPCKTDSEC 60

Query: 61 SPCIC--VNGACI 72
          SPCIC   +G+CI
Sbjct: 61 SPCICNLQSGSCI 70

[Close]

BLAST of Clc10G09730 vs. NCBI nr
Match: KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MEMKNKIALVAMVVVMVVMAQSATTIAAVDEAIQLPADGGANTPRVCPATLLPCKTNSEC 60
          MEMKNK ALVAMVV MVVMAQS TTI A DE I+L   GG NT RVCPATLLPC+T+SEC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGGENTARVCPATLLPCETDSEC 60

Query: 61 SPCIC--VNGACI 72
          SPCIC   +GAC+
Sbjct: 61 SPCICNVKSGACV 70

[Close]

BLAST of Clc10G09730 vs. NCBI nr
Match: TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MEMKNKIALVAMVVVMVVMAQSATTIAAVDEAIQLPADGGANTPRVCPATLLPCKTNSEC 60
          MEMKNK ALVAMVV MVVMAQS TTI A DE I++   GG NT RVCPAT+LPCKT+SEC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEV--SGGENTARVCPATILPCKTDSEC 60

Query: 61 SPCIC--VNGACI 72
          SPCIC   +G+CI
Sbjct: 61 SPCICNLQSGSCI 70

[Close]

BLAST of Clc10G09730 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.1e-16
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MEMKNKIALVAMVVVMVVMAQSATTIAAVDEAIQLPADGGAN------TPRVCPATLLPC 60
          MEMKNK+ALVAMVVVMVVM +SAT  AA+DE I+LP +G A+       PRVCP  +LPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTNSECSPCICVNGACI 72
          KT+SECSPC C NG+CI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of Clc10G09730 vs. ExPASy TrEMBL
Match: A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.8e-15
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MEMKNKIALVAMVVVMVVMAQSATTIAAVDEAIQLPADGGANTPRVCPATLLPCKTNSEC 60
          MEMKNK ALVAMVV MVVMAQS TTI A DE I+L   GG NT RVCPAT+LPCKT+SEC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGGENTARVCPATILPCKTDSEC 60

Query: 61 SPCIC--VNGACI 72
          SPCIC   +G+CI
Sbjct: 61 SPCICNLQSGSCI 70

[Close]

BLAST of Clc10G09730 vs. ExPASy TrEMBL
Match: A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.8e-15
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MEMKNKIALVAMVVVMVVMAQSATTIAAVDEAIQLPADGGANTPRVCPATLLPCKTNSEC 60
          MEMKNK ALVAMVV MVVMAQS TTI A DE I+L   GG NT RVCPATLLPC+T+SEC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGGENTARVCPATLLPCETDSEC 60

Query: 61 SPCIC--VNGACI 72
          SPCIC   +GAC+
Sbjct: 61 SPCICNVKSGACV 70

[Close]

BLAST of Clc10G09730 vs. ExPASy TrEMBL
Match: A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MEMKNKIALVAMVVVMVVMAQSATTIAAVDEAIQLPADGGANTPRVCPATLLPCKTNSEC 60
          MEMKNK ALVAMVV MVVMAQS TTI A DE I++   GG NT RVCPAT+LPCKT+SEC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEV--SGGENTARVCPATILPCKTDSEC 60

Query: 61 SPCIC--VNGACI 72
          SPCIC   +G+CI
Sbjct: 61 SPCICNLQSGSCI 70

The following BLAST results are available for this feature:

BLAST of Clc10G09730 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52766.1	1.3e-15	66.23	hypothetical protein Csa_015422 [Cucumis sativus]	[more]
KAA0044341.1	1.4e-14	73.97	hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa]	[more]
KGN52767.1	1.4e-14	73.97	hypothetical protein Csa_015168 [Cucumis sativus]	[more]
TYK29470.1	3.1e-14	72.60	hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa]	[more]

BLAST of Clc10G09730 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G09730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY39	6.1e-16	66.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1	[more]
A0A5A7TRY5	6.8e-15	73.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KWE9	6.8e-15	73.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1	[more]
A0A5D3E1Q5	1.5e-14	72.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc10G09730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G09730.1	Clc10G09730.1	mRNA