Clc10G05530 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G05530
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein LHCP TRANSLOCATION DEFECT
Location	ClcChr10: 6138823 .. 6141199 (+)
RNA-Seq Expression	Clc10G05530
Synteny	Clc10G05530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACTAAGAAAAATTATTTCAACTAATTTTCTAGAAGTGTTAGTTCCAAAAAAAAATGGAAACATTTTGAGGTTTATTTCTCAAGTTTGTATTATCCAAAATGTTGACGAGTGCCCATTAGTGAGATGGCCTGGAGCTTTCATCACTGTCAAGATTCATCCAACGTCCAAGATCTCTTCTGCCAACACTTTCCCACAATCCTTCCATACCCATTGGCCCACCGGATTCTGAGTGGATGGATAGAACCTGCAAGAGTGCGATTGCAAAATCACATTTTCTTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTAAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGGTTCTTTTACTGATTACTCCCTTCTTTCTTTGGATTTTGTGGCTTTCTTGTTATTGTCTTTGGGGACTGTGATTGTTTAAGAGCAGGTGTTTTTTGTTTCATTGCTGGTTTGAGGCTGATTCTTATGATTTTGGAAGTTGAAATTGTTCTTACCCTCTTGCTGTTTTTGTTTTCTTTTAGAAGTTTTGTGAATTCGTAAAGGCTCCTTAGTGAAGGAGTGAAGCTAGATGAATGGACTTAAATTGGGAGGTTTTTGTATGGATGACCTTTCTTAGCAGGGTTAATGGTTTTATGAAAATTAACCTTTTGCTTAGTCATAGAGCATGTTCTAGGCGACTAGGTGCTATATGACGTAAGTAAAAGATTAGTTTTTATTGGTTTTTGTAGGAGGGGGTCATTCTGCATTAACGTTGTTGGTTCAAGGCAATTTGTACAAAAATCTCTTTAAATTGGTTAGTCAAAATAAGAAACGCTTTGTGATATGAGATTGTGAGAAGGGCACCTTAAACGTTATAACCAACCTCATAACTTAGTGCTTTTGTGTAACAAACTCTGCTCTCACATTAGGAAACTAAAACAAGGTGTTCCATTGCCACTATGAAAAGTGCATAGAACTTCCTACTTCCCTCAAACAAAACTTAGCAAACATTACTGATTTGCTGTAGCCTTTAGGTTAAGGGGAGAATCAAAAGTATTCCTTCATCCTTCTGCTCTTTTGCTTTGCAAATGTGCTGAATCACCTTGTCCATAGTTTAAAGACTCGAGCAAGCCACGTTTTCCTTACGGCCTCTCAGCACTTTTTTTAAGCATTCACAAAGTCCATCCAGACAGACTCCTAGTATGTAACAAGAAGAGAGAAATACACCATACGAACAATGAAAACCATTAAACATAATAGCTTGATTTGACTCATTGCATTAGTCATGACTTGAGATTTAAGATGACTCCCAATTGTATCAAGCTTCTCAAAGAGATGAATCATGATGAACAATAATATTCCAACATGTTCCTATCCCAAATTAGGTACAGAAGAAGTCTACTTTTAGTGTTCTTAGTCCAATGCCAATCATTCATCTCAACTAGTCTATGATAGCATGTCTTATATAATTAGTTAATGAGTATCATGGCATTAAAGTGACAACTTGGCACATATTCTATAAGATAGAATCTTAATCTAAGTACCCAAATTAAAAGTGAGATTATGTCGACACTTTTCGAGTCAATTGTGGATACCAAAAACTCTGAACCATGAGATTAACATCATTCCTAGAAACAAATTTTAAAGGAAAGTGAACATTTTGGTTGTGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGCACATATGACAAAATGGAGGCTCTGTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGATTTGGTTGGAAATGGCTCTGTTTTGATAGGTTTAGAAAGAGGCTTAAGATTTGTATTCTCACTGCCTTCTGATGTTAATCATATTGTATTTAAATTGTACACCTGTTTTCATCCATTTGGGAATGGCTTGGAGATGTAAAATCTTGTTTATAGATATTCAGAGGGTGTGTTTAGTTTAAAACTTGATTTGATTTAATTTTTTAAAGCATTTGTAGGGAGTGGACAACAATACATAAAAATTTATAAGTGAAAA

mRNA sequence

TGGACTAAGAAAAATTATTTCAACTAATTTTCTAGAAGTGTTAGTTCCAAAAAAAAATGGAAACATTTTGAGGTTTATTTCTCAAGTTTGTATTATCCAAAATGTTGACGAGTGCCCATTAGTGAGATGGCCTGGAGCTTTCATCACTGTCAAGATTCATCCAACGTCCAAGATCTCTTCTGCCAACACTTTCCCACAATCCTTCCATACCCATTGGCCCACCGGATTCTGAGTGGATGGATAGAACCTGCAAGAGTGCGATTGCAAAATCACATTTTCTTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTAAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGCACATATGACAAAATGGAGGCTCTGTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGATTTGGTTGGAAATGGCTCTGTTTTGATAGGTTTAGAAAGAGGCTTAAGATTTGTATTCTCACTGCCTTCTGATGTTAATCATATTGTATTTAAATTGTACACCTGTTTTCATCCATTTGGGAATGGCTTGGAGATGTAAAATCTTGTTTATAGATATTCAGAGGGTGTGTTTAGTTTAAAACTTGATTTGATTTAATTTTTTAAAGCATTTGTAGGGAGTGGACAACAATACATAAAAATTTATAAGTGAAAA

Coding sequence (CDS)

ATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTAAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGCACATATGACAAAATGGAGGCTCTGTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA

Protein sequence

MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

Homology

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BLAST of Clc10G05530 vs. NCBI nr
Match: XP_004152919.1 (protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical protein Csa_010871 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQ 60
           MASLSCT+SINLTPRS NSRPP KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of Clc10G05530 vs. NCBI nr
Match: XP_038903413.1 (protein LHCP TRANSLOCATION DEFECT [Benincasa hispida])

HSP 1 Score: 318.2 bits (814), Expect = 4.4e-83
Identity = 157/168 (93.45%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQ 60
           MASLSCT S+NLTPRS NSRPP KL S FLGLQS+LRWVSPVAIGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTNSMNLTPRSFNSRPPFKLSSQFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGANYDVKDVDGRTAIDR PNEEIKDFILN SVK A
Sbjct: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNLSVKNA 168

[Close]

BLAST of Clc10G05530 vs. NCBI nr
Match: XP_008463435.1 (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa] >TYK02597.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-82
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQ 60
           MASLSCTTSINLTPRS NSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of Clc10G05530 vs. NCBI nr
Match: XP_022932181.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata])

HSP 1 Score: 310.5 bits (794), Expect = 9.1e-81
Identity = 155/168 (92.26%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+SCT TSINL+P SLNSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Clc10G05530 vs. NCBI nr
Match: XP_022985270.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima])

HSP 1 Score: 308.9 bits (790), Expect = 2.7e-80
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+SCT TSINL+P S NSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Clc10G05530 vs. ExPASy Swiss-Prot
Match: Q8VY88 (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.7e-56
Identity = 111/169 (65.68%), Postives = 130/169 (76.92%), Query Frame = 0


Query: 3   SLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQN- 62
           S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF F +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           +EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]

BLAST of Clc10G05530 vs. ExPASy Swiss-Prot
Match: A2YLX7 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.2e-47
Identity = 105/175 (60.00%), Postives = 127/175 (72.57%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATC 60
           MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of Clc10G05530 vs. ExPASy Swiss-Prot
Match: A3BKF2 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LTD PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.2e-47
Identity = 105/175 (60.00%), Postives = 127/175 (72.57%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATC 60
           MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of Clc10G05530 vs. ExPASy TrEMBL
Match: A0A0A0L309 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.3e-84
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQ 60
           MASLSCT+SINLTPRS NSRPP KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of Clc10G05530 vs. ExPASy TrEMBL
Match: A0A5D3BT07 (Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00530 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQ 60
           MASLSCTTSINLTPRS NSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of Clc10G05530 vs. ExPASy TrEMBL
Match: A0A1S3CJ75 (protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQ 60
           MASLSCTTSINLTPRS NSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of Clc10G05530 vs. ExPASy TrEMBL
Match: A0A6J1EVN2 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.4e-81
Identity = 155/168 (92.26%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+SCT TSINL+P SLNSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Clc10G05530 vs. ExPASy TrEMBL
Match: A0A6J1JAV9 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+SCT TSINL+P S NSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

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BLAST of Clc10G05530 vs. TAIR 10
Match: AT1G50900.1 (Ankyrin repeat family protein )

HSP 1 Score: 218.8 bits (556), Expect = 3.4e-57
Identity = 111/169 (65.68%), Postives = 130/169 (76.92%), Query Frame = 0


Query: 3   SLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQN- 62
           S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF F +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           +EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

The following BLAST results are available for this feature:

BLAST of Clc10G05530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152919.1	1.5e-83	92.86	protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical pro...	[more]
XP_038903413.1	4.4e-83	93.45	protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]	[more]
XP_008463435.1	2.8e-82	92.26	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protei...	[more]
XP_022932181.1	9.1e-81	92.26	protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]	[more]
XP_022985270.1	2.7e-80	91.67	protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]	[more]

BLAST of Clc10G05530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY88	4.7e-56	65.68	Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV...	[more]
A2YLX7	5.2e-47	60.00	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD ...	[more]
A3BKF2	5.2e-47	60.00	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LT...	[more]

BLAST of Clc10G05530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L309	7.3e-84	92.86	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078...	[more]
A0A5D3BT07	1.4e-82	92.26	Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CJ75	1.4e-82	92.26	protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 S...	[more]
A0A6J1EVN2	4.4e-81	92.26	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 ...	[more]
A0A6J1JAV9	1.3e-80	91.67	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE...	[more]

BLAST of Clc10G05530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50900.1	3.4e-57	65.68	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 90..167 e-value: 6.8E-6 score: 27.8
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 90..159
IPR044242	Protein LHCP TRANSLOCATION DEFECT-like	PANTHER	PTHR47317	PROTEIN LHCP TRANSLOCATION DEFECT	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G05530.1	Clc10G05530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma