Clc10G06540 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G06540
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type domain-containing protein
Location	ClcChr10: 8919044 .. 8919731 (-)
RNA-Seq Expression	Clc10G06540
Synteny	Clc10G06540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAAAACCAAAATTATGCTTCATGGCTTTTTCAGCTTCTTCACACAAAAACCCTAAAAACTTTGCTCAAATTTAAAAAATAAAACCAATTAAAAAAGAGAGAAAGAAACTCATAACATGATCCCTCAAGCTCTTAGTGTTCCACAATCCAACCCTCCTCCTTCAATCCTCCCTTTCCTCACTGCGTTTTCGATCATAATCGTTGTCTTCATCTCCATCATCGTCTTCTCCGTCGTCGCGTCCTTTGCAATCATCATCTTCATCTATATCATTTGCCAATACCTAATTGGGCCAACGAATTTAGACGGACACAGTTCCGACCTCGAAGTGGGTGAGAGAAACGAAAACCAAAGGATGATCACACGGAGTAGGATTTTGGTATCTCATCATCAAATAAGTACTCAAGGGAGAGACATGGAGAGGTCTGAAAGCAACGCATGGAGGGAGGCTTTGGAGAGAACAATAATGGTAGAGAAAGTGGCGGAGCCGGTGAGCTATGGGAGCTCCGAGGCGGTGGCGAAATGCATTGATTGTGCAATCTGTTTGGAGGATTTTGAAAATGGAGAGCTTTGTCAGATTTTTCCAGTGTGTAATCACATTTTTCATTATTCTTGTATTCAACATTGGTTGAAAAAGAACATGACTTGTCCCATTTGTCGTTGTTCTATTGTCAATGAGAAGTTCTGA

mRNA sequence

TAATAAAACCAAAATTATGCTTCATGGCTTTTTCAGCTTCTTCACACAAAAACCCTAAAAACTTTGCTCAAATTTAAAAAATAAAACCAATTAAAAAAGAGAGAAAGAAACTCATAACATGATCCCTCAAGCTCTTAGTGTTCCACAATCCAACCCTCCTCCTTCAATCCTCCCTTTCCTCACTGCGTTTTCGATCATAATCGTTGTCTTCATCTCCATCATCGTCTTCTCCGTCGTCGCGTCCTTTGCAATCATCATCTTCATCTATATCATTTGCCAATACCTAATTGGGCCAACGAATTTAGACGGACACAGTTCCGACCTCGAAGTGGGTGAGAGAAACGAAAACCAAAGGATGATCACACGGAGTAGGATTTTGGTATCTCATCATCAAATAAGTACTCAAGGGAGAGACATGGAGAGGTCTGAAAGCAACGCATGGAGGGAGGCTTTGGAGAGAACAATAATGGTAGAGAAAGTGGCGGAGCCGGTGAGCTATGGGAGCTCCGAGGCGGTGGCGAAATGCATTGATTGTGCAATCTGTTTGGAGGATTTTGAAAATGGAGAGCTTTGTCAGATTTTTCCAGTGTGTAATCACATTTTTCATTATTCTTGTATTCAACATTGGTTGAAAAAGAACATGACTTGTCCCATTTGTCGTTGTTCTATTGTCAATGAGAAGTTCTGA

Coding sequence (CDS)

ATGATCCCTCAAGCTCTTAGTGTTCCACAATCCAACCCTCCTCCTTCAATCCTCCCTTTCCTCACTGCGTTTTCGATCATAATCGTTGTCTTCATCTCCATCATCGTCTTCTCCGTCGTCGCGTCCTTTGCAATCATCATCTTCATCTATATCATTTGCCAATACCTAATTGGGCCAACGAATTTAGACGGACACAGTTCCGACCTCGAAGTGGGTGAGAGAAACGAAAACCAAAGGATGATCACACGGAGTAGGATTTTGGTATCTCATCATCAAATAAGTACTCAAGGGAGAGACATGGAGAGGTCTGAAAGCAACGCATGGAGGGAGGCTTTGGAGAGAACAATAATGGTAGAGAAAGTGGCGGAGCCGGTGAGCTATGGGAGCTCCGAGGCGGTGGCGAAATGCATTGATTGTGCAATCTGTTTGGAGGATTTTGAAAATGGAGAGCTTTGTCAGATTTTTCCAGTGTGTAATCACATTTTTCATTATTCTTGTATTCAACATTGGTTGAAAAAGAACATGACTTGTCCCATTTGTCGTTGTTCTATTGTCAATGAGAAGTTCTGA

Protein sequence

MIPQALSVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPTNLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRDMERSESNAWREALERTIMVEKVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIVNEKF

Homology

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BLAST of Clc10G06540 vs. NCBI nr
Match: KAA0060638.1 (putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa])

HSP 1 Score: 324.7 bits (831), Expect = 5.3e-85
Identity = 163/189 (86.24%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MIPQALSVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFSI+IV+FISII+FSVVASFAIIIFIYIIC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRD-MERSESNAWREALERTIMVE 120
           +LD H SDLE GE NENQRMI RSRIL++HHQ S+ GRD MERSESN WRE +ERTIM+E
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPI 180
           KVA PVSYGSSE VAKCIDCAICLEDFENGELCQ FPVCNHIFHYSCIQHWLKKNMTCPI
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180

Query: 181 CRCSIVNEK 189
           CRCSIVN+K
Sbjct: 181 CRCSIVNDK 189

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BLAST of Clc10G06540 vs. NCBI nr
Match: TYK02232.1 (putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 2.5e-63
Identity = 133/158 (84.18%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MIPQALSVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFSI+IV+FISII+FSVVASFAIIIFIYIIC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRD-MERSESNAWREALERTIMVE 120
           +LD H SDLE GE NENQRMI RSRIL++HHQ S+ GRD MERSESN WRE +ERTIM+E
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPV 158
           KVA PVSYGSSE VAKCIDCAICLEDFENGELCQ FPV
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPV 158

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BLAST of Clc10G06540 vs. NCBI nr
Match: XP_011652743.1 (uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical protein Csa_011552 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 4.3e-63
Identity = 145/268 (54.10%), Postives = 164/268 (61.19%), Query Frame = 0


Query: 1   MIPQALSVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFSI+IV+FI+II+FSVVASFAII+ IY+IC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  NLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRD-MERSESNAWREALERTIMVE 120
           +LDGHSS+LE GE NENQ MITRSRIL++HHQ S+ GRD MERSESNAWRE +ERTIM+E
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120

Query: 121 KVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQ-------------------------- 180
           KVA PVSYGSSEA  KCIDCAICLEDFENGELCQ                          
Sbjct: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPGFSESEQRGNRNEEMTMTTTTVA 180

Query: 181 ---------------------------------------------------------IFP 185
                                                                    +FP
Sbjct: 181 TTMVADPEERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFP 240

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BLAST of Clc10G06540 vs. NCBI nr
Match: ADN33914.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 251.5 bits (641), Expect = 5.7e-63
Identity = 132/158 (83.54%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MIPQALSVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFSI+IV+FISII+FSVVASFAIIIFIYIIC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRD-MERSESNAWREALERTIMVE 120
           +LD H SDLE GE NENQRMI RSRIL++HHQ S+ GRD MERSESN WRE +ERTIM+E
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPV 158
           KVA PVSYGSSE VAKCIDCAICLEDFENGELCQ FP+
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPL 158

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BLAST of Clc10G06540 vs. NCBI nr
Match: KAG6600727.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.1 bits (588), Expect = 7.9e-57
Identity = 125/196 (63.78%), Postives = 144/196 (73.47%), Query Frame = 0


Query: 1   MIPQAL-SVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGP 60
           MIPQAL +VPQSNPPPS LPFLTAFSI+IV+ ISI++FS++ASF+IIIFI+++CQYLIG 
Sbjct: 1   MIPQALTTVPQSNPPPSTLPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60

Query: 61  TNLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRDMERSESNAWREALERTI--- 120
           TNLDGH  D+E GERN+NQ    R R LVS            R ESN WREALERT+   
Sbjct: 61  TNLDGHHLDVEAGERNQNQNQTMRGRSLVS------------RYESNIWREALERTMAER 120

Query: 121 ------MVEKVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHW 180
                 +V K+A  V YG SE  AK  DCAICLE+FENGE CQIF VC HIFHYSCIQ W
Sbjct: 121 KGRRAQIVMKMATRVRYGCSEVAAKYTDCAICLEEFENGEDCQIFVVCKHIFHYSCIQRW 180

Query: 181 LKKNMTCPICRCSIVN 187
           L++NMTCPICR  I N
Sbjct: 181 LRRNMTCPICRSPIAN 184

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BLAST of Clc10G06540 vs. ExPASy Swiss-Prot
Match: Q9C919 (Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-12
Identity = 51/175 (29.14%), Postives = 93/175 (53.14%), Query Frame = 0


Query: 11  SNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPTNLDGHSSDLE 70
           S+     +  ++   + + + + I++  ++A+ A+I+ IY+I   ++ P        DLE
Sbjct: 2   SSEEDDAISLISVLGLAVFIGLCILLVVLIATSALILVIYVIIDCILRPFLGTCLDLDLE 61

Query: 71  VGERNENQRMITRSRILVSHHQISTQGR--DMER-SESNAWREALERTIMVEKVAEPVSY 130
           +G +   Q    R+RI+  H  IST  R  D ER  +    ++++  T++ + +    ++
Sbjct: 62  IGVQRGQQ----RARIVTYHTIISTGLRLPDFEREGKKRGLKQSVIETLLPKLLVGQGNH 121

Query: 131 GSSEAVA-KCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICR 182
              E  + +  +CAICL  +   E C++FPVC HI+H  CI  WLK ++TCP CR
Sbjct: 122 EEDEEKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCR 172

[Close]

BLAST of Clc10G06540 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-11
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 127 YGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 186
           YGS E      +CAICL +F +GE  ++ P CNH FH SCI  WL  + +CP CR S++
Sbjct: 93  YGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of Clc10G06540 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 127 YGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIVN 186
           YGS     K  +C ICL DFE+GE  ++ P CNH FH  CI  WL    +CP CR S++ 
Sbjct: 102 YGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLL 161

Query: 187 EK 189
           E+
Sbjct: 162 EQ 163

[Close]

BLAST of Clc10G06540 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-10
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 126 SYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSI 185
           S   S+  +K ++CAICL + E+ E  ++ P+CNH+FH  CI  WL  + TCP+CR ++
Sbjct: 111 SVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 169

[Close]

BLAST of Clc10G06540 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-10
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 132 AVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 186
           + A C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +I+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

[Close]

BLAST of Clc10G06540 vs. ExPASy TrEMBL
Match: A0A5A7UZF7 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005240 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.5e-85
Identity = 163/189 (86.24%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MIPQALSVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFSI+IV+FISII+FSVVASFAIIIFIYIIC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRD-MERSESNAWREALERTIMVE 120
           +LD H SDLE GE NENQRMI RSRIL++HHQ S+ GRD MERSESN WRE +ERTIM+E
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPI 180
           KVA PVSYGSSE VAKCIDCAICLEDFENGELCQ FPVCNHIFHYSCIQHWLKKNMTCPI
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180

Query: 181 CRCSIVNEK 189
           CRCSIVN+K
Sbjct: 181 CRCSIVNDK 189

[Close]

BLAST of Clc10G06540 vs. ExPASy TrEMBL
Match: A0A0A0L6M6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.2e-84
Identity = 159/188 (84.57%), Postives = 175/188 (93.09%), Query Frame = 0


Query: 1   MIPQALSVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFSI+IV+FI+II+FSVVASFAII+ IY+IC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  NLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRD-MERSESNAWREALERTIMVE 120
           +LDGHSS+LE GE NENQ MITRSRIL++HHQ S+ GRD MERSESNAWRE +ERTIM+E
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120

Query: 121 KVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPI 180
           KVA PVSYGSSEA  KCIDCAICLEDFENGELCQ FPVCNHIFHYSCIQHWLKKNMTCPI
Sbjct: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180

Query: 181 CRCSIVNE 188
           CRCSIVN+
Sbjct: 181 CRCSIVND 188

[Close]

BLAST of Clc10G06540 vs. ExPASy TrEMBL
Match: A0A5D3BTV2 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00260 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.2e-63
Identity = 133/158 (84.18%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MIPQALSVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFSI+IV+FISII+FSVVASFAIIIFIYIIC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRD-MERSESNAWREALERTIMVE 120
           +LD H SDLE GE NENQRMI RSRIL++HHQ S+ GRD MERSESN WRE +ERTIM+E
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPV 158
           KVA PVSYGSSE VAKCIDCAICLEDFENGELCQ FPV
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPV 158

[Close]

BLAST of Clc10G06540 vs. ExPASy TrEMBL
Match: E5GBS2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.7e-63
Identity = 132/158 (83.54%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MIPQALSVPQSNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFSI+IV+FISII+FSVVASFAIIIFIYIIC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGHSSDLEVGERNENQRMITRSRILVSHHQISTQGRD-MERSESNAWREALERTIMVE 120
           +LD H SDLE GE NENQRMI RSRIL++HHQ S+ GRD MERSESN WRE +ERTIM+E
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPV 158
           KVA PVSYGSSE VAKCIDCAICLEDFENGELCQ FP+
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPL 158

[Close]

BLAST of Clc10G06540 vs. ExPASy TrEMBL
Match: A0A7N2L6L4 (RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.9e-22
Identity = 74/188 (39.36%), Postives = 105/188 (55.85%), Query Frame = 0


Query: 1   MIPQALSVPQSNPPP--SILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIG 60
           M+PQA   P   PPP   IL F+    I I+ ++ IIV SVV    I++ I  IC     
Sbjct: 4   MVPQAFVPPHPMPPPLHPILSFIAIVCIAILFYVVIIVVSVVVPLFILLVIADICDLFCM 63

Query: 61  PTNLDGHSSDLEVGERNENQ-RMITRSRILVSHHQISTQGRDMERSESNAWREALERTIM 120
           P+N +    DLE GER  +Q   I  S   + + +I    + +  +     +   E+   
Sbjct: 64  PSN-ESPVRDLEEGERIAHQPEDIPYSSCFILNIRIWASLKMLIEAVIEVSKR--EKQQA 123

Query: 121 VEKVAEPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTC 180
           +EK+   V+YGS E  + C  C ICLEDF+NG+ CQ+FP CNH+FH +CI +WLKK+ TC
Sbjct: 124 LEKLPPLVNYGSKEIASTCTVCVICLEDFKNGQSCQVFPSCNHVFHSNCIGYWLKKSPTC 183

Query: 181 PICRCSIV 186
           PICR  ++
Sbjct: 184 PICRVPVM 188

[Close]

BLAST of Clc10G06540 vs. TAIR 10
Match: AT1G53010.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-13
Identity = 51/175 (29.14%), Postives = 93/175 (53.14%), Query Frame = 0


Query: 11  SNPPPSILPFLTAFSIIIVVFISIIVFSVVASFAIIIFIYIICQYLIGPTNLDGHSSDLE 70
           S+     +  ++   + + + + I++  ++A+ A+I+ IY+I   ++ P        DLE
Sbjct: 2   SSEEDDAISLISVLGLAVFIGLCILLVVLIATSALILVIYVIIDCILRPFLGTCLDLDLE 61

Query: 71  VGERNENQRMITRSRILVSHHQISTQGR--DMER-SESNAWREALERTIMVEKVAEPVSY 130
           +G +   Q    R+RI+  H  IST  R  D ER  +    ++++  T++ + +    ++
Sbjct: 62  IGVQRGQQ----RARIVTYHTIISTGLRLPDFEREGKKRGLKQSVIETLLPKLLVGQGNH 121

Query: 131 GSSEAVA-KCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICR 182
              E  + +  +CAICL  +   E C++FPVC HI+H  CI  WLK ++TCP CR
Sbjct: 122 EEDEEKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCR 172

[Close]

BLAST of Clc10G06540 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 127 YGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 186
           YGS E      +CAICL +F +GE  ++ P CNH FH SCI  WL  + +CP CR S++
Sbjct: 93  YGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

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BLAST of Clc10G06540 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-12
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 127 YGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIVN 186
           YGS     K  +C ICL DFE+GE  ++ P CNH FH  CI  WL    +CP CR S++ 
Sbjct: 102 YGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLL 161

Query: 187 EK 189
           E+
Sbjct: 162 EQ 163

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BLAST of Clc10G06540 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 126 SYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSI 185
           S   S+  +K ++CAICL + E+ E  ++ P+CNH+FH  CI  WL  + TCP+CR ++
Sbjct: 111 SVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 169

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BLAST of Clc10G06540 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 132 AVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 186
           + A C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +I+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

The following BLAST results are available for this feature:

BLAST of Clc10G06540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060638.1	5.3e-85	86.24	putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]	[more]
TYK02232.1	2.5e-63	84.18	putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]	[more]
XP_011652743.1	4.3e-63	54.10	uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical ...	[more]
ADN33914.1	5.7e-63	83.54	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAG6600727.1	7.9e-57	63.78	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Clc10G06540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C919	4.7e-12	29.14	Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 P...	[more]
Q9LZV8	5.2e-11	47.46	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9SG96	1.2e-10	46.77	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q8W571	2.0e-10	42.37	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q67YI6	2.6e-10	44.44	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]

BLAST of Clc10G06540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZF7	2.5e-85	86.24	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0L6M6	8.2e-84	84.57	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 P...	[more]
A0A5D3BTV2	1.2e-63	84.18	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
E5GBS2	2.7e-63	83.54	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A7N2L6L4	8.9e-22	39.36	RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Clc10G06540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53010.1	3.4e-13	29.14	RING/U-box superfamily protein	[more]
AT5G01880.1	3.7e-12	47.46	RING/U-box superfamily protein	[more]
AT3G10910.1	8.3e-12	46.77	RING/U-box superfamily protein	[more]
AT4G40070.1	1.4e-11	42.37	RING/U-box superfamily protein	[more]
AT3G18930.1	1.8e-11	44.44	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 139..180 e-value: 8.6E-7 score: 38.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 138..181 e-value: 1.4E-13 score: 50.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 139..181 score: 13.064645
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 118..187 e-value: 9.8E-19 score: 68.4
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 14..184
None	No IPR available	PANTHER	PTHR45798:SF72	ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED	coord: 14..184
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 138..181 e-value: 9.85019E-16 score: 65.7861
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 138..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G06540.1	Clc10G06540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane