Clc10G09530 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G09530
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotransposon protein
Location	ClcChr10: 21626448 .. 21628352 (+)
RNA-Seq Expression	Clc10G09530
Synteny	Clc10G09530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAGGTCAACTGGTTGTTTGGAACCAACTAGATGTTTGGACGTGGAAGAGATGGTTGCGATATTCCTACACATTCTTGCACACAATGTTAAGAATCAAGTGATACACATAAACTTTTCGAGGTCTAACGAGACTGTTTTGAGATATTTCAACACAGTTCTTAGAGCAGTCTTTCAAATTTGCACCGCTTTATTGAAAAAACTAGAACCAATCACAAGTACATGCATTGATGGATGATGGAAATGGTTTCAAGTACAAAAAGTACTCAATTTTTTTATATGAATATGTCATAAGTATGCATGCAATGATAGATATTTTTTTAATTTATTATGATCACTTGAGGAGAACAGAATTGTCTAGGTGCGTCAGATGACACATACATTAAAGTGAATGTTAGTGCATTCGATCCACCTGGATATAGGACGAGAAATAGAGAGATCACCATAAACGTTCTTGCGATCTGTAACCAAAATGGGGAGTTCGTCTTCGTTCTGCTAGGGTGGGAAGAGTCTGCAGCTAATTCAAGGGTTTTTAGGGATGCAATTTTGCGATCGTACAGATTGAGGGTTCTGAAGGGTATTATAATGAACGTATACGTTATTTAAACATGTGTGAATGCCACAACACCTATGCATGATATTTCAAAACGTGTATAAGATACTATTACCTGCGTAATGTTGGATACCGTAACACTGAAGGAATCTTGGCTCAGTATAGAGGGGAATGATACTATCTCTTAGATTGGTGTGGAGCAGGAAACGCACTGACAATTGCAAGCGAATTTTTCAACATGAAATATTCTTCAGCAAGGAATATTATTGAGCGGGCATTTAGGTTGCTCAAGGGGTGATGGGATATTCTTAGGGGCAAATCATTCTACCCAATACAAGTCCAATGTCGAACAATAACTACATGTTGCCTTATTCACAACTTGATCACAAGGGAGATAGGAATCGATGTAATGCTTGATGTGCCTGTTGAGGAGAATTCTGCATTAGTTGGTCTTGATGAGGATCATAATGAATTTGTTGAATCCTCGAAGGAATAGACCAAGTTTAGGGTTGACTTGGCAGTCAAAATCTTTACTCAATGGCAGGGAGCCTGATTATTCATTGCTTACTTTTGTTTAAGTATTGAATGGAATTTAATTATGGAACATTTTAAGTATGTTGTGAACATGTTTTGTGTCCAGACTGTATGTGAACATGTTAAATTGGAACATATAATTTCAGCAGTATATCCTTCGTTTGTGCATGTGTTTAATTTAGAACATCTTTTCATTCAACAAATGTATGCATGCAGCATAATGACATTTAATGGTAGGAGATCTAAACACGTATGGTCGAAGGTGGAGAACGCTAAGTTGGTGGAAGGCTTATTGTACTTGGTGGAAACCGGTTGAAGGTCCAACAATGGAACGTTTGAACCAGGATACCTACATCACTCGGAGCGAATTCTACATGAGAAAGTGCCCAGGTGCACACTAAACCAGAACACCATTGAGTGCAAGGTGAGGAGTTTGAAGAAACAATACAACACAGTATCATAGATGTTAAGTCAGTCGGGGTTCAAATGAAATGAGGAGTTCAAATGTGTCCAAGTGGAGAGAGATTTTCGATCTTTGGGTTTGGGTAAGATTCTAAAAAAAGAATAAAAAAGGAACTAGTACATGTTATCATATGATTATTAATAATGTTTATGTGTATTAATGCAGAGTCATCCCACTGCGAAGGAAATGTGGAACAAGTCATTCTCTCTACCGTATTTGGGAAAGACAGAGCAGTAGGACAATCAAGTGAGGCCCTGCACGTGATGGCAATGAATGCATTTAGAGAGTTTGAAGATGAGATTCAGCTTGGATCACAGGAATATCACACACATGAGGTTCGCGAGACAGAATAA

mRNA sequence

ATGCTAAGGTCAACTGGTTGTTTGGAACCAACTAGATGTTTGGACGTGGAAGAGATGGTTGCGATATTCCTACACATTCTTGCACACAATGTTAAGAATCAAGTGATACACATAAACTTTTCGAGGTCTAACGAGACTGTTTTGAGATATTTCAACACAGTTCTTAGAGCAGTCTTTCAAATTTGCACCGCTTTATTGAAAAAACTAGAACCAATCACAAGTGCGTCAGATGACACATACATTAAAGTGAATGTTAGTGCATTCGATCCACCTGGATATAGGACGAGAAATAGAGAGATCACCATAAACGTTCTTGCGATCTGTAACCAAAATGGGGAGTTCGTCTTCGTTCTGCTAGGGTGGGAAGAGTCTGCAGCTAATTCAAGGGTTTTTAGGGATGCAATTTTGCGATCGTACAGATTGAGGGTTCTGAAGGGAGATCTAAACACGTATGGTCGAAGGTGGAGAACGCTAAGTTGGTGGAAGGCTTATTGTACTTGGTGGAAACCGGTTGAAGGTCCAACAATGGAACGTTTGAACCAGGATACCTACATCACTCGGAGCGAATTCTACATGAGAAAGTGCCCAGAGTCATCCCACTGCGAAGGAAATGTGGAACAAGTCATTCTCTCTACCGTATTTGGGAAAGACAGAGCAGTAGGACAATCAAGTGAGGCCCTGCACGTGATGGCAATGAATGCATTTAGAGAGTTTGAAGATGAGATTCAGCTTGGATCACAGGAATATCACACACATGAGGTTCGCGAGACAGAATAA

Coding sequence (CDS)

ATGCTAAGGTCAACTGGTTGTTTGGAACCAACTAGATGTTTGGACGTGGAAGAGATGGTTGCGATATTCCTACACATTCTTGCACACAATGTTAAGAATCAAGTGATACACATAAACTTTTCGAGGTCTAACGAGACTGTTTTGAGATATTTCAACACAGTTCTTAGAGCAGTCTTTCAAATTTGCACCGCTTTATTGAAAAAACTAGAACCAATCACAAGTGCGTCAGATGACACATACATTAAAGTGAATGTTAGTGCATTCGATCCACCTGGATATAGGACGAGAAATAGAGAGATCACCATAAACGTTCTTGCGATCTGTAACCAAAATGGGGAGTTCGTCTTCGTTCTGCTAGGGTGGGAAGAGTCTGCAGCTAATTCAAGGGTTTTTAGGGATGCAATTTTGCGATCGTACAGATTGAGGGTTCTGAAGGGAGATCTAAACACGTATGGTCGAAGGTGGAGAACGCTAAGTTGGTGGAAGGCTTATTGTACTTGGTGGAAACCGGTTGAAGGTCCAACAATGGAACGTTTGAACCAGGATACCTACATCACTCGGAGCGAATTCTACATGAGAAAGTGCCCAGAGTCATCCCACTGCGAAGGAAATGTGGAACAAGTCATTCTCTCTACCGTATTTGGGAAAGACAGAGCAGTAGGACAATCAAGTGAGGCCCTGCACGTGATGGCAATGAATGCATTTAGAGAGTTTGAAGATGAGATTCAGCTTGGATCACAGGAATATCACACACATGAGGTTCGCGAGACAGAATAA

Protein sequence

MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQICTALLKKLEPITSASDDTYIKVNVSAFDPPGYRTRNREITINVLAICNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKGDLNTYGRRWRTLSWWKAYCTWWKPVEGPTMERLNQDTYITRSEFYMRKCPESSHCEGNVEQVILSTVFGKDRAVGQSSEALHVMAMNAFREFEDEIQLGSQEYHTHEVRETE

Homology

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BLAST of Clc10G09530 vs. NCBI nr
Match: XP_038875111.1 (uncharacterized protein LOC120067643 [Benincasa hispida])

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-34
Identity = 89/161 (55.28%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           MLR+     PT+C+D++EMVAIFLHIL H+VKN+V+   F+ S ETV R+F  VL  V Q
Sbjct: 12  MLRTISRSAPTQCIDMQEMVAIFLHILVHDVKNRVVGRKFAWSGETVSRHFRFVLTVVLQ 71

Query: 61  ICTALLKKLEPITS---------------ASDDTYIKVNVSAFDPPGYRTRNREITINVL 120
           +   LLKK EPITS               A DDTYIKVNVSA D   YRTR  EI  NVL
Sbjct: 72  LHELLLKKPEPITSDCTDSKWKWFENCLGALDDTYIKVNVSAVDRTHYRTRKGEIATNVL 131

Query: 121 AICNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKG 147
           AIC+   EF+FVL  WE S ANSRV RDAI R + L+V KG
Sbjct: 132 AICSPTAEFIFVLPRWERSVANSRVLRDAISRPHGLKVSKG 172

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BLAST of Clc10G09530 vs. NCBI nr
Match: TYK08067.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-34
Identity = 83/148 (56.08%), Postives = 108/148 (72.97%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           MLR+ G LE T+ +DVEEM AIFLHI+AH+VKN+V   +F+RS+ TV R+FN VL AV +
Sbjct: 12  MLRTRGGLEATQYVDVEEMTAIFLHIVAHDVKNRVARRHFARSDATVSRHFNVVLNAVLR 71

Query: 61  ICTALLKKLEPIT--SASDDTYIKVNVSAFDPPGYRTRNREITINVLAICNQNGEFVFVL 120
           I   LLK+ + +T   A D T+IKVNVS  D P YR+R  +IT NVL +C+QNGEF+FV+
Sbjct: 72  IHEILLKQPDQVTHSCALDGTHIKVNVSMSDHPRYRSRKSDITTNVLGLCSQNGEFIFVM 131

Query: 121 LGWEESAANSRVFRDAILRSYRLRVLKG 147
            GWE SA++SRV RD + R   L+V KG
Sbjct: 132 PGWEGSASDSRVLRDVVSRPIGLKVPKG 159

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BLAST of Clc10G09530 vs. NCBI nr
Match: KAA0050107.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-34
Identity = 85/161 (52.80%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           MLR+ G LE T+ +DVEEMVAIFLHI+AH+VKN+V   +F+RS ETV R+FN VL AV +
Sbjct: 12  MLRTKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLR 71

Query: 61  ICTALLKKLEPIT---------------SASDDTYIKVNVSAFDPPGYRTRNREITINVL 120
           +   LLK+ +P+T                A   T+IKVNVS  D P YR+R  +IT NVL
Sbjct: 72  LHEILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVL 131

Query: 121 AICNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKG 147
            +C+QNGEF+FV+ GWE SA++SRV RDA+ R   L+V KG
Sbjct: 132 GVCSQNGEFIFVMPGWEGSASDSRVLRDAVSRPTSLKVPKG 172

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BLAST of Clc10G09530 vs. NCBI nr
Match: XP_008455792.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 4.4e-34
Identity = 87/161 (54.04%), Postives = 106/161 (65.84%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           +LR+T  L  T  +DVEEMVA+FLHILAH+VKN++I   F RS ETV R+FN VL A F+
Sbjct: 12  LLRTTAGLVETEVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNIVLLAGFR 71

Query: 61  ICTALLKKLEPITS---------------ASDDTYIKVNVSAFDPPGYRTRNREITINVL 120
           +   LLKK +P+T+               A D TYIKVNVSA D P YRTR  E+  NVL
Sbjct: 72  LHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYRTRKGEVATNVL 131

Query: 121 AICNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKG 147
             C+  G+FVFVL GWE SAA+SR+ RDAI R   L+V KG
Sbjct: 132 GACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKG 172

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BLAST of Clc10G09530 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-33
Identity = 85/161 (52.80%), Postives = 107/161 (66.46%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           +LR+T  L  T  +DVEEMVA+FLHILAH++KN++I   F RS ETV R+FN VL +V +
Sbjct: 12  LLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSRHFNLVLLSVLR 71

Query: 61  ICTALLKKLEPITS---------------ASDDTYIKVNVSAFDPPGYRTRNREITINVL 120
           +   LLKK + +T+               A DDTYIKVNVSA D P Y TR  E+ INVL
Sbjct: 72  LHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYSTRKGEVAINVL 131

Query: 121 AICNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKG 147
            +C+  G+FVFVL GWE SAA+SR+ RDAI R   L+V KG
Sbjct: 132 GVCDTKGDFVFVLSGWEGSAADSRILRDAISRHNGLKVPKG 172

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BLAST of Clc10G09530 vs. ExPASy TrEMBL
Match: A0A5D3C7X6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002160 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.6e-35
Identity = 83/148 (56.08%), Postives = 108/148 (72.97%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           MLR+ G LE T+ +DVEEM AIFLHI+AH+VKN+V   +F+RS+ TV R+FN VL AV +
Sbjct: 12  MLRTRGGLEATQYVDVEEMTAIFLHIVAHDVKNRVARRHFARSDATVSRHFNVVLNAVLR 71

Query: 61  ICTALLKKLEPIT--SASDDTYIKVNVSAFDPPGYRTRNREITINVLAICNQNGEFVFVL 120
           I   LLK+ + +T   A D T+IKVNVS  D P YR+R  +IT NVL +C+QNGEF+FV+
Sbjct: 72  IHEILLKQPDQVTHSCALDGTHIKVNVSMSDHPRYRSRKSDITTNVLGLCSQNGEFIFVM 131

Query: 121 LGWEESAANSRVFRDAILRSYRLRVLKG 147
            GWE SA++SRV RD + R   L+V KG
Sbjct: 132 PGWEGSASDSRVLRDVVSRPIGLKVPKG 159

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BLAST of Clc10G09530 vs. ExPASy TrEMBL
Match: A0A5A7U6W3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001210 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-34
Identity = 85/161 (52.80%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           MLR+ G LE T+ +DVEEMVAIFLHI+AH+VKN+V   +F+RS ETV R+FN VL AV +
Sbjct: 12  MLRTKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLR 71

Query: 61  ICTALLKKLEPIT---------------SASDDTYIKVNVSAFDPPGYRTRNREITINVL 120
           +   LLK+ +P+T                A   T+IKVNVS  D P YR+R  +IT NVL
Sbjct: 72  LHEILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVL 131

Query: 121 AICNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKG 147
            +C+QNGEF+FV+ GWE SA++SRV RDA+ R   L+V KG
Sbjct: 132 GVCSQNGEFIFVMPGWEGSASDSRVLRDAVSRPTSLKVPKG 172

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BLAST of Clc10G09530 vs. ExPASy TrEMBL
Match: A0A1S3C1U8 (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-34
Identity = 87/161 (54.04%), Postives = 106/161 (65.84%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           +LR+T  L  T  +DVEEMVA+FLHILAH+VKN++I   F RS ETV R+FN VL A F+
Sbjct: 12  LLRTTAGLVETEVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNIVLLAGFR 71

Query: 61  ICTALLKKLEPITS---------------ASDDTYIKVNVSAFDPPGYRTRNREITINVL 120
           +   LLKK +P+T+               A D TYIKVNVSA D P YRTR  E+  NVL
Sbjct: 72  LHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYRTRKGEVATNVL 131

Query: 121 AICNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKG 147
             C+  G+FVFVL GWE SAA+SR+ RDAI R   L+V KG
Sbjct: 132 GACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKG 172

[Close]

BLAST of Clc10G09530 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.1e-34
Identity = 85/161 (52.80%), Postives = 107/161 (66.46%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           +LR+T  L  T  +DVEEMVA+FLHILAH++KN++I   F RS ETV R+FN VL +V +
Sbjct: 12  LLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSRHFNLVLLSVLR 71

Query: 61  ICTALLKKLEPITS---------------ASDDTYIKVNVSAFDPPGYRTRNREITINVL 120
           +   LLKK + +T+               A DDTYIKVNVSA D P Y TR  E+ INVL
Sbjct: 72  LHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYSTRKGEVAINVL 131

Query: 121 AICNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKG 147
            +C+  G+FVFVL GWE SAA+SR+ RDAI R   L+V KG
Sbjct: 132 GVCDTKGDFVFVLSGWEGSAADSRILRDAISRHNGLKVPKG 172

[Close]

BLAST of Clc10G09530 vs. ExPASy TrEMBL
Match: A0A5D3BXH4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00290 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-33
Identity = 87/173 (50.29%), Postives = 109/173 (63.01%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           +L +T  L     +DVEEMVA+FLHIL H+VKN++I   F RS ETV R+FN VL A  +
Sbjct: 12  LLWTTAGLVGIEVIDVEEMVAMFLHILTHDVKNRMIQRQFVRSGETVSRHFNLVLLATLR 71

Query: 61  ICTALLKKLEPITS---------------ASDDTYIKVNVSAFDPPGYRTRNREITINVL 120
           +   LLKKL+P+T+               A DDTYIKVNVSA D P Y+TR  E+  NVL
Sbjct: 72  LHDELLKKLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYKTRKGEVATNVL 131

Query: 121 AICNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKGDLNTYGRRWRTL 159
            +C+  G+FVFVL GWE SAA+SR+ RDAI R   L+V KG       RW+ L
Sbjct: 132 GVCDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKG-------RWKIL 177

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BLAST of Clc10G09530 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-15
Identity = 52/159 (32.70%), Postives = 80/159 (50.31%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQ 60
           +L++ G L  T  + +E  +AIFL I+ HN++ + +   F  S ET+ R+FN VL AV  
Sbjct: 59  LLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIA 118

Query: 61  ICTALLK-KLEPITSASDDTYIK------------VNVSAFDPPGYRTRNREITINVLAI 120
           I     +      T  +DD Y K            V V   +   +R  N  +T NVLA 
Sbjct: 119 ISKDFFQPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAA 178

Query: 121 CNQNGEFVFVLLGWEESAANSRVFRDAILRSYRLRVLKG 147
            + +  F +VL GWE SA++ +V   A+ R  +L+V +G
Sbjct: 179 SSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQG 217

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BLAST of Clc10G09530 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 63  TALLKKLEPITSASDDTYIKVNVSAFDPPGYRTRNREITINVLAICNQNGEFVFVLLGWE 122
           T L    +    A DDT+I   VS    P +R R  +I+ N+LA CN + EF++VL GWE
Sbjct: 16  TRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWE 75

Query: 123 ESAANSRVFRDAILR-SYRLRVLKGD 148
            SA +S+V  DA+ R S RL V + D
Sbjct: 76  GSAHDSKVLNDALTRNSNRLPVPEED 101

[Close]

BLAST of Clc10G09530 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-07
Identity = 41/156 (26.28%), Postives = 65/156 (41.67%), Query Frame = 0


Query: 1   MLRSTGCLEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAV-- 60
           ML++   L+PT  + +EE VA+FL I  HN   + + + F R+ ETV R F  VL A   
Sbjct: 83  MLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTATEL 142

Query: 61  --------------------FQICTALLKKLEPITSASDDTYIKVNVSAFDPPGYRTRNR 120
                                Q+             A D T++ V V       Y  R+ 
Sbjct: 143 LACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHD 202

Query: 121 EITINVLAICNQNGEFVFVLLGWEESAANSRVFRDA 135
             ++N++AIC+    F ++  G   S  ++ V + A
Sbjct: 203 NASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIA 238

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BLAST of Clc10G09530 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 3.5e-05
Identity = 40/134 (29.85%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 8   LEPTRCLDVEEMVAIFLHILAHNVKNQVIHINFSRSNETVLRYFNTVLRAVFQICTALL- 67
           L+ +  + ++E VAIFL I A N   + I + F  + ET+ R F+ VL+A+ ++    + 
Sbjct: 48  LQSSTNISLDESVAIFLIICASNDTQRDIALRFGHAQETIWRKFHDVLKAMERLAVEYIR 107

Query: 68  -KKLEPITSAS----DDTYIKVNVSAFDPPGYRTRNREITINVLAICNQNGEFVFVLLGW 127
            +K+E + + S    DDT  +      D  G        + NVLAIC+ +  F +  +G 
Sbjct: 108 PRKVEELRAISNRLQDDT--RYWPFLMDLLGI------ASFNVLAICDLDMLFTYCFVGM 167

Query: 128 EESAANSRVFRDAI 136
             S  ++RV   AI
Sbjct: 168 AGSTHDARVLSAAI 173

The following BLAST results are available for this feature:

BLAST of Clc10G09530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875111.1	1.2e-34	55.28	uncharacterized protein LOC120067643 [Benincasa hispida]	[more]
TYK08067.1	2.0e-34	56.08	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050107.1	2.6e-34	52.80	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
XP_008455792.1	4.4e-34	54.04	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
KAA0033290.1	1.7e-33	52.80	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]

BLAST of Clc10G09530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G09530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7X6	9.6e-35	56.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U6W3	1.3e-34	52.80	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3C1U8	2.1e-34	54.04	putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1	[more]
A0A5A7SQU2	8.1e-34	52.80	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BXH4	1.1e-33	50.29	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Clc10G09530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	6.4e-15	32.70	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	3.6e-10	43.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G43722.1	3.8e-07	26.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	3.5e-05	29.85	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..161
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G09530.1	Clc10G09530.1	mRNA