Clc10G06020 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G06020
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L24
Location	ClcChr10: 7925328 .. 7932097 (+)
RNA-Seq Expression	Clc10G06020
Synteny	Clc10G06020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCTCCTCCCTCTCACTAGCCTAAGAGGGACTTTGTTTATGGTAGGACCATAATGTTGGACCGGTATGGCAACCCTAGAGGGGGGTGAATAGGGTTTAATTAAACTTATTCCTAAATATGCTCAAATTAAACTAATTGAATTATTTTTTTTGAATTAAATTAATAAAAACCTTAATTGATGCTAAATATCAAGATTGATAAAAAATATATGAAACACAAGATTCAATCAATCTCAACAAAGAAGGATAGTAATCTATAACATGCTACTAAAAATTGAATGCAAAATAAATTGAGAAAGAGTTGGAGAAGAAGACACCGTGATTTTTATAGTGGTTCGATCCAACTCAACCTACATCCACTTTCCCAAGCGCCTCTTGGGATTTCGATTAAAAAATCTTCTTTGACTCTTTCCACGGATGAGAGTCGAACCGCTACCTTGCTCCTTTTTCGGGTTCAAGAGCAAACCCGATCCTTTCCACGGGTTAGGATCCAACCGTTACAATATTCTTGAAATTTTAAATCACACACTAAAATTCTCTAAAAAAGAGTAGATGTACAAATTTGAACTCACAATACTCAATCCTCACAATACAATGAAAGTATCTCTTTAGAATAAGATGGAAAGAAAGAAATTTGAAAGCTTGGAGAGAGAGCAACAATGGTGACCTTTTTCAATTTTTGAGGATTGTAAAATTGTAAAAGTTGGAGAAAACTTTTTGGAGAAGATGAAATATTTAAAAACAAATGAAAGTGAGTGAAAACCAAATTAATTTGGACCATTAGATCTTTGTAAAAGAAAATTGAATGGTGGAGATTTAAACTCAACTAGCCGTTAGACACAAACATATAATAATATTAAATTAATCCTTTTAAAAAAGCCAACTAGCCGTTAGACACAAATATATATAATATTAAATTAATCCTTTTAAAAAATCAACTAGCCGTTAGACACAAACATATATAATAATATTAAATTTATTTTCTTTTTAAATTCATTTTCTTTTTTTTTTTTAAATCATTTTCTTTTTAACATCAATCCAAAAATAAAAGACCCATCAATTGTCACTTCTCCATTGCTCCAAGTGGCACCTTTCAATTTGTCCACTTTGATTAAAAAAAAATCTACCATGTCATCAGCTCGAGATTTTTCCATTAAGCTTGTTTCAGTCATATCTTCTTCATTTGAACTTCGATTTGAGTGATTCAAATTGCATTGGAACCATTGTTCCAAGCTCCACACAATAGACAATTCAAAACACTCAAATGTTTAATAAATAAAATCAGGTTTGTTATCATCAAAACACTAATTAATCAATCCATTAAAATTAATTAATTTGAGATTAAGGGCCAAAAAGCCAACACATAAATAGATTGTTCATTAGAAGATCTGTGAAACTTAAAGAGGAAGACATAATTATAGGAGTAAAATGGTAATTTGATCCAACTGTAATTACGAACAACTCATGAAAGATTGACTTACTTGTAATAGTTATATTCATGGAGACAAAACTTTCTACCGTGCATAAAAGTGCAACTATGAGTTTTTAGTAGGGTGATCCATAGTTAATGAGGGATTAATCTAATTAAGGAGTCTAATTAATTAATCTCGTATTATTGGAGTTTATAATTTGTAGGTTTATTAAGTCCCCTGCTAGCTCAAAAATGGGTAAAACAAAAATGGGAAAAACGAGGATCAAAGAGTTTTTGAAAAAATTTTAAAGGTTAAAATTGTATAATAGAATATATGTTAATTGTATATAATACAATTAATATAATGTGTTTAAATACATTATAATATAGAGTTTATTTTGAATAAGATTTAAATTAAACTATATAATATGAGAATATAAATGTATTTGAATAAGATTGAAATAATAAATTAGTATGAATGAAATTCATATTTTAAAACTATAGGTTTAAATTAACATGAATAAGATTTACAATAGGTTAGGAAAGAGACGTAAATTTGAATATGATTCAAATATACGTTCAATTAGTTCTAAAAAAAAGTTTTAATTAAAAATAAGATATTGAATTAAATAAATATATAAATAATTATTTAATTAATTTAATATAATATCAAATTAAATATGTTAAAATCCCTGGCATTGCAGGAGAGTGGGGAGTTGCAGGAGAGTACCCCTACTCTCGCTTTAAAATGCTATTCTTCTAGCATTTTTGGGTCACTATTTTTTTACATGAAATCAAACTCTTCTCTCTCTCAACTTCTCTAATAATTACAAAACAAAGAAAATTCCCTCAAAACTTCCTTGTATCTTTTAAATAGCCACAAACTATCTTTGCCAGAGAATAGTGAGGAAGATTTGATTAGAGGTGTCCCAACTTGTTACGAGATTCATACATTGAGAAGAGGAAAAGAATTATTGTTGCAAATTAAAGAAGTGTCTTCAATCATAAGTTATTTTTCTCTACTTAATATACTATATGTTATGCTGTGATTTAATTCTAAAACAAAATCAATAGCTATCGTTATCCAAATTGGTCATTGAAGATCCGATCTTGTTACGAGATCACACACTTCTGCTTGAGATTTAATCCCTTCATAAACCTACTGGTACCGAAATCGGTCATTGAAGGTCTTCCCATTGGTATACTTGCTTCCATTTGGTGACCGTATCAAGGTCATGGATGTTGTCGTTCAAGGTGGGAAGCAATGGTACAATTGTTGAAGGTTGGAAGGGAAGAAAATTGTCCTATTTTGGAGAATTTTGAAATGCAAACCATTTAAGAAATCATACAACCACAGTAATTTTATGACTAATTTTTTTTCTTATTTTGAAATTTGAATGAATATGAATTGAATTGGAATGGTAACCAAATTTTTGTGTAATTAATGCTAATTCAAATCTCTAAATAATGCTAACTCTTCACCATATTGTTGATCGCCAGTCATGTCACTCGCCAATCACCGGTTGCCATTGTCGATAAGTTTCTATGTGATTTTCTCTCTCAACTCTCTCTCCCTCTCTCTCTTTTTTGTGCCCCCGAACTTAAGGTGATACATAAGAGAGCCCTAATTAAATTAAGATCCATTTAATTACAAAATTGGCACAAGTCTTAAATAATTAGTCATTTTCAACCGTGTATCAATAGTATATCAAACGTTTATTAATAGCGTATCGAGTGTGTATCAAGTGTATTAGGTGTATATTAGTAGTGCATCAAGTGTATAAGGTGTATATCAATATTATATCTTTTATTTTTTGAAAATAGTATATTAGTAGTATATTAAGTGTATATCATTAGTGTATCAAGACTATCACTTGGGTTGGACTTCTTTTTGGGTAATTGTAACGAATGGATAATAACCAAGTGTATAGCAACATTTTTAAAAAATTGCAAATATAGCAAAATTATATCGATAGATTTTGCTATATTTGCAATTTTTTAAAAATTGTTGTTATATAGGTTAATACTTTAAATCTGATTGATATATTTGTAACTATCTCTTTTTTCTTGCTATTTTTACAAAAATAATAAATCGGAACTATAGGTCTAACTTTTAAAATTTATTTTGTCAAATTTAGGACACAACCTTTTATATATATATAAAAGTACACTCGATTTGATTCGAATTCTTCTAACTCTTGAATGGGAATCGAACCGAATTGTTCGGTTTGTCTGCCAGATAACCTACGGTCCCTTTTTTTTTTTTTTTTTTTTCTTTTCTTCTAGAAGAAATCAGTCCGAACCAGCTTATTCGGTTGGTTCGACCCAGTTTGCCGGTTTTGTCCAAAATTAACACCCGATATTGGGAAAACGTTGTCGTTTAGAGCGCAACTGCACCTCTTTCTATCCGTGTTCGCTATTTTGCATTCTGCAATTGCTTATCCATTTGTGAAGCTCCCCAATACTTTCTTCAGAGACAAGCCTGCAGCAGCAAAAATGGCGGCCATGGCTGCGCTTCAGAGCTCTATGACCGCTCTTTCCCTCTCTTCCAATTCCTTCCTCGGCCAACGCCTTCCGCCGCCCACAATTTACGCTGCTCCCGTACGATTTTCTACTCTTCCCTTCGTTTCCAATTGCTTTCTCATTATGCTTCATTTACCCACTTTTCCCTTCGATTTGCCTCTCAATTTGATTTTTATGAGAAATTATGCTTCAAAATGTAGAGCTGCTTCCCTTGTTGGGTGAACTGTAGAGTGAAATTTAGCCAATAGATGATCTTCTTAGCTCTGTTAATCGTTTTTGCCTGTGATTTAATTTCATTTTTGCTCTCTAAATTATTCGTTCAACTCGCATTCGGAGCAGTATCCTTCAATTTTCCCCAACATTGAGCATCGAGCTTTGCTTTCCAACTTGTACATTGTTTGGGGACTAGGGGCGCAGTGGTGTTGATGATGATTTGATTTATTGTGTCTGATTTTCTCCCCTGAAATTATATCTTTACCGTTTCATTTGGCAACAACCATAGTCTTTAGTTTCTCATTCATTTAATCTTTTCTTTTCCTTTCTTGTTTTTGTTTTCTATCAGTTATTTAGCATTGTGATATTGTTTTATATAATATCTGTAAGTAGTTAGTAGCCCTATTCAAATGAAACTACATTTCCACAGCATTCCAAAGAAGTATTAGGATAATGTTGCAGGCAACCAATGTTCAAGAATAGATCAAATACAAAAAATTCGTCAAATTTTACTGATTTTCCCCATAACCATTGAAATTATAAACTACTTCCCATCCCACACTTGCTATAGGTTTCAAGCTAACAAATTACATCAGTTATTGTTTATATTTGAGCTTATTTGCACTATATCTTGTTGAAGTAATTTGCAGGGTAGTTTGTATCTAAGTATCTCTTGTTTAACTTGCAGGTAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAGGGTTAGTATTCTTCTTTTCATGATTTCTCATAGTAATGAGGGTTAGTATTCTTGCCTTTTCATGATTTCTCATAGTAATGAGGGTTAGTATTCTTGCCTTTTCATGATTTCGTCCTTTTCCAGCTCATTTAAATTTAATGGAAGATAAAGTATGTTCGAACATGATATGTGGGGGAAAATAAATGAAGATGTGAAACAGGAATAAGTTGGATGGTTAACTTGCGGAGCAAAATGACATACCTGCTGCTACCTTGTGATATGATAATGTATTGTGATCGAATTACTTTGGAAGTCCCTTCCAATAACCATCGTTTAATGCAAGTATAAGCAATTTTCCTTTCAAGAGGCTAATTTAGAAGATTTTCAATGCAGTTGTAGCTATTTGATGAAGCACTATCAAAAGCTTTTTTGATCGTGCTTCTAAATTGTAGCCAAACATACACTTTTGACATAGAAGTTTTCTTCACCATTAGAAAACTCTTGTCATAGTTAAAAGCACCCCAAGCAATCTTTAAGTATACCTCCAAGTATTAGTAGAGTGTTCCACTCAAAATACCATCTCTAAAAGTCACTCCAAATACACCCAAGTATTAGTTGTAGGTTTTATAATTATGTTATAGTTGTTCTTAAGGCTTCTTTCCAGGAATGGTCATTAAAATTTTCTCTATTCTAAATGAACTCGGCCACAAAAGTAAAAGTTTATAATGATATATTTGGGGTTTCTGTTCTTGCATTTCTTCTCTTTGGCATGAGATCAACATTGTGAAGGAAATATTGGCAACTCTACTGTTTTCCCATATATTTACTTACATTTTTCTTCTTACATACTGGCAGCTTAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCAGTACTACACAAAATGCATGTCAAGGTTGGAGACACAGTGAAAGTTATAGCTGGCCGTGATAAGGGAAAAATTGGAGAAATCACCAAAATTTTCAAACATAATAGCAAAGTGATAGTGAACGAAATAAATCTAAAAACAAAGCATGTAAAGAGCAGAGAGGAGGAAGAACAAGGACAGATTATTAAGGTTTGTTTCTGTTCTTTGTAACAAATTCAAATCATCAACTATTGTCTATACAGAATGAAACGTTCTCCAATCGTCAGTTTATCATCAACCAGCAAACTTTTAGACACTCCCATCCTTGTGTCTTGAAGTGATTACTTTAGTGTGAACTGGATTCTATATATGTTTGTTTATATTATATCTTCATTGTCTCATGTTTAACAGATTAGTTTGACCTCATAGGCTAATTTCTTGTTTCTTGATTCTGATATTTCAGATTGAAGCACCGATCCACAGCTCCAATGTGATGCTTTACTCAAAAGAACAGAATGTAGCAAGCCGGGTGGGTCACAAAACCCTTGAAAATGGAAAACGAGTACGTTACCTGATAAAAACTGGGGAAATAATTGACAACATTGAAAATTGGAAGAAACAGAAGGAAGAGAAGAGCAAAACTGAAGTGGCTACAACTGCCTAAGTAGCGTTTTTCAACTGTACCTACCACTGATGTAGTTATGTATCTTGAAGGGTAATTCAGTAGCCCATTGTTGCGGTCTTTTTGGTTACAGCATAGTAAAATGATATTGTTTTGGTAGTTTATTGTTTATCTATAATCTCTTCAAGGGTGGGTGTTTGGGCAGGTGTAATGGGTTGGGATTCTAGACCCATGTTTGGTTTGTTGGGTTTGAAGTTGGTTTGGAATCCTCAACCCATTTCAACCCAGATTCATTACAATTCAACCACTCCACTACATGCCACATTCTTTTGCAACCATATTTCTCTCCACTCCTTTCAAACTCATTGATTCTCTTCTCACCTATCGTCTTTCTCCCTCTTCCATCTTAATTATTTT

mRNA sequence

ATGGGGCTCCTCCCTCTCACTAGCCTAAGAGGGACTTTGTTTATGGTCTTCCCATTGGTATACTTGCTTCCATTTGGTGACCGTATCAAGGTCATGGATGTTGTCGTTCAAGGTGGGAAGCAATGTCATGTCACTCGCCAATCACCGGTTGCCATTGTCGATAAGTTTCTATGTGATTTTCTCTCTCAACTCTCTCTCCCTCTCTCTCTTTTTTGTGCCCCCGAACTTAAGAAGAAATCAGTCCGAACCAGCTTATTCGGTTGGTTCGACCCAGTTTGCCGGTTTTGTCCAAAATTAACACCCGATATTGGGAAAACGTTGTCGTTTAGAGCGCAACTGCACCTCTTTCTATCCGTGTTCGCTATTTTGCATTCTGCAATTGCTTATCCATTTGTGAAGCTCCCCAATACTTTCTTCAGAGACAAGCCTGCAGCAGCAAAAATGGCGGCCATGGCTGCGCTTCAGAGCTCTATGACCGCTCTTTCCCTCTCTTCCAATTCCTTCCTCGGCCAACGCCTTCCGCCGCCCACAATTTACGCTGCTCCCGTAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAGGCTTAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCAGTACTACACAAAATGCATGTCAAGGTTGGAGACACAGTGAAAGTTATAGCTGGCCGTGATAAGGGAAAAATTGGAGAAATCACCAAAATTTTCAAACATAATAGCAAAGTGATAGTGAACGAAATAAATCTAAAAACAAAGCATGTAAAGAGCAGAGAGGAGGAAGAACAAGGACAGATTATTAAGATTGAAGCACCGATCCACAGCTCCAATGTGATGCTTTACTCAAAAGAACAGAATGTAGCAAGCCGGGTGGGTCACAAAACCCTTGAAAATGGAAAACGAGTACGTTACCTGATAAAAACTGGGGAAATAATTGACAACATTGAAAATTGGAAGAAACAGAAGGAAGAGAAGAGCAAAACTGAAGTGGCTACAACTGCCTAAGTAGCGTTTTTCAACTGTACCTACCACTGATGTAGTTATGTATCTTGAAGGGTAATTCAGTAGCCCATTGTTGCGGTCTTTTTGGTTACAGCATAGTAAAATGATATTGTTTTGGTAGTTTATTGTTTATCTATAATCTCTTCAAGGGTGGGTGTTTGGGCAGGTGTAATGGGTTGGGATTCTAGACCCATGTTTGGTTTGTTGGGTTTGAAGTTGGTTTGGAATCCTCAACCCATTTCAACCCAGATTCATTACAATTCAACCACTCCACTACATGCCACATTCTTTTGCAACCATATTTCTCTCCACTCCTTTCAAACTCATTGATTCTCTTCTCACCTATCGTCTTTCTCCCTCTTCCATCTTAATTATTTT

Coding sequence (CDS)

ATGGGGCTCCTCCCTCTCACTAGCCTAAGAGGGACTTTGTTTATGGTCTTCCCATTGGTATACTTGCTTCCATTTGGTGACCGTATCAAGGTCATGGATGTTGTCGTTCAAGGTGGGAAGCAATGTCATGTCACTCGCCAATCACCGGTTGCCATTGTCGATAAGTTTCTATGTGATTTTCTCTCTCAACTCTCTCTCCCTCTCTCTCTTTTTTGTGCCCCCGAACTTAAGAAGAAATCAGTCCGAACCAGCTTATTCGGTTGGTTCGACCCAGTTTGCCGGTTTTGTCCAAAATTAACACCCGATATTGGGAAAACGTTGTCGTTTAGAGCGCAACTGCACCTCTTTCTATCCGTGTTCGCTATTTTGCATTCTGCAATTGCTTATCCATTTGTGAAGCTCCCCAATACTTTCTTCAGAGACAAGCCTGCAGCAGCAAAAATGGCGGCCATGGCTGCGCTTCAGAGCTCTATGACCGCTCTTTCCCTCTCTTCCAATTCCTTCCTCGGCCAACGCCTTCCGCCGCCCACAATTTACGCTGCTCCCGTAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAGGCTTAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCAGTACTACACAAAATGCATGTCAAGGTTGGAGACACAGTGAAAGTTATAGCTGGCCGTGATAAGGGAAAAATTGGAGAAATCACCAAAATTTTCAAACATAATAGCAAAGTGATAGTGAACGAAATAAATCTAAAAACAAAGCATGTAAAGAGCAGAGAGGAGGAAGAACAAGGACAGATTATTAAGATTGAAGCACCGATCCACAGCTCCAATGTGATGCTTTACTCAAAAGAACAGAATGTAGCAAGCCGGGTGGGTCACAAAACCCTTGAAAATGGAAAACGAGTACGTTACCTGATAAAAACTGGGGAAATAATTGACAACATTGAAAATTGGAAGAAACAGAAGGAAGAGAAGAGCAAAACTGAAGTGGCTACAACTGCCTAA

Protein sequence

MGLLPLTSLRGTLFMVFPLVYLLPFGDRIKVMDVVVQGGKQCHVTRQSPVAIVDKFLCDFLSQLSLPLSLFCAPELKKKSVRTSLFGWFDPVCRFCPKLTPDIGKTLSFRAQLHLFLSVFAILHSAIAYPFVKLPNTFFRDKPAAAKMAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKEEKSKTEVATTA

Homology

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BLAST of Clc10G06020 vs. NCBI nr
Match: XP_038903308.1 (50S ribosomal protein L24, chloroplastic [Benincasa hispida])

HSP 1 Score: 361.3 bits (926), Expect = 9.1e-96
Identity = 187/191 (97.91%), Postives = 189/191 (98.95%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKE 327
           GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIID++ENWKK KE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDSVENWKKLKE 180

Query: 328 EKSKTEVATTA 339
           E SKTEVATTA
Sbjct: 181 ENSKTEVATTA 191

[Close]

BLAST of Clc10G06020 vs. NCBI nr
Match: KAG6577405.1 (50S ribosomal protein L24, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.3 bits (900), Expect = 9.4e-93
Identity = 189/228 (82.89%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 111 AQLHLFLSVFAILHSAIAYPFVKLPNTFFRDKPAAAKMAAMAALQSSMTALSLSSNSFLG 170
           AQ HL LSV     SAIA    K       D+ AA  MAAM +LQSSMTALSLSS+SFLG
Sbjct: 29  AQRHLLLSV----QSAIALSICKAHPILLSDESAAETMAAMVSLQSSMTALSLSSSSFLG 88

Query: 171 QRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRD 230
           QRL P TI+AAPVTSKEKPCLIVM+LKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRD
Sbjct: 89  QRLQPSTIFAAPVTSKEKPCLIVMKLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRD 148

Query: 231 KGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQGQIIKIEAPIHSSNVMLYSKEQN 290
           KGKIGEITKIFKHNSKV V EINLKTKHVKSREEEEQGQIIK+EAPIHSSNVMLYSKE++
Sbjct: 149 KGKIGEITKIFKHNSKVTVKEINLKTKHVKSREEEEQGQIIKVEAPIHSSNVMLYSKEKD 208

Query: 291 VASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKEEKSKTEVATTA 339
           VASRVGHKTLENGKRVRYLIKTGEIID+ +NWKK KEEKSKTEVA+TA
Sbjct: 209 VASRVGHKTLENGKRVRYLIKTGEIIDSTDNWKKLKEEKSKTEVASTA 252

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BLAST of Clc10G06020 vs. NCBI nr
Match: XP_008452322.1 (PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo] >KAA0046925.1 50S ribosomal protein L24 [Cucumis melo var. makuwa] >TYK03227.1 50S ribosomal protein L24 [Cucumis melo var. makuwa])

HSP 1 Score: 349.4 bits (895), Expect = 3.6e-92
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAMAALQSSMTALSLSSNSFLGQRLPPP IYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+VNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKE 327
           GQIIKIEAPIHSSNVMLYSKEQNV SRVGHK LE+GKRVRYLIKTGEIID+ ENWKK KE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 328 EKSKTEVATTA 339
            KSKTEVATTA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of Clc10G06020 vs. NCBI nr
Match: XP_022142723.1 (50S ribosomal protein L24, chloroplastic [Momordica charantia])

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-91
Identity = 181/191 (94.76%), Postives = 186/191 (97.38%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAMAALQSSMT+LSLSSNSFLGQRLP PTIYAAPVTSKEKPCLIVMRLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIV EINLKTKHVKSREEEE+
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKE 327
           GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLE+G+RVRYLIKTGEIID+ ENWKK KE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180

Query: 328 EKSKTEVATTA 339
           EKSKTEVA TA
Sbjct: 181 EKSKTEVAATA 191

[Close]

BLAST of Clc10G06020 vs. NCBI nr
Match: XP_004149305.1 (50S ribosomal protein L24, chloroplastic [Cucumis sativus] >XP_031739317.1 50S ribosomal protein L24, chloroplastic [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 8.8e-91
Identity = 176/191 (92.15%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLPV+HKMHVK+GDTVKVIAGRDKGKIGEITKIFKHNSKV+VNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKE 327
           GQIIKIEAPIHSSNVMLYSKEQ+V SRVGHK LE+GKRVRYLIKTGEIID+ ENWKK KE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 328 EKSKTEVATTA 339
             SK EVATTA
Sbjct: 181 ANSKAEVATTA 191

[Close]

BLAST of Clc10G06020 vs. ExPASy Swiss-Prot
Match: P11893 (50S ribosomal protein L24, chloroplastic OS=Pisum sativum OX=3888 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.1e-71
Identity = 147/193 (76.17%), Postives = 162/193 (83.94%), Query Frame = 0


Query: 150 AMAALQSSMTALSLSSNSFLGQRLPP----PTIYAAPVTSKEKPCLIVMRLKRWERKECK 209
           AMA+LQSSM++LSLSSNSFLGQ L P    P +   P    EK CLIVM+LKRWERKECK
Sbjct: 5   AMASLQSSMSSLSLSSNSFLGQPLSPITLSPFLQGKPT---EKKCLIVMKLKRWERKECK 64

Query: 210 PNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEE 269
           PNSLPVLHK+HVKVGDTVKVI+G +KG+IGEITKIFKHNS VIV +INLKTKHVKS +E 
Sbjct: 65  PNSLPVLHKLHVKVGDTVKVISGHEKGQIGEITKIFKHNSSVIVKDINLKTKHVKSNQEG 124

Query: 270 EQGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQ 329
           E GQI K+EAPIHSSNVMLYSKE++V SRVGHK LENGKRVRYLIKTGEIID+ ENWKK 
Sbjct: 125 EPGQINKVEAPIHSSNVMLYSKEKDVTSRVGHKVLENGKRVRYLIKTGEIIDSEENWKKL 184

Query: 330 KEEKSKT-EVATT 338
           KE   KT EVA T
Sbjct: 185 KEANKKTAEVAAT 194

[Close]

BLAST of Clc10G06020 vs. ExPASy Swiss-Prot
Match: Q02764 (50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL24 PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 6.1e-71
Identity = 139/188 (73.94%), Postives = 153/188 (81.38%), Query Frame = 0


Query: 151 MAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPNSLP 210
           MAALQSS   L   S SF GQR  PP      V S E PCLI  +LKRWERKECKPNSLP
Sbjct: 1   MAALQSSFAGL---STSFFGQRFSPPLSLPPLVKSTEGPCLIQAKLKRWERKECKPNSLP 60

Query: 211 VLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQGQI 270
           VLHKMHVK+GDTVK+I+G DKGK+GEIT+I KHNSKV+V ++NLKTKHVKSR E+E GQI
Sbjct: 61  VLHKMHVKLGDTVKIISGHDKGKVGEITEIIKHNSKVVVKDVNLKTKHVKSRSEDEPGQI 120

Query: 271 IKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKEEKS 330
           +KIEAPIHSSNVMLYSKEQ VASRVGHKTL+NGKRVRYLIKTGEIID+ ENWKK  +EK 
Sbjct: 121 VKIEAPIHSSNVMLYSKEQKVASRVGHKTLDNGKRVRYLIKTGEIIDSAENWKKAVKEKE 180

Query: 331 KTEVATTA 339
           KT  A  A
Sbjct: 181 KTTEAVAA 185

[Close]

BLAST of Clc10G06020 vs. ExPASy Swiss-Prot
Match: P27683 (50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL24 PE=1 SV=2)

HSP 1 Score: 266.5 bits (680), Expect = 4.0e-70
Identity = 141/192 (73.44%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAMAALQSS T+LSLSSNSFLGQRL P        T    PCLIVMR+KRWERK+CKPN
Sbjct: 1   MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLP LHKMHVKVGDTVKVI+G +KGKIGEI+KI KHNS VI+ ++NLKTKHVKS+EE EQ
Sbjct: 61  SLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQ 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKK-QK 327
           GQIIKIEA IHSSNVMLYSKEQ VASRVGHK LE+G++VRYLIKTGEI+D  + WK+ Q 
Sbjct: 121 GQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQN 180

Query: 328 EEKSKTEVATTA 339
           +++S+T VA  A
Sbjct: 181 KKESETAVAVAA 192

[Close]

BLAST of Clc10G06020 vs. ExPASy Swiss-Prot
Match: P92959 (50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL24 PE=2 SV=2)

HSP 1 Score: 265.0 bits (676), Expect = 1.2e-69
Identity = 138/196 (70.41%), Postives = 164/196 (83.67%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLS-SNSFLGQRLPPPTIYA--APVTSKEKPCLIVMRLKRWERKEC 207
           MA M+ALQSS T+LSLS S+SFLGQRL  P   +  +PV   E PCL++ +LKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 208 KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREE 267
           KPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +++ ++NLKTKH+KSREE
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120

Query: 268 EEQGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKK 327
            E GQI+KIEAPIHSSNVMLYSKE++V SRVGHK LE+G++VRYLIKTGE+ID IE WK 
Sbjct: 121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180

Query: 328 QKEEKSK--TEVATTA 339
            KE K K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 196

[Close]

BLAST of Clc10G06020 vs. ExPASy Swiss-Prot
Match: B1XJS8 (50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplX PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.3e-32
Identity = 66/113 (58.41%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 205 KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREE 264
           + +S P  HKMHVK GDTV+VI+GRDKGK+GE+ K    +SKV+V ++N++TKHVK ++E
Sbjct: 4   RKSSTPTRHKMHVKTGDTVQVISGRDKGKVGEVIKTLPKSSKVVVKDVNIRTKHVKPQQE 63

Query: 265 EEQGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIID 318
            E GQI   EAPIHSSNVM YS+++ VASR+G++  E+G++VR L KTGE+ID
Sbjct: 64  GESGQIQTFEAPIHSSNVMHYSEKEKVASRIGYQLTEDGRKVRVLKKTGEVID 116

[Close]

BLAST of Clc10G06020 vs. ExPASy TrEMBL
Match: A0A5D3BUT2 (50S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00400 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.7e-92
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAMAALQSSMTALSLSSNSFLGQRLPPP IYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+VNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKE 327
           GQIIKIEAPIHSSNVMLYSKEQNV SRVGHK LE+GKRVRYLIKTGEIID+ ENWKK KE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 328 EKSKTEVATTA 339
            KSKTEVATTA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of Clc10G06020 vs. ExPASy TrEMBL
Match: A0A1S3BTL8 (50S ribosomal protein L24, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493382 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.7e-92
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAMAALQSSMTALSLSSNSFLGQRLPPP IYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+VNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKE 327
           GQIIKIEAPIHSSNVMLYSKEQNV SRVGHK LE+GKRVRYLIKTGEIID+ ENWKK KE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 328 EKSKTEVATTA 339
            KSKTEVATTA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of Clc10G06020 vs. ExPASy TrEMBL
Match: A0A6J1CNZ8 (50S ribosomal protein L24, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012769 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 6.6e-92
Identity = 181/191 (94.76%), Postives = 186/191 (97.38%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAMAALQSSMT+LSLSSNSFLGQRLP PTIYAAPVTSKEKPCLIVMRLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIV EINLKTKHVKSREEEE+
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKE 327
           GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLE+G+RVRYLIKTGEIID+ ENWKK KE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180

Query: 328 EKSKTEVATTA 339
           EKSKTEVA TA
Sbjct: 181 EKSKTEVAATA 191

[Close]

BLAST of Clc10G06020 vs. ExPASy TrEMBL
Match: A0A0A0L6H1 (KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G098540 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 4.3e-91
Identity = 176/191 (92.15%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLPV+HKMHVK+GDTVKVIAGRDKGKIGEITKIFKHNSKV+VNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKE 327
           GQIIKIEAPIHSSNVMLYSKEQ+V SRVGHK LE+GKRVRYLIKTGEIID+ ENWKK KE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 328 EKSKTEVATTA 339
             SK EVATTA
Sbjct: 181 ANSKAEVATTA 191

[Close]

BLAST of Clc10G06020 vs. ExPASy TrEMBL
Match: A0A6J1ESD2 (50S ribosomal protein L24, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436064 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 2.3e-89
Identity = 175/191 (91.62%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 207
           MAAM +LQSSMTALSLSS+SFLGQRL P TI+AAPVTSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMVSLQSSMTALSLSSSSFLGQRLQPSTIFAAPVTSKEKPCLIVMKLKRWERKECKPN 60

Query: 208 SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 267
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV V EINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVTVKEINLKTKHVKSREEEEQ 120

Query: 268 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKKQKE 327
           GQIIK+EAPIHSSNVMLYSKE++VASRVGHKTLENGKRVRYLIKTGEIID+ +NWKK KE
Sbjct: 121 GQIIKVEAPIHSSNVMLYSKEKDVASRVGHKTLENGKRVRYLIKTGEIIDSTDNWKKLKE 180

Query: 328 EKSKTEVATTA 339
           EKSKTEVATTA
Sbjct: 181 EKSKTEVATTA 191

[Close]

BLAST of Clc10G06020 vs. TAIR 10
Match: AT5G54600.1 (Translation protein SH3-like family protein )

HSP 1 Score: 265.0 bits (676), Expect = 8.2e-71
Identity = 138/196 (70.41%), Postives = 164/196 (83.67%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLS-SNSFLGQRLPPPTIYA--APVTSKEKPCLIVMRLKRWERKEC 207
           MA M+ALQSS T+LSLS S+SFLGQRL  P   +  +PV   E PCL++ +LKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 208 KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREE 267
           KPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +++ ++NLKTKH+KSREE
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120

Query: 268 EEQGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKK 327
            E GQI+KIEAPIHSSNVMLYSKE++V SRVGHK LE+G++VRYLIKTGE+ID IE WK 
Sbjct: 121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180

Query: 328 QKEEKSK--TEVATTA 339
            KE K K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 196

[Close]

BLAST of Clc10G06020 vs. TAIR 10
Match: AT5G54600.2 (Translation protein SH3-like family protein )

HSP 1 Score: 227.6 bits (579), Expect = 1.5e-59
Identity = 126/196 (64.29%), Postives = 147/196 (75.00%), Query Frame = 0


Query: 148 MAAMAALQSSMTALSLS-SNSFLGQRLPPPTIYA--APVTSKEKPCLIVMRLKRWERKEC 207
           MA M+ALQSS T+LSLS S+SFLGQRL  P   +  +PV   E PCL++ +LKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 208 KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREE 267
           KPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +                 
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTI----------------- 120

Query: 268 EEQGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDNIENWKK 327
              GQI+KIEAPIHSSNVMLYSKE++V SRVGHK LE+G++VRYLIKTGE+ID IE WK 
Sbjct: 121 --PGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 177

Query: 328 QKEEKSK--TEVATTA 339
            KE K K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 177

[Close]

BLAST of Clc10G06020 vs. TAIR 10
Match: AT5G23535.1 (KOW domain-containing protein )

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-11
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 220 GDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQGQIIKIEAPIHS 279
           GD V +I G+DKG+ G I ++ +  ++VIV   NL  KH+K   + E G I  +EAP+H+
Sbjct: 18  GDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGGPDHE-GGIFTVEAPLHA 77

Query: 280 SNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTG 314
           SNV +         +VG K LE+G +VR    TG
Sbjct: 78  SNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTG 110

The following BLAST results are available for this feature:

BLAST of Clc10G06020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903308.1	9.1e-96	97.91	50S ribosomal protein L24, chloroplastic [Benincasa hispida]	[more]
KAG6577405.1	9.4e-93	82.89	50S ribosomal protein L24, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_008452322.1	3.6e-92	94.24	PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo] >KAA0046925.1...	[more]
XP_022142723.1	1.4e-91	94.76	50S ribosomal protein L24, chloroplastic [Momordica charantia]	[more]
XP_004149305.1	8.8e-91	92.15	50S ribosomal protein L24, chloroplastic [Cucumis sativus] >XP_031739317.1 50S r...	[more]

BLAST of Clc10G06020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11893	2.1e-71	76.17	50S ribosomal protein L24, chloroplastic OS=Pisum sativum OX=3888 GN=RPL24 PE=2 ...	[more]
Q02764	6.1e-71	73.94	50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL24 P...	[more]
P27683	4.0e-70	73.44	50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL24 P...	[more]
P92959	1.2e-69	70.41	50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
B1XJS8	3.3e-32	58.41	50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]

BLAST of Clc10G06020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUT2	1.7e-92	94.24	50S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BTL8	1.7e-92	94.24	50S ribosomal protein L24, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493382...	[more]
A0A6J1CNZ8	6.6e-92	94.76	50S ribosomal protein L24, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0L6H1	4.3e-91	92.15	KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G098540 PE=3 SV...	[more]
A0A6J1ESD2	2.3e-89	91.62	50S ribosomal protein L24, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Clc10G06020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54600.1	8.2e-71	70.41	Translation protein SH3-like family protein	[more]
AT5G54600.2	1.5e-59	64.29	Translation protein SH3-like family protein	[more]
AT5G23535.1	1.1e-11	40.43	KOW domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 216..243 e-value: 5.7E-7 score: 39.2
IPR005824	KOW	PFAM	PF00467	KOW	coord: 219..249 e-value: 1.0E-8 score: 34.8
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 210..315 e-value: 3.1E-33 score: 116.1
IPR003256	Ribosomal protein L24	PFAM	PF17136	ribosomal_L24	coord: 252..316 e-value: 1.8E-21 score: 76.2
IPR003256	Ribosomal protein L24	TIGRFAM	TIGR01079	TIGR01079	coord: 214..316 e-value: 2.0E-34 score: 116.1
IPR003256	Ribosomal protein L24	PANTHER	PTHR12903	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	coord: 151..336
IPR003256	Ribosomal protein L24	HAMAP	MF_01326_B	Ribosomal_L24_B	coord: 215..311 score: 18.890402
None	No IPR available	PANTHER	PTHR12903:SF11	50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC	coord: 151..336
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 220..237
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 220..284 e-value: 6.51037E-28 score: 101.823
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 213..315

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G06020.1	Clc10G06020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding